PCHAS_1242400 | ubiquitin carboxyl-terminal hydrolase 14, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1242400OTHER0.9999320.0000270.000041
No Results

  • Fasta :-

    >PCHAS_1242400 MTIVKVTVKWKTNVYNDLELNINEPITSFKEQLWKLTAVPTEKQKLMYKGLIKDDTDLHT LNIKNNDKIMLVGSSEALAEKPDKITFLEDLSKEDKEKFNEDKNIIFEDQGIVNLGNTCY FNAVLQFLTSFNDLGEFLCNIKKKQKLGFRSNKDILFDCYIHFSQTFGKSSEPYVPLELL KAFRDVFPKFKTVNVRTKQYAQQDAEECMNAILTSLNEHTESKIIDKLFSFKTVGKIKCI EQNDQDDDPNKKKESTENSNSQTTEEQQDDSFELTEEFHNKLICYMGTQNTPVNHLHEGI RLSLIEKIKKKKNENDKEDTLYEKKSEIDSLPPYLIVHFLRFESKRIVDTSNTVSVVTAK ICRKVSFPEIFDIYDFCSDKVKADLKIARNIIMNRKDIKTPNAQEETNECDNPPTQLDEK KEFVEIPNGEYELISVITHKGRNEESGHYIAWKKMRNRINKDSEYDDNGPRVKKNKSNNE PSWFKMDDDKVSLHNFSSLDLFGGCSDYNTAVLLLYKRKTLSCTQDELNKNSA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1242400.fa Sequence name : PCHAS_1242400 Sequence length : 533 VALUES OF COMPUTED PARAMETERS Coef20 : 3.992 CoefTot : -0.764 ChDiff : -9 ZoneTo : 16 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.900 1.047 -0.021 0.454 MesoH : -1.019 0.133 -0.523 0.129 MuHd_075 : 5.381 13.103 3.833 2.786 MuHd_095 : 26.643 18.954 8.947 6.260 MuHd_100 : 23.338 20.166 7.920 6.195 MuHd_105 : 15.191 16.154 5.092 4.680 Hmax_075 : 1.167 13.500 -1.227 3.520 Hmax_095 : 5.775 10.800 -0.269 3.946 Hmax_100 : 5.400 11.600 -0.225 4.560 Hmax_105 : 6.400 13.700 -0.157 4.037 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8672 0.1328 DFMC : 0.8704 0.1296
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 533 PCHAS_1242400 MTIVKVTVKWKTNVYNDLELNINEPITSFKEQLWKLTAVPTEKQKLMYKGLIKDDTDLHTLNIKNNDKIMLVGSSEALAE 80 KPDKITFLEDLSKEDKEKFNEDKNIIFEDQGIVNLGNTCYFNAVLQFLTSFNDLGEFLCNIKKKQKLGFRSNKDILFDCY 160 IHFSQTFGKSSEPYVPLELLKAFRDVFPKFKTVNVRTKQYAQQDAEECMNAILTSLNEHTESKIIDKLFSFKTVGKIKCI 240 EQNDQDDDPNKKKESTENSNSQTTEEQQDDSFELTEEFHNKLICYMGTQNTPVNHLHEGIRLSLIEKIKKKKNENDKEDT 320 LYEKKSEIDSLPPYLIVHFLRFESKRIVDTSNTVSVVTAKICRKVSFPEIFDIYDFCSDKVKADLKIARNIIMNRKDIKT 400 PNAQEETNECDNPPTQLDEKKEFVEIPNGEYELISVITHKGRNEESGHYIAWKKMRNRINKDSEYDDNGPRVKKNKSNNE 480 PSWFKMDDDKVSLHNFSSLDLFGGCSDYNTAVLLLYKRKTLSCTQDELNKNSA 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .........................P...................................................... 400 ................................................................................ 480 ..................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1242400 5 --MTIVK|VT 0.056 . PCHAS_1242400 9 IVKVTVK|WK 0.064 . PCHAS_1242400 11 KVTVKWK|TN 0.058 . PCHAS_1242400 30 EPITSFK|EQ 0.068 . PCHAS_1242400 35 FKEQLWK|LT 0.058 . PCHAS_1242400 43 TAVPTEK|QK 0.058 . PCHAS_1242400 45 VPTEKQK|LM 0.065 . PCHAS_1242400 49 KQKLMYK|GL 0.068 . PCHAS_1242400 53 MYKGLIK|DD 0.064 . PCHAS_1242400 64 LHTLNIK|NN 0.061 . PCHAS_1242400 68 NIKNNDK|IM 0.056 . PCHAS_1242400 81 SEALAEK|PD 0.057 . PCHAS_1242400 84 LAEKPDK|IT 0.065 . PCHAS_1242400 93 FLEDLSK|ED 0.058 . PCHAS_1242400 96 DLSKEDK|EK 0.068 . PCHAS_1242400 98 SKEDKEK|FN 0.090 . PCHAS_1242400 103 EKFNEDK|NI 0.068 . PCHAS_1242400 142 EFLCNIK|KK 0.054 . PCHAS_1242400 143 FLCNIKK|KQ 0.076 . PCHAS_1242400 144 LCNIKKK|QK 0.135 . PCHAS_1242400 146 NIKKKQK|LG 0.063 . PCHAS_1242400 150 KQKLGFR|SN 0.144 . PCHAS_1242400 153 LGFRSNK|DI 0.127 . PCHAS_1242400 169 FSQTFGK|SS 0.116 . PCHAS_1242400 181 VPLELLK|AF 0.069 . PCHAS_1242400 184 ELLKAFR|DV 0.200 . PCHAS_1242400 189 FRDVFPK|FK 0.080 . PCHAS_1242400 191 DVFPKFK|TV 0.073 . PCHAS_1242400 196 FKTVNVR|TK 0.086 . PCHAS_1242400 198 TVNVRTK|QY 0.086 . PCHAS_1242400 223 NEHTESK|II 0.072 . PCHAS_1242400 227 ESKIIDK|LF 0.065 . PCHAS_1242400 232 DKLFSFK|TV 0.092 . PCHAS_1242400 236 SFKTVGK|IK 0.069 . PCHAS_1242400 238 KTVGKIK|CI 0.076 . PCHAS_1242400 251 QDDDPNK|KK 0.067 . PCHAS_1242400 252 DDDPNKK|KE 0.083 . PCHAS_1242400 253 DDPNKKK|ES 0.094 . PCHAS_1242400 281 TEEFHNK|LI 0.085 . PCHAS_1242400 301 HLHEGIR|LS 0.071 . PCHAS_1242400 307 RLSLIEK|IK 0.062 . PCHAS_1242400 309 SLIEKIK|KK 0.063 . PCHAS_1242400 310 LIEKIKK|KK 0.079 . PCHAS_1242400 311 IEKIKKK|KN 0.104 . PCHAS_1242400 312 EKIKKKK|NE 0.144 . PCHAS_1242400 317 KKNENDK|ED 0.066 . PCHAS_1242400 324 EDTLYEK|KS 0.054 . PCHAS_1242400 325 DTLYEKK|SE 0.109 . PCHAS_1242400 341 LIVHFLR|FE 0.121 . PCHAS_1242400 345 FLRFESK|RI 0.066 . PCHAS_1242400 346 LRFESKR|IV 0.512 *ProP* PCHAS_1242400 360 VSVVTAK|IC 0.069 . PCHAS_1242400 363 VTAKICR|KV 0.114 . PCHAS_1242400 364 TAKICRK|VS 0.092 . PCHAS_1242400 380 YDFCSDK|VK 0.054 . PCHAS_1242400 382 FCSDKVK|AD 0.070 . PCHAS_1242400 386 KVKADLK|IA 0.068 . PCHAS_1242400 389 ADLKIAR|NI 0.101 . PCHAS_1242400 395 RNIIMNR|KD 0.085 . PCHAS_1242400 396 NIIMNRK|DI 0.095 . PCHAS_1242400 399 MNRKDIK|TP 0.079 . PCHAS_1242400 420 PTQLDEK|KE 0.060 . PCHAS_1242400 421 TQLDEKK|EF 0.112 . PCHAS_1242400 440 ISVITHK|GR 0.067 . PCHAS_1242400 442 VITHKGR|NE 0.090 . PCHAS_1242400 453 GHYIAWK|KM 0.062 . PCHAS_1242400 454 HYIAWKK|MR 0.098 . PCHAS_1242400 456 IAWKKMR|NR 0.102 . PCHAS_1242400 458 WKKMRNR|IN 0.114 . PCHAS_1242400 461 MRNRINK|DS 0.283 . PCHAS_1242400 471 YDDNGPR|VK 0.064 . PCHAS_1242400 473 DNGPRVK|KN 0.058 . PCHAS_1242400 474 NGPRVKK|NK 0.362 . PCHAS_1242400 476 PRVKKNK|SN 0.089 . PCHAS_1242400 485 NEPSWFK|MD 0.064 . PCHAS_1242400 490 FKMDDDK|VS 0.061 . PCHAS_1242400 517 AVLLLYK|RK 0.052 . PCHAS_1242400 518 VLLLYKR|KT 0.100 . PCHAS_1242400 519 LLLYKRK|TL 0.097 . PCHAS_1242400 530 TQDELNK|NS 0.058 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1242400 ATGACAATAGTTAAGGTAACAGTCAAATGGAAAACAAATGTTTACAATGATCTCGAGCTT AACATAAACGAACCAATAACATCATTTAAAGAGCAGTTATGGAAACTAACTGCGGTTCCC ACAGAAAAGCAAAAGCTAATGTACAAGGGGCTCATAAAAGATGACACCGATTTACACACA TTGAACATAAAAAATAATGACAAAATTATGTTAGTAGGGTCCTCAGAAGCATTAGCTGAA AAACCTGATAAAATTACATTTTTAGAAGATTTATCAAAAGAAGATAAAGAAAAATTTAAC GAAGATAAAAATATTATTTTCGAAGATCAAGGTATAGTAAATTTAGGGAACACTTGCTAT TTTAATGCCGTTTTGCAATTTTTAACTTCTTTTAATGACTTAGGAGAATTTTTATGTAAT ATAAAAAAAAAACAAAAACTTGGATTCAGATCAAATAAAGATATATTATTTGATTGTTAT ATACATTTTTCTCAAACATTTGGAAAATCATCGGAGCCATATGTTCCTTTAGAATTATTA AAAGCCTTTAGAGATGTTTTTCCTAAATTTAAAACGGTCAATGTAAGAACAAAACAATAT GCACAACAAGATGCAGAAGAATGTATGAATGCCATTCTTACTTCCTTAAATGAACATACA GAATCGAAAATTATTGATAAGCTTTTCTCATTTAAAACAGTTGGAAAAATTAAATGTATA GAACAAAATGATCAGGATGATGATCCAAATAAAAAAAAAGAATCAACAGAAAATTCAAAT TCACAAACAACAGAAGAACAACAAGATGACAGCTTCGAACTAACAGAAGAATTTCATAAC AAATTAATTTGCTATATGGGAACACAAAATACCCCAGTAAATCATCTTCATGAAGGTATT AGATTATCGTTAATTGAAAAAATTAAAAAAAAAAAAAATGAAAATGATAAAGAAGATACA TTATATGAAAAAAAATCAGAAATTGATTCATTACCTCCTTATTTAATTGTGCATTTCTTA CGTTTTGAATCGAAACGAATTGTTGACACAAGTAATACTGTTTCTGTTGTTACTGCCAAA ATATGTAGAAAAGTTTCCTTCCCAGAAATATTTGATATTTATGATTTCTGTTCCGATAAA GTAAAAGCTGATCTAAAAATCGCTCGAAATATTATTATGAACAGAAAGGATATTAAAACA CCCAATGCACAGGAAGAAACAAATGAATGTGATAATCCACCTACTCAGCTTGATGAAAAA AAAGAATTCGTTGAAATTCCCAATGGAGAATACGAATTAATATCAGTTATTACACATAAA GGAAGAAATGAAGAGAGTGGTCATTATATTGCATGGAAAAAAATGCGAAACCGTATAAAT AAAGATTCAGAATATGATGATAATGGTCCAAGAGTTAAAAAAAATAAAAGTAATAATGAA CCATCATGGTTTAAAATGGATGATGATAAAGTAAGTCTTCACAACTTTTCCTCTCTTGAT TTATTTGGAGGATGCAGTGATTATAATACAGCTGTATTATTATTATACAAAAGGAAAACA CTATCTTGCACACAAGATGAATTAAACAAGAATTCTGCCTAA
  • Download Fasta

  • Fasta :-

    MTIVKVTVKWKTNVYNDLELNINEPITSFKEQLWKLTAVPTEKQKLMYKGLIKDDTDLHT LNIKNNDKIMLVGSSEALAEKPDKITFLEDLSKEDKEKFNEDKNIIFEDQGIVNLGNTCY FNAVLQFLTSFNDLGEFLCNIKKKQKLGFRSNKDILFDCYIHFSQTFGKSSEPYVPLELL KAFRDVFPKFKTVNVRTKQYAQQDAEECMNAILTSLNEHTESKIIDKLFSFKTVGKIKCI EQNDQDDDPNKKKESTENSNSQTTEEQQDDSFELTEEFHNKLICYMGTQNTPVNHLHEGI RLSLIEKIKKKKNENDKEDTLYEKKSEIDSLPPYLIVHFLRFESKRIVDTSNTVSVVTAK ICRKVSFPEIFDIYDFCSDKVKADLKIARNIIMNRKDIKTPNAQEETNECDNPPTQLDEK KEFVEIPNGEYELISVITHKGRNEESGHYIAWKKMRNRINKDSEYDDNGPRVKKNKSNNE PSWFKMDDDKVSLHNFSSLDLFGGCSDYNTAVLLLYKRKTLSCTQDELNKNSA

  • title: Active Site
  • coordinates: N114,C119,H448,D488
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1242400326 SYEKKSEIDS0.995unspPCHAS_1242400326 SYEKKSEIDS0.995unspPCHAS_1242400326 SYEKKSEIDS0.995unspPCHAS_1242400463 SINKDSEYDD0.992unspPCHAS_124240092 SLEDLSKEDK0.997unspPCHAS_1242400255 SKKKESTENS0.99unsp

PCHAS_124240      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India