PCHAS_1238300 | mitochondrial-processing peptidase subunit alpha, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1238300OTHER0.9913470.0000910.008562
No Results

  • Fasta :-

    >PCHAS_1238300 MNTNIQKLKLVLNKTKFGKKSYSHDASKLKRNPNLEKLYTGDKHDFSKVIFKKEQIEDVI KEVKFDYYYFNEGKKNKYKDIPLNVSIIKESDIPPYKPVDDKLNFSILENDLKIISTNKN SGVCSIGLYIKCGSRYEEISDKINEQGMSVMIENMAFHSTAHLSHLRAIKSLEKIGANVS CNAFREHIVYTCECLNEYLPVVINLLIGNVLFPRFLSWEMKNNVNRLNTMRAKLFENNEM YITELLHNTAWYNNTLGNKLYVSESNIENYTSENLRNFMLKHFSPKNMTLVGVNVDHNEL TKWTSRAFQDYVPIPYVKQNEVTPNYTGGFVSVEDKNIKKTNIAIAYETKGGWKTSDMIT LTVLQTLMGGGGSFSTGGPGKGMYSRLFLNVLNNYNFIESCMAFSTQHSDTGLFGLYFTG DPANTKDIINSMALEFHKMNKCTDEELNRAKKSLKSFMWMSLEYKSILMEDIARQMMILN RILSGKQLCDAIDAVTKEDINRVVSQFLKTKPTVVVYGNISHSPHYDEICKMLG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1238300.fa Sequence name : PCHAS_1238300 Sequence length : 534 VALUES OF COMPUTED PARAMETERS Coef20 : 3.742 CoefTot : -1.291 ChDiff : 9 ZoneTo : 24 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.688 1.653 0.160 0.611 MesoH : 0.165 0.444 -0.249 0.259 MuHd_075 : 20.446 14.225 7.088 4.887 MuHd_095 : 13.322 10.934 5.710 2.694 MuHd_100 : 20.980 14.037 7.731 4.667 MuHd_105 : 31.247 18.541 10.529 6.618 Hmax_075 : 5.400 4.400 -0.660 3.180 Hmax_095 : -6.200 5.900 -4.036 0.580 Hmax_100 : 0.900 14.000 -1.338 2.490 Hmax_105 : 12.800 13.900 2.629 5.390 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8643 0.1357 DFMC : 0.7923 0.2077
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 534 PCHAS_1238300 MNTNIQKLKLVLNKTKFGKKSYSHDASKLKRNPNLEKLYTGDKHDFSKVIFKKEQIEDVIKEVKFDYYYFNEGKKNKYKD 80 IPLNVSIIKESDIPPYKPVDDKLNFSILENDLKIISTNKNSGVCSIGLYIKCGSRYEEISDKINEQGMSVMIENMAFHST 160 AHLSHLRAIKSLEKIGANVSCNAFREHIVYTCECLNEYLPVVINLLIGNVLFPRFLSWEMKNNVNRLNTMRAKLFENNEM 240 YITELLHNTAWYNNTLGNKLYVSESNIENYTSENLRNFMLKHFSPKNMTLVGVNVDHNELTKWTSRAFQDYVPIPYVKQN 320 EVTPNYTGGFVSVEDKNIKKTNIAIAYETKGGWKTSDMITLTVLQTLMGGGGSFSTGGPGKGMYSRLFLNVLNNYNFIES 400 CMAFSTQHSDTGLFGLYFTGDPANTKDIINSMALEFHKMNKCTDEELNRAKKSLKSFMWMSLEYKSILMEDIARQMMILN 480 RILSGKQLCDAIDAVTKEDINRVVSQFLKTKPTVVVYGNISHSPHYDEICKMLG 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ...................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1238300 7 MNTNIQK|LK 0.057 . PCHAS_1238300 9 TNIQKLK|LV 0.083 . PCHAS_1238300 14 LKLVLNK|TK 0.062 . PCHAS_1238300 16 LVLNKTK|FG 0.066 . PCHAS_1238300 19 NKTKFGK|KS 0.066 . PCHAS_1238300 20 KTKFGKK|SY 0.124 . PCHAS_1238300 28 YSHDASK|LK 0.057 . PCHAS_1238300 30 HDASKLK|RN 0.064 . PCHAS_1238300 31 DASKLKR|NP 0.138 . PCHAS_1238300 37 RNPNLEK|LY 0.062 . PCHAS_1238300 43 KLYTGDK|HD 0.058 . PCHAS_1238300 48 DKHDFSK|VI 0.086 . PCHAS_1238300 52 FSKVIFK|KE 0.062 . PCHAS_1238300 53 SKVIFKK|EQ 0.096 . PCHAS_1238300 61 QIEDVIK|EV 0.064 . PCHAS_1238300 64 DVIKEVK|FD 0.062 . PCHAS_1238300 74 YYFNEGK|KN 0.055 . PCHAS_1238300 75 YFNEGKK|NK 0.081 . PCHAS_1238300 77 NEGKKNK|YK 0.079 . PCHAS_1238300 79 GKKNKYK|DI 0.083 . PCHAS_1238300 89 LNVSIIK|ES 0.058 . PCHAS_1238300 97 SDIPPYK|PV 0.100 . PCHAS_1238300 102 YKPVDDK|LN 0.065 . PCHAS_1238300 113 ILENDLK|II 0.069 . PCHAS_1238300 119 KIISTNK|NS 0.061 . PCHAS_1238300 131 SIGLYIK|CG 0.067 . PCHAS_1238300 135 YIKCGSR|YE 0.078 . PCHAS_1238300 142 YEEISDK|IN 0.076 . PCHAS_1238300 167 AHLSHLR|AI 0.085 . PCHAS_1238300 170 SHLRAIK|SL 0.289 . PCHAS_1238300 174 AIKSLEK|IG 0.053 . PCHAS_1238300 185 VSCNAFR|EH 0.085 . PCHAS_1238300 214 GNVLFPR|FL 0.124 . PCHAS_1238300 221 FLSWEMK|NN 0.075 . PCHAS_1238300 226 MKNNVNR|LN 0.092 . PCHAS_1238300 231 NRLNTMR|AK 0.084 . PCHAS_1238300 233 LNTMRAK|LF 0.074 . PCHAS_1238300 259 NNTLGNK|LY 0.053 . PCHAS_1238300 276 YTSENLR|NF 0.085 . PCHAS_1238300 281 LRNFMLK|HF 0.115 . PCHAS_1238300 286 LKHFSPK|NM 0.076 . PCHAS_1238300 302 DHNELTK|WT 0.077 . PCHAS_1238300 306 LTKWTSR|AF 0.095 . PCHAS_1238300 318 VPIPYVK|QN 0.065 . PCHAS_1238300 336 FVSVEDK|NI 0.067 . PCHAS_1238300 339 VEDKNIK|KT 0.063 . PCHAS_1238300 340 EDKNIKK|TN 0.088 . PCHAS_1238300 350 AIAYETK|GG 0.068 . PCHAS_1238300 354 ETKGGWK|TS 0.061 . PCHAS_1238300 381 STGGPGK|GM 0.067 . PCHAS_1238300 386 GKGMYSR|LF 0.097 . PCHAS_1238300 426 GDPANTK|DI 0.072 . PCHAS_1238300 438 MALEFHK|MN 0.059 . PCHAS_1238300 441 EFHKMNK|CT 0.080 . PCHAS_1238300 449 TDEELNR|AK 0.071 . PCHAS_1238300 451 EELNRAK|KS 0.067 . PCHAS_1238300 452 ELNRAKK|SL 0.483 . PCHAS_1238300 455 RAKKSLK|SF 0.078 . PCHAS_1238300 465 WMSLEYK|SI 0.081 . PCHAS_1238300 474 LMEDIAR|QM 0.080 . PCHAS_1238300 481 QMMILNR|IL 0.106 . PCHAS_1238300 486 NRILSGK|QL 0.096 . PCHAS_1238300 497 AIDAVTK|ED 0.058 . PCHAS_1238300 502 TKEDINR|VV 0.174 . PCHAS_1238300 509 VVSQFLK|TK 0.062 . PCHAS_1238300 511 SQFLKTK|PT 0.070 . PCHAS_1238300 531 HYDEICK|ML 0.068 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1238300 ATGAACACAAATATACAAAAGCTGAAACTTGTTCTTAACAAAACAAAATTTGGTAAAAAA TCCTATAGTCATGATGCTTCCAAGTTAAAAAGAAATCCAAATTTAGAAAAATTATACACA GGGGATAAACATGATTTTAGCAAAGTTATATTTAAAAAAGAACAAATAGAGGACGTAATA AAAGAGGTCAAATTTGATTATTATTATTTTAATGAAGGAAAAAAAAACAAATATAAAGAT ATACCATTGAATGTTTCGATAATTAAAGAGTCCGACATACCACCTTATAAGCCTGTTGAT GACAAATTAAATTTTTCTATCCTTGAAAATGATTTAAAAATAATTTCGACCAATAAAAAT AGCGGAGTTTGTTCCATAGGATTATACATAAAATGTGGGTCCAGGTATGAAGAAATAAGC GACAAAATAAATGAACAGGGAATGAGTGTAATGATTGAAAATATGGCATTTCATAGTACT GCTCATTTATCCCATTTAAGAGCCATAAAAAGTTTAGAAAAAATAGGAGCCAATGTTAGC TGTAATGCTTTTCGAGAGCATATTGTATATACATGTGAATGCTTAAATGAATATTTACCA GTGGTTATAAATTTACTAATAGGGAATGTTTTATTTCCACGTTTTTTATCATGGGAAATG AAAAATAATGTTAACAGATTAAATACTATGAGAGCAAAATTGTTTGAGAACAACGAAATG TATATAACAGAATTATTACATAATACAGCTTGGTATAATAATACATTAGGTAATAAATTA TATGTATCTGAATCGAATATAGAAAATTATACATCTGAAAATTTAAGAAATTTTATGCTA AAGCATTTTTCCCCTAAAAATATGACATTAGTTGGTGTCAATGTTGATCACAATGAATTA ACAAAATGGACTTCCAGAGCTTTTCAAGATTATGTTCCAATACCATATGTTAAACAAAAT GAAGTAACTCCAAATTATACTGGAGGTTTTGTAAGTGTTGAAGATAAAAATATAAAAAAA ACCAACATTGCTATAGCATATGAAACCAAAGGAGGATGGAAAACATCTGATATGATCACA TTAACAGTTTTACAAACATTGATGGGTGGTGGTGGTTCTTTTTCGACTGGAGGACCAGGA AAAGGAATGTATTCTCGATTATTTTTAAATGTTTTAAATAATTACAACTTTATAGAATCT TGTATGGCCTTTAGCACCCAACATTCAGATACTGGGCTTTTTGGATTATATTTTACAGGA GATCCAGCAAATACTAAAGATATAATTAATAGTATGGCATTAGAATTTCATAAAATGAAT AAATGCACTGATGAAGAATTAAATCGAGCTAAAAAAAGTTTAAAAAGCTTTATGTGGATG AGCTTAGAATATAAATCAATACTAATGGAAGATATAGCTAGACAAATGATGATTCTAAAT AGGATACTATCCGGAAAACAATTATGTGATGCTATTGATGCTGTAACTAAAGAAGATATT AATAGAGTTGTTTCCCAATTTTTAAAAACCAAACCTACTGTGGTTGTATATGGAAACATT AGCCACTCCCCACACTATGATGAAATATGCAAAATGCTCGGATAA
  • Download Fasta

  • Fasta :-

    MNTNIQKLKLVLNKTKFGKKSYSHDASKLKRNPNLEKLYTGDKHDFSKVIFKKEQIEDVI KEVKFDYYYFNEGKKNKYKDIPLNVSIIKESDIPPYKPVDDKLNFSILENDLKIISTNKN SGVCSIGLYIKCGSRYEEISDKINEQGMSVMIENMAFHSTAHLSHLRAIKSLEKIGANVS CNAFREHIVYTCECLNEYLPVVINLLIGNVLFPRFLSWEMKNNVNRLNTMRAKLFENNEM YITELLHNTAWYNNTLGNKLYVSESNIENYTSENLRNFMLKHFSPKNMTLVGVNVDHNEL TKWTSRAFQDYVPIPYVKQNEVTPNYTGGFVSVEDKNIKKTNIAIAYETKGGWKTSDMIT LTVLQTLMGGGGSFSTGGPGKGMYSRLFLNVLNNYNFIESCMAFSTQHSDTGLFGLYFTG DPANTKDIINSMALEFHKMNKCTDEELNRAKKSLKSFMWMSLEYKSILMEDIARQMMILN RILSGKQLCDAIDAVTKEDINRVVSQFLKTKPTVVVYGNISHSPHYDEICKMLG

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1238300284 SLKHFSPKNM0.991unsp

PCHAS_123830      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India