PCHAS_1223500 | 26S proteasome regulatory subunit RPN10, putative

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_1223500OTHER0.9999860.0000130.000000
No Results

  • Fasta :-

    >PCHAS_1223500 MSNIEATIICIDNSDYNMNEDIVPNRFMSQIDCVNVLCCNKTSMHYKNSIGVLVMAGDGI KVKVSLTNDIGQLLSCIHDIKIDGSCDIIRSLLIAQLALKHRVDKNLEQKIIVFIGSPIE VNEKQLINTGKQLKKNNISIDIISYGNISKNRDKLNKLFESTNNNGNCRIIECPEDEDNL SKYVLNKILSNSNFNMNNLDEDEQLITAMELSMSTVNNARDGANASSNNNTQSGSNINLR KNPNDLPTVQDIENMKDIDNELKEALLLSLREYNEKNKTDNESQGENINNKINSDLKNGE DITIVNEEYKNIFDNEKTGLQKKLTGEKKENESYEKVFKMCKDESIDDENNKFQVNPNVY ANAENNGEHGSSQTKDGKNASSIQDTSYISQILEKIPGNSTNLLDKNSDTDKEDDNNDTK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1223500.fa Sequence name : PCHAS_1223500 Sequence length : 420 VALUES OF COMPUTED PARAMETERS Coef20 : 3.592 CoefTot : -0.022 ChDiff : -21 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.235 1.400 -0.068 0.472 MesoH : -0.622 0.574 -0.288 0.209 MuHd_075 : 7.444 10.524 4.566 2.063 MuHd_095 : 12.051 7.499 3.572 2.391 MuHd_100 : 15.776 12.616 4.233 3.498 MuHd_105 : 19.352 14.145 4.681 3.721 Hmax_075 : 9.917 12.950 1.544 4.527 Hmax_095 : 6.738 7.700 0.762 3.460 Hmax_100 : 8.600 13.100 1.694 4.530 Hmax_105 : 17.900 15.800 2.983 5.250 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9899 0.0101 DFMC : 0.9915 0.0085
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 420 PCHAS_1223500 MSNIEATIICIDNSDYNMNEDIVPNRFMSQIDCVNVLCCNKTSMHYKNSIGVLVMAGDGIKVKVSLTNDIGQLLSCIHDI 80 KIDGSCDIIRSLLIAQLALKHRVDKNLEQKIIVFIGSPIEVNEKQLINTGKQLKKNNISIDIISYGNISKNRDKLNKLFE 160 STNNNGNCRIIECPEDEDNLSKYVLNKILSNSNFNMNNLDEDEQLITAMELSMSTVNNARDGANASSNNNTQSGSNINLR 240 KNPNDLPTVQDIENMKDIDNELKEALLLSLREYNEKNKTDNESQGENINNKINSDLKNGEDITIVNEEYKNIFDNEKTGL 320 QKKLTGEKKENESYEKVFKMCKDESIDDENNKFQVNPNVYANAENNGEHGSSQTKDGKNASSIQDTSYISQILEKIPGNS 400 TNLLDKNSDTDKEDDNNDTK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1223500 26 EDIVPNR|FM 0.119 . PCHAS_1223500 41 NVLCCNK|TS 0.054 . PCHAS_1223500 47 KTSMHYK|NS 0.104 . PCHAS_1223500 61 MAGDGIK|VK 0.054 . PCHAS_1223500 63 GDGIKVK|VS 0.062 . PCHAS_1223500 81 SCIHDIK|ID 0.063 . PCHAS_1223500 90 GSCDIIR|SL 0.139 . PCHAS_1223500 100 IAQLALK|HR 0.057 . PCHAS_1223500 102 QLALKHR|VD 0.085 . PCHAS_1223500 105 LKHRVDK|NL 0.267 . PCHAS_1223500 110 DKNLEQK|II 0.065 . PCHAS_1223500 124 PIEVNEK|QL 0.064 . PCHAS_1223500 131 QLINTGK|QL 0.075 . PCHAS_1223500 134 NTGKQLK|KN 0.065 . PCHAS_1223500 135 TGKQLKK|NN 0.094 . PCHAS_1223500 150 SYGNISK|NR 0.059 . PCHAS_1223500 152 GNISKNR|DK 0.130 . PCHAS_1223500 154 ISKNRDK|LN 0.063 . PCHAS_1223500 157 NRDKLNK|LF 0.067 . PCHAS_1223500 169 NNNGNCR|II 0.117 . PCHAS_1223500 182 DEDNLSK|YV 0.071 . PCHAS_1223500 187 SKYVLNK|IL 0.081 . PCHAS_1223500 220 STVNNAR|DG 0.086 . PCHAS_1223500 240 GSNINLR|KN 0.105 . PCHAS_1223500 241 SNINLRK|NP 0.084 . PCHAS_1223500 256 QDIENMK|DI 0.088 . PCHAS_1223500 263 DIDNELK|EA 0.053 . PCHAS_1223500 271 ALLLSLR|EY 0.069 . PCHAS_1223500 276 LREYNEK|NK 0.075 . PCHAS_1223500 278 EYNEKNK|TD 0.064 . PCHAS_1223500 291 GENINNK|IN 0.077 . PCHAS_1223500 297 KINSDLK|NG 0.062 . PCHAS_1223500 310 IVNEEYK|NI 0.088 . PCHAS_1223500 317 NIFDNEK|TG 0.056 . PCHAS_1223500 322 EKTGLQK|KL 0.060 . PCHAS_1223500 323 KTGLQKK|LT 0.120 . PCHAS_1223500 328 KKLTGEK|KE 0.054 . PCHAS_1223500 329 KLTGEKK|EN 0.118 . PCHAS_1223500 336 ENESYEK|VF 0.056 . PCHAS_1223500 339 SYEKVFK|MC 0.062 . PCHAS_1223500 342 KVFKMCK|DE 0.063 . PCHAS_1223500 352 IDDENNK|FQ 0.056 . PCHAS_1223500 375 HGSSQTK|DG 0.069 . PCHAS_1223500 378 SQTKDGK|NA 0.085 . PCHAS_1223500 395 ISQILEK|IP 0.068 . PCHAS_1223500 406 STNLLDK|NS 0.065 . PCHAS_1223500 412 KNSDTDK|ED 0.069 . PCHAS_1223500 420 DDNNDTK|-- 0.065 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1223500 ATGAGCAATATCGAGGCGACGATTATTTGCATAGATAATAGTGACTACAATATGAATGAA GATATTGTCCCCAACCGATTTATGTCACAGATCGATTGTGTGAACGTCCTCTGCTGCAAC AAGACGAGCATGCATTACAAAAATAGCATAGGAGTGCTGGTTATGGCAGGCGATGGGATA AAAGTAAAAGTTTCATTAACAAATGATATTGGGCAATTACTGTCATGTATTCATGATATA AAAATAGATGGATCATGTGATATAATTAGAAGTTTGCTTATTGCACAGTTAGCTTTAAAG CATAGAGTAGATAAAAATTTAGAACAGAAAATTATCGTTTTTATTGGAAGTCCTATAGAA GTTAATGAAAAACAATTAATAAATACTGGGAAGCAATTAAAAAAAAATAATATATCTATT GATATAATTAGTTATGGAAATATAAGTAAGAATAGAGATAAATTAAATAAATTATTTGAA TCTACAAATAATAATGGAAACTGCAGAATTATAGAATGTCCTGAAGATGAGGACAACCTA AGTAAATATGTTTTAAATAAAATTTTAAGTAACAGTAATTTTAATATGAATAATTTAGAT GAAGATGAACAATTGATAACTGCAATGGAATTATCTATGAGTACTGTCAATAATGCAAGA GATGGTGCAAATGCATCTTCCAATAATAATACACAATCAGGAAGTAATATAAATTTAAGA AAAAATCCAAATGATTTACCAACTGTTCAGGATATAGAAAATATGAAAGACATTGATAAT GAGTTAAAGGAAGCTTTATTATTATCTTTAAGAGAATATAATGAAAAAAATAAAACTGAT AATGAAAGTCAAGGTGAAAATATAAATAATAAAATAAATTCGGATTTAAAGAATGGAGAA GATATTACAATAGTTAATGAAGAATATAAAAATATTTTTGATAATGAGAAAACTGGTTTA CAAAAAAAACTAACGGGAGAAAAAAAAGAAAATGAAAGTTATGAAAAAGTTTTTAAAATG TGTAAAGATGAAAGTATAGATGATGAAAATAATAAATTTCAAGTTAATCCAAATGTGTAT GCTAATGCAGAAAATAATGGTGAACATGGAAGTAGCCAAACAAAGGATGGTAAAAATGCT TCTTCAATACAAGATACAAGTTATATATCTCAAATTTTAGAAAAAATTCCAGGGAATTCA ACTAATCTACTTGATAAAAATTCAGACACAGATAAAGAAGATGACAATAATGATACCAAA TAA
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  • Fasta :-

    MSNIEATIICIDNSDYNMNEDIVPNRFMSQIDCVNVLCCNKTSMHYKNSIGVLVMAGDGI KVKVSLTNDIGQLLSCIHDIKIDGSCDIIRSLLIAQLALKHRVDKNLEQKIIVFIGSPIE VNEKQLINTGKQLKKNNISIDIISYGNISKNRDKLNKLFESTNNNGNCRIIECPEDEDNL SKYVLNKILSNSNFNMNNLDEDEQLITAMELSMSTVNNARDGANASSNNNTQSGSNINLR KNPNDLPTVQDIENMKDIDNELKEALLLSLREYNEKNKTDNESQGENINNKINSDLKNGE DITIVNEEYKNIFDNEKTGLQKKLTGEKKENESYEKVFKMCKDESIDDENNKFQVNPNVY ANAENNGEHGSSQTKDGKNASSIQDTSYISQILEKIPGNSTNLLDKNSDTDKEDDNNDTK

  • title: metal ion-dependent adhesion site (MIDAS)
  • coordinates: D12,C86,G116
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1223500382 SKNASSIQDT0.993unspPCHAS_1223500382 SKNASSIQDT0.993unspPCHAS_1223500382 SKNASSIQDT0.993unspPCHAS_122350029 SNRFMSQIDC0.994unspPCHAS_1223500283 STDNESQGEN0.993unsp

PCHAS_122350      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India