PCHAS_1304600 | proteasome subunit alpha type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1304600OTHER0.9999530.0000210.000025
No Results

  • Fasta :-

    >PCHAS_1304600 MYRNLYDTDNIIYSPEGRLYQVEYANEATKQGTCAVAIKSKEFVVVCGLKKCISKLSYHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLTHKFLFDENINVEKLVKKVADKYQKNT QKSSKRAFGVGLIISGYFNEPHIFETKSNGSYFEYEALSFGARSHASKTYLEKNLHLFEE SSLDDLIIHCLKALKCSLSSETELTADNTSLAIVGKDKPWEEMPYVELIDYLTKVNSEKR TEDSQDNVENSGN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1304600.fa Sequence name : PCHAS_1304600 Sequence length : 253 VALUES OF COMPUTED PARAMETERS Coef20 : 3.351 CoefTot : -0.191 ChDiff : -4 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.735 1.371 0.034 0.572 MesoH : -0.997 0.099 -0.511 0.145 MuHd_075 : 25.902 13.951 5.146 6.804 MuHd_095 : 26.535 15.461 5.371 6.772 MuHd_100 : 26.539 17.309 5.804 6.751 MuHd_105 : 23.751 16.944 5.783 5.088 Hmax_075 : 4.200 4.433 -1.277 3.197 Hmax_095 : -2.400 1.600 -2.886 2.188 Hmax_100 : 8.600 8.900 0.179 3.830 Hmax_105 : 0.400 3.100 -1.493 2.570 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6817 0.3183 DFMC : 0.8236 0.1764
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 253 PCHAS_1304600 MYRNLYDTDNIIYSPEGRLYQVEYANEATKQGTCAVAIKSKEFVVVCGLKKCISKLSYHQEKLFKIDDYIGVTMSGITSD 80 AKVLTKYMRNECLTHKFLFDENINVEKLVKKVADKYQKNTQKSSKRAFGVGLIISGYFNEPHIFETKSNGSYFEYEALSF 160 GARSHASKTYLEKNLHLFEESSLDDLIIHCLKALKCSLSSETELTADNTSLAIVGKDKPWEEMPYVELIDYLTKVNSEKR 240 TEDSQDNVENSGN 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1304600 3 ----MYR|NL 0.090 . PCHAS_1304600 18 IYSPEGR|LY 0.090 . PCHAS_1304600 30 YANEATK|QG 0.064 . PCHAS_1304600 39 TCAVAIK|SK 0.099 . PCHAS_1304600 41 AVAIKSK|EF 0.061 . PCHAS_1304600 50 VVVCGLK|KC 0.057 . PCHAS_1304600 51 VVCGLKK|CI 0.090 . PCHAS_1304600 55 LKKCISK|LS 0.069 . PCHAS_1304600 62 LSYHQEK|LF 0.062 . PCHAS_1304600 65 HQEKLFK|ID 0.073 . PCHAS_1304600 82 GITSDAK|VL 0.062 . PCHAS_1304600 86 DAKVLTK|YM 0.065 . PCHAS_1304600 89 VLTKYMR|NE 0.071 . PCHAS_1304600 96 NECLTHK|FL 0.070 . PCHAS_1304600 107 ENINVEK|LV 0.074 . PCHAS_1304600 110 NVEKLVK|KV 0.065 . PCHAS_1304600 111 VEKLVKK|VA 0.140 . PCHAS_1304600 115 VKKVADK|YQ 0.064 . PCHAS_1304600 118 VADKYQK|NT 0.058 . PCHAS_1304600 122 YQKNTQK|SS 0.085 . PCHAS_1304600 125 NTQKSSK|RA 0.081 . PCHAS_1304600 126 TQKSSKR|AF 0.336 . PCHAS_1304600 147 PHIFETK|SN 0.088 . PCHAS_1304600 163 ALSFGAR|SH 0.126 . PCHAS_1304600 168 ARSHASK|TY 0.080 . PCHAS_1304600 173 SKTYLEK|NL 0.067 . PCHAS_1304600 192 LIIHCLK|AL 0.064 . PCHAS_1304600 195 HCLKALK|CS 0.057 . PCHAS_1304600 216 SLAIVGK|DK 0.087 . PCHAS_1304600 218 AIVGKDK|PW 0.070 . PCHAS_1304600 234 LIDYLTK|VN 0.061 . PCHAS_1304600 239 TKVNSEK|RT 0.087 . PCHAS_1304600 240 KVNSEKR|TE 0.177 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1304600 ATGTATAGAAATTTGTATGACACAGACAATATTATTTATTCTCCTGAAGGGAGGTTATAC CAAGTAGAATATGCAAATGAAGCAACAAAACAAGGAACTTGTGCAGTGGCTATAAAATCT AAGGAGTTTGTGGTAGTTTGTGGTTTAAAGAAATGTATTAGTAAACTTTCCTATCATCAA GAAAAGCTATTTAAAATAGATGACTATATAGGTGTAACCATGAGTGGCATAACTTCGGAT GCCAAAGTATTAACGAAATATATGAGAAATGAATGCTTAACTCATAAATTTTTATTTGAT GAAAATATTAATGTAGAAAAATTAGTTAAAAAAGTAGCAGATAAATATCAAAAAAATACC CAAAAAAGTAGTAAAAGAGCTTTTGGTGTTGGATTAATAATATCTGGATATTTTAATGAA CCACACATTTTTGAAACTAAATCAAATGGATCTTATTTTGAATATGAAGCATTATCCTTT GGTGCAAGATCTCATGCATCAAAAACATATTTAGAAAAAAATTTACATTTATTTGAAGAA TCATCATTAGATGATTTGATTATACACTGCTTAAAAGCTTTGAAATGCTCTCTTTCTAGT GAGACCGAACTAACTGCTGATAACACGTCTCTAGCTATTGTTGGAAAAGATAAACCATGG GAAGAAATGCCATATGTCGAATTGATTGATTATTTGACAAAGGTAAATAGTGAAAAAAGG ACTGAAGATAGTCAGGATAATGTTGAAAACAGTGGAAACTAA
  • Download Fasta

  • Fasta :-

    MYRNLYDTDNIIYSPEGRLYQVEYANEATKQGTCAVAIKSKEFVVVCGLKKCISKLSYHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLTHKFLFDENINVEKLVKKVADKYQKNT QKSSKRAFGVGLIISGYFNEPHIFETKSNGSYFEYEALSFGARSHASKTYLEKNLHLFEE SSLDDLIIHCLKALKCSLSSETELTADNTSLAIVGKDKPWEEMPYVELIDYLTKVNSEKR TEDSQDNVENSGN

  • title: active site
  • coordinates: T33,L49,K51,K62,A162
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1304600237 STKVNSEKRT0.996unspPCHAS_1304600237 STKVNSEKRT0.996unspPCHAS_1304600237 STKVNSEKRT0.996unspPCHAS_1304600123 SNTQKSSKRA0.997unspPCHAS_1304600151 SKSNGSYFEY0.994unsp

PCHAS_130460      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India