PCHAS_1233100 | eukaryotic translation initiation factor 3 subunit B, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1233100OTHER0.9999000.0000780.000022
No Results

  • Fasta :-

    >PCHAS_1233100 MVKVEESELSDKELVDFLSDDSDDGNETLLNKKYAGKEALITLETKFPKIVTILGIPKVE EEKHSRLAEVLKKLFIRHLSAKISDSSIMNIKIHMPVDDEKKTKGICFVTFHDSFQANEA VKVLNKLKLDAKHLLTASKMDDIENIINRDERVMPINVVGFTREKIRWWLYDEKCREQFI VRYDSHFEVHWLDPLEKEPQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF EKLIRLQHKSVKDISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEYSP REKIFPHFLWSPDDKYIACIGKQKEVYIYELPSMLLLEDHEKKRTPLKYSVVKEFDWSPV DNIVAIWIPETNNTPGTLILVEIPSRKELVSRKIYDVSQASIHWQSKGDYLCLKTTIVKK IGKKGKKEHTQLEIFRMREKNIPVDNIQIEGVKTKQFHWEESNSNRFALIVRDEATSRQQ IRFYKILNKGATRNVKWTSTFDINNQMNFMKWSPQGTFFILASLLSEGMLYFCFLNSNDE VEVIHKDEHLLVNSVAWSNCGRYLVTSVSNLSGISSSNYKEENSETGFYIWTFQGRCLMT VKKPSFYQFFFRPHPKSLFSDKLKIDIKNNLKDYSKKFDVIDEKIRNSKKNQLISERKNV ENSFNEKLEKITKLFQSFKEYELFRRNWETFESQFEWEEKTVVIEHVLSVKQEIFA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1233100.fa Sequence name : PCHAS_1233100 Sequence length : 716 VALUES OF COMPUTED PARAMETERS Coef20 : 3.355 CoefTot : -0.113 ChDiff : 8 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.729 1.841 0.275 0.694 MesoH : -0.305 0.267 -0.360 0.228 MuHd_075 : 24.353 16.058 7.463 4.690 MuHd_095 : 18.106 9.033 4.943 2.926 MuHd_100 : 19.050 9.081 5.255 2.103 MuHd_105 : 25.232 14.501 6.527 4.175 Hmax_075 : 4.667 13.650 0.148 4.060 Hmax_095 : -0.962 9.275 -1.738 3.447 Hmax_100 : -5.400 8.200 -2.176 2.580 Hmax_105 : 6.700 12.200 0.108 4.060 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9436 0.0564 DFMC : 0.9679 0.0321
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 716 PCHAS_1233100 MVKVEESELSDKELVDFLSDDSDDGNETLLNKKYAGKEALITLETKFPKIVTILGIPKVEEEKHSRLAEVLKKLFIRHLS 80 AKISDSSIMNIKIHMPVDDEKKTKGICFVTFHDSFQANEAVKVLNKLKLDAKHLLTASKMDDIENIINRDERVMPINVVG 160 FTREKIRWWLYDEKCREQFIVRYDSHFEVHWLDPLEKEPQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF 240 EKLIRLQHKSVKDISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEYSPREKIFPHFLWSPDDKYIACI 320 GKQKEVYIYELPSMLLLEDHEKKRTPLKYSVVKEFDWSPVDNIVAIWIPETNNTPGTLILVEIPSRKELVSRKIYDVSQA 400 SIHWQSKGDYLCLKTTIVKKIGKKGKKEHTQLEIFRMREKNIPVDNIQIEGVKTKQFHWEESNSNRFALIVRDEATSRQQ 480 IRFYKILNKGATRNVKWTSTFDINNQMNFMKWSPQGTFFILASLLSEGMLYFCFLNSNDEVEVIHKDEHLLVNSVAWSNC 560 GRYLVTSVSNLSGISSSNYKEENSETGFYIWTFQGRCLMTVKKPSFYQFFFRPHPKSLFSDKLKIDIKNNLKDYSKKFDV 640 IDEKIRNSKKNQLISERKNVENSFNEKLEKITKLFQSFKEYELFRRNWETFESQFEWEEKTVVIEHVLSVKQEIFA 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................................................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1233100 3 ----MVK|VE 0.061 . PCHAS_1233100 12 ESELSDK|EL 0.060 . PCHAS_1233100 32 NETLLNK|KY 0.057 . PCHAS_1233100 33 ETLLNKK|YA 0.112 . PCHAS_1233100 37 NKKYAGK|EA 0.072 . PCHAS_1233100 46 LITLETK|FP 0.059 . PCHAS_1233100 49 LETKFPK|IV 0.081 . PCHAS_1233100 58 TILGIPK|VE 0.057 . PCHAS_1233100 63 PKVEEEK|HS 0.061 . PCHAS_1233100 66 EEEKHSR|LA 0.094 . PCHAS_1233100 72 RLAEVLK|KL 0.067 . PCHAS_1233100 73 LAEVLKK|LF 0.093 . PCHAS_1233100 77 LKKLFIR|HL 0.143 . PCHAS_1233100 82 IRHLSAK|IS 0.104 . PCHAS_1233100 92 SSIMNIK|IH 0.067 . PCHAS_1233100 101 MPVDDEK|KT 0.066 . PCHAS_1233100 102 PVDDEKK|TK 0.108 . PCHAS_1233100 104 DDEKKTK|GI 0.083 . PCHAS_1233100 122 QANEAVK|VL 0.062 . PCHAS_1233100 126 AVKVLNK|LK 0.057 . PCHAS_1233100 128 KVLNKLK|LD 0.064 . PCHAS_1233100 132 KLKLDAK|HL 0.067 . PCHAS_1233100 139 HLLTASK|MD 0.061 . PCHAS_1233100 149 IENIINR|DE 0.101 . PCHAS_1233100 152 IINRDER|VM 0.205 . PCHAS_1233100 163 NVVGFTR|EK 0.073 . PCHAS_1233100 165 VGFTREK|IR 0.054 . PCHAS_1233100 167 FTREKIR|WW 0.100 . PCHAS_1233100 174 WWLYDEK|CR 0.060 . PCHAS_1233100 176 LYDEKCR|EQ 0.085 . PCHAS_1233100 182 REQFIVR|YD 0.115 . PCHAS_1233100 197 WLDPLEK|EP 0.060 . PCHAS_1233100 207 LIYTTFK|KN 0.060 . PCHAS_1233100 208 IYTTFKK|NA 0.089 . PCHAS_1233100 242 GGDNFEK|LI 0.063 . PCHAS_1233100 245 NFEKLIR|LQ 0.083 . PCHAS_1233100 249 LIRLQHK|SV 0.147 . PCHAS_1233100 252 LQHKSVK|DI 0.100 . PCHAS_1233100 274 GTPASLR|NE 0.069 . PCHAS_1233100 277 ASLRNEK|SI 0.200 . PCHAS_1233100 283 KSICIWR|VI 0.096 . PCHAS_1233100 288 WRVITGK|LL 0.066 . PCHAS_1233100 291 ITGKLLR|SF 0.127 . PCHAS_1233100 301 TPEYSPR|EK 0.084 . PCHAS_1233100 303 EYSPREK|IF 0.066 . PCHAS_1233100 315 LWSPDDK|YI 0.107 . PCHAS_1233100 322 YIACIGK|QK 0.068 . PCHAS_1233100 324 ACIGKQK|EV 0.078 . PCHAS_1233100 342 LLEDHEK|KR 0.059 . PCHAS_1233100 343 LEDHEKK|RT 0.079 . PCHAS_1233100 344 EDHEKKR|TP 0.137 . PCHAS_1233100 348 KKRTPLK|YS 0.083 . PCHAS_1233100 353 LKYSVVK|EF 0.070 . PCHAS_1233100 386 LVEIPSR|KE 0.069 . PCHAS_1233100 387 VEIPSRK|EL 0.067 . PCHAS_1233100 392 RKELVSR|KI 0.110 . PCHAS_1233100 393 KELVSRK|IY 0.100 . PCHAS_1233100 407 SIHWQSK|GD 0.076 . PCHAS_1233100 414 GDYLCLK|TT 0.064 . PCHAS_1233100 419 LKTTIVK|KI 0.071 . PCHAS_1233100 420 KTTIVKK|IG 0.090 . PCHAS_1233100 423 IVKKIGK|KG 0.062 . PCHAS_1233100 424 VKKIGKK|GK 0.089 . PCHAS_1233100 426 KIGKKGK|KE 0.090 . PCHAS_1233100 427 IGKKGKK|EH 0.100 . PCHAS_1233100 436 TQLEIFR|MR 0.100 . PCHAS_1233100 438 LEIFRMR|EK 0.085 . PCHAS_1233100 440 IFRMREK|NI 0.062 . PCHAS_1233100 453 IQIEGVK|TK 0.054 . PCHAS_1233100 455 IEGVKTK|QF 0.090 . PCHAS_1233100 466 EESNSNR|FA 0.170 . PCHAS_1233100 472 RFALIVR|DE 0.102 . PCHAS_1233100 478 RDEATSR|QQ 0.078 . PCHAS_1233100 482 TSRQQIR|FY 0.141 . PCHAS_1233100 485 QQIRFYK|IL 0.161 . PCHAS_1233100 489 FYKILNK|GA 0.070 . PCHAS_1233100 493 LNKGATR|NV 0.087 . PCHAS_1233100 496 GATRNVK|WT 0.127 . PCHAS_1233100 511 NQMNFMK|WS 0.081 . PCHAS_1233100 546 EVEVIHK|DE 0.062 . PCHAS_1233100 562 AWSNCGR|YL 0.121 . PCHAS_1233100 580 ISSSNYK|EE 0.065 . PCHAS_1233100 596 IWTFQGR|CL 0.103 . PCHAS_1233100 602 RCLMTVK|KP 0.060 . PCHAS_1233100 603 CLMTVKK|PS 0.112 . PCHAS_1233100 612 FYQFFFR|PH 0.109 . PCHAS_1233100 616 FFRPHPK|SL 0.082 . PCHAS_1233100 622 KSLFSDK|LK 0.071 . PCHAS_1233100 624 LFSDKLK|ID 0.065 . PCHAS_1233100 628 KLKIDIK|NN 0.056 . PCHAS_1233100 632 DIKNNLK|DY 0.073 . PCHAS_1233100 636 NLKDYSK|KF 0.062 . PCHAS_1233100 637 LKDYSKK|FD 0.108 . PCHAS_1233100 644 FDVIDEK|IR 0.058 . PCHAS_1233100 646 VIDEKIR|NS 0.077 . PCHAS_1233100 649 EKIRNSK|KN 0.092 . PCHAS_1233100 650 KIRNSKK|NQ 0.100 . PCHAS_1233100 657 NQLISER|KN 0.069 . PCHAS_1233100 658 QLISERK|NV 0.116 . PCHAS_1233100 667 ENSFNEK|LE 0.057 . PCHAS_1233100 670 FNEKLEK|IT 0.059 . PCHAS_1233100 673 KLEKITK|LF 0.057 . PCHAS_1233100 679 KLFQSFK|EY 0.066 . PCHAS_1233100 685 KEYELFR|RN 0.087 . PCHAS_1233100 686 EYELFRR|NW 0.169 . PCHAS_1233100 700 QFEWEEK|TV 0.068 . PCHAS_1233100 711 EHVLSVK|QE 0.060 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1233100 ATGGTTAAAGTTGAAGAAAGCGAATTAAGCGACAAGGAACTTGTCGATTTTTTATCAGAT GATAGTGATGATGGAAATGAAACTTTGTTAAATAAAAAATATGCAGGAAAAGAAGCCTTG ATTACACTTGAAACAAAGTTTCCTAAAATCGTTACAATATTAGGTATACCAAAAGTAGAA GAAGAAAAACATAGTAGGTTAGCAGAAGTTTTAAAGAAATTATTTATAAGGCATTTAAGT GCCAAAATAAGTGATTCTTCAATAATGAATATAAAAATCCATATGCCAGTAGATGATGAA AAAAAAACAAAAGGAATATGCTTTGTTACATTTCATGATAGTTTTCAAGCAAATGAAGCA GTAAAGGTATTAAATAAATTAAAATTGGATGCAAAACATTTATTAACAGCATCCAAAATG GATGATATAGAAAATATAATAAATAGGGATGAGCGTGTAATGCCTATAAATGTTGTTGGT TTTACAAGAGAAAAAATCAGATGGTGGTTATATGATGAAAAATGTCGAGAACAATTTATT GTTCGATATGATAGTCATTTTGAAGTTCATTGGTTAGATCCTTTAGAAAAAGAACCACAA TTAATTTATACTACATTTAAAAAGAATGCTCCGTTCTCAAGTGTCCAATGGAGTAACCAA GGGTCATACTTAGTCAGTTTTCATAACCCAGGTATTGCATTATGGGGTGGAGATAATTTT GAAAAATTAATAAGGCTACAACATAAAAGTGTTAAAGATATAAGTTTTTCACCAAATGAA AATTATGTACTAACTTGGGATGGTACTCCTGCTTCATTAAGAAATGAAAAATCTATTTGT ATATGGAGAGTAATAACAGGAAAATTGCTTCGTTCTTTTATCACACCTGAATATAGTCCA AGAGAAAAAATATTTCCCCATTTTTTATGGAGCCCTGATGATAAATATATTGCATGTATA GGAAAACAAAAAGAAGTATATATATATGAATTACCATCTATGTTATTATTAGAAGATCAT GAAAAAAAAAGAACTCCACTAAAATATTCAGTCGTTAAAGAGTTTGATTGGTCACCTGTA GATAATATAGTTGCAATTTGGATTCCAGAAACAAATAATACACCAGGAACTTTGATATTA GTAGAAATACCATCTAGAAAAGAATTAGTATCTAGAAAAATTTATGATGTTAGTCAAGCA TCTATTCATTGGCAAAGTAAAGGAGATTATTTATGTCTTAAAACAACTATTGTAAAAAAA ATTGGAAAAAAAGGAAAAAAAGAACATACACAATTAGAAATATTTAGAATGAGAGAAAAA AATATACCTGTAGATAATATACAAATCGAAGGAGTAAAAACAAAACAATTTCATTGGGAA GAATCAAATAGTAATAGATTTGCATTAATAGTAAGAGATGAAGCTACAAGTAGACAACAA ATAAGATTTTATAAAATATTAAATAAAGGTGCTACAAGAAATGTAAAATGGACTAGTACA TTTGATATAAATAATCAAATGAATTTTATGAAATGGTCACCACAAGGAACCTTTTTTATA TTAGCTTCCTTACTATCAGAAGGAATGTTATATTTCTGTTTCTTAAATTCAAATGATGAA GTTGAAGTTATACATAAAGATGAACATTTGTTAGTAAATTCTGTTGCATGGAGTAATTGT GGTAGATACCTTGTTACATCTGTTTCGAATTTATCTGGTATATCAAGTTCTAATTATAAA GAAGAAAATAGTGAAACAGGTTTTTATATATGGACTTTTCAAGGTAGATGTTTAATGACT GTTAAAAAACCATCATTTTATCAATTCTTTTTTCGACCTCATCCAAAATCATTATTTAGT GATAAATTGAAAATTGATATAAAAAATAATCTAAAAGATTATTCTAAAAAATTCGATGTT ATAGATGAAAAAATTAGAAACTCTAAAAAGAATCAATTAATTTCAGAAAGAAAAAATGTT GAAAATTCATTTAATGAAAAATTGGAGAAAATCACAAAATTATTTCAATCCTTTAAAGAA TATGAACTGTTCAGAAGAAATTGGGAAACATTTGAAAGCCAATTTGAATGGGAAGAAAAA ACAGTTGTCATCGAACATGTCCTTTCTGTTAAGCAGGAAATCTTCGCATAG
  • Download Fasta

  • Fasta :-

    MVKVEESELSDKELVDFLSDDSDDGNETLLNKKYAGKEALITLETKFPKIVTILGIPKVE EEKHSRLAEVLKKLFIRHLSAKISDSSIMNIKIHMPVDDEKKTKGICFVTFHDSFQANEA VKVLNKLKLDAKHLLTASKMDDIENIINRDERVMPINVVGFTREKIRWWLYDEKCREQFI VRYDSHFEVHWLDPLEKEPQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF EKLIRLQHKSVKDISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEYSP REKIFPHFLWSPDDKYIACIGKQKEVYIYELPSMLLLEDHEKKRTPLKYSVVKEFDWSPV DNIVAIWIPETNNTPGTLILVEIPSRKELVSRKIYDVSQASIHWQSKGDYLCLKTTIVKK IGKKGKKEHTQLEIFRMREKNIPVDNIQIEGVKTKQFHWEESNSNRFALIVRDEATSRQQ IRFYKILNKGATRNVKWTSTFDINNQMNFMKWSPQGTFFILASLLSEGMLYFCFLNSNDE VEVIHKDEHLLVNSVAWSNCGRYLVTSVSNLSGISSSNYKEENSETGFYIWTFQGRCLMT VKKPSFYQFFFRPHPKSLFSDKLKIDIKNNLKDYSKKFDVIDEKIRNSKKNQLISERKNV ENSFNEKLEKITKLFQSFKEYELFRRNWETFESQFEWEEKTVVIEHVLSVKQEIFA

  • title: polypeptide substrate binding site
  • coordinates: I53,I56,K63,R66,L67,E69,V70,L71,K73,L74,R77,V123,L124,N125,K126,K128,L129,L134,L135
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1233100250 SLQHKSVKDI0.997unspPCHAS_1233100250 SLQHKSVKDI0.997unspPCHAS_1233100250 SLQHKSVKDI0.997unspPCHAS_1233100257 SDISFSPNEN0.991unspPCHAS_1233100299 STPEYSPREK0.996unspPCHAS_1233100358 SEFDWSPVDN0.994unspPCHAS_1233100648 SKIRNSKKNQ0.997unspPCHAS_1233100677 SKLFQSFKEY0.994unspPCHAS_123310010 SESELSDKEL0.997unspPCHAS_1233100185 SVRYDSHFEV0.993unsp

PCHAS_123310      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India