PCHAS_1218500 | signal peptidase complex subunit 2, putative

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  • Fasta :-

    >PCHAS_1218500 MFSKKVRIENKEDDAYIVKNLYSENEIKKVAQDYLRVEIKNLHIYENVRYSNVRILLSLI LIIIGGYCCVFVNHKKEPILMMDFLGAFFSVSILLYLWEYFYFEDYFMIIKTNNNKTLKL FLKLDIKTNTLSLNYKLNKVVYSTPFELMKLYNERGYLMKDYARHILKQFISNHGKNFKL TDKK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1218500.fa Sequence name : PCHAS_1218500 Sequence length : 184 VALUES OF COMPUTED PARAMETERS Coef20 : 3.524 CoefTot : 0.021 ChDiff : 10 ZoneTo : 8 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.288 2.753 0.701 0.901 MesoH : 0.046 0.929 -0.213 0.415 MuHd_075 : 17.105 10.756 4.898 2.975 MuHd_095 : 7.923 7.202 2.559 3.714 MuHd_100 : 9.373 2.524 2.318 3.506 MuHd_105 : 14.279 7.064 3.027 3.976 Hmax_075 : -10.700 3.238 -3.327 0.840 Hmax_095 : -9.275 3.850 -3.389 1.785 Hmax_100 : -12.200 1.100 -4.594 1.540 Hmax_105 : -9.800 0.100 -3.621 1.050 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9475 0.0525 DFMC : 0.9717 0.0283
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 184 PCHAS_1218500 MFSKKVRIENKEDDAYIVKNLYSENEIKKVAQDYLRVEIKNLHIYENVRYSNVRILLSLILIIIGGYCCVFVNHKKEPIL 80 MMDFLGAFFSVSILLYLWEYFYFEDYFMIIKTNNNKTLKLFLKLDIKTNTLSLNYKLNKVVYSTPFELMKLYNERGYLMK 160 DYARHILKQFISNHGKNFKLTDKK 240 ................................................................................ 80 ................................................................................ 160 ........................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1218500 4 ---MFSK|KV 0.079 . PCHAS_1218500 5 --MFSKK|VR 0.083 . PCHAS_1218500 7 MFSKKVR|IE 0.116 . PCHAS_1218500 11 KVRIENK|ED 0.067 . PCHAS_1218500 19 DDAYIVK|NL 0.062 . PCHAS_1218500 28 YSENEIK|KV 0.070 . PCHAS_1218500 29 SENEIKK|VA 0.137 . PCHAS_1218500 36 VAQDYLR|VE 0.079 . PCHAS_1218500 40 YLRVEIK|NL 0.077 . PCHAS_1218500 49 HIYENVR|YS 0.078 . PCHAS_1218500 54 VRYSNVR|IL 0.083 . PCHAS_1218500 75 CVFVNHK|KE 0.054 . PCHAS_1218500 76 VFVNHKK|EP 0.080 . PCHAS_1218500 111 DYFMIIK|TN 0.054 . PCHAS_1218500 116 IKTNNNK|TL 0.056 . PCHAS_1218500 119 NNNKTLK|LF 0.059 . PCHAS_1218500 123 TLKLFLK|LD 0.063 . PCHAS_1218500 127 FLKLDIK|TN 0.057 . PCHAS_1218500 136 TLSLNYK|LN 0.072 . PCHAS_1218500 139 LNYKLNK|VV 0.071 . PCHAS_1218500 150 TPFELMK|LY 0.066 . PCHAS_1218500 155 MKLYNER|GY 0.083 . PCHAS_1218500 160 ERGYLMK|DY 0.077 . PCHAS_1218500 164 LMKDYAR|HI 0.110 . PCHAS_1218500 168 YARHILK|QF 0.061 . PCHAS_1218500 176 FISNHGK|NF 0.062 . PCHAS_1218500 179 NHGKNFK|LT 0.074 . PCHAS_1218500 183 NFKLTDK|K- 0.059 . PCHAS_1218500 184 FKLTDKK|-- 0.092 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1218500 ATGTTTAGTAAAAAGGTCCGAATTGAAAATAAAGAAGATGACGCATACATTGTAAAAAAC CTATACAGTGAAAATGAGATTAAAAAAGTTGCGCAGGATTACCTAAGGGTGGAAATAAAA AACCTACATATCTATGAAAACGTTCGATATTCAAACGTTAGGATCCTATTATCTTTAATC TTGATAATTATTGGAGGATATTGTTGCGTTTTTGTCAACCACAAAAAAGAGCCAATACTT ATGATGGATTTCCTGGGTGCCTTTTTTTCTGTATCAATATTATTATACCTTTGGGAATAT TTTTATTTTGAGGATTATTTCATGATAATAAAAACAAATAATAACAAAACATTAAAACTA TTCTTAAAATTGGATATCAAAACAAATACCCTTAGTTTAAATTACAAATTAAATAAAGTA GTATATTCTACACCTTTTGAGTTGATGAAATTATATAATGAAAGAGGGTACCTTATGAAG GATTATGCGCGTCATATATTAAAGCAATTTATTTCAAATCATGGAAAGAATTTTAAATTA ACAGATAAAAAATAA
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PCHAS_121850      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India