PCHAS_1332900 | ATP-dependent zinc metalloprotease FTSH, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1332900OTHER0.9158670.0005030.083630
No Results

  • Fasta :-

    >PCHAS_1332900 MLLLRNIVVLDLKRSNFLYIKNIPDVNRLLNRKRYFSVLNTERLDRLKREIRYKPNDNFL ILQFYKEANLHNPNEVIKHYENSSFVKNESTTKEYIKALVYTNKLKYTNLNNIKYDSESN FYRRSMEDGNNNISGINSERSNIYETHNINIDPNYSNMSHSGHTNNYNDKKNGIHSEVFS LQIDPKIPLKVSLINANKKGIWGVVKSTIGFLILVAAASVYLEGVSQNVQKGIGVSNKKV VPVENVKVTLADVKGCDEVKQELQEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLI ARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQTAKKHAPCIVFIDEIDAVGSKRS NRDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDI NGRYEILRMYSNKILLSRDVDLNVLARRTVGMTGADLKNILNIAAIKCSVEGKKSVDMNS IEQAFDRVVVGLQRKSPLSDEEKNITAYHEGGHTLVNFYTEGSDPVHKATIMPRGMSLGV TWKIPVTDKYSQKIKDIQSEIDVLMGGMVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVM NYGVGINEENISMFLQDKKNISEDMKIKIDKSIQRILLDSYNRAKTVLNQHIDELHRVAS ALVEFETLTNEEIKLAMQGKNDQIRKNRELKQKEFNLKDNRIS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1332900.fa Sequence name : PCHAS_1332900 Sequence length : 703 VALUES OF COMPUTED PARAMETERS Coef20 : 4.683 CoefTot : -0.189 ChDiff : 13 ZoneTo : 41 KR : 8 DE : 2 CleavSite : 44 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.559 2.059 0.269 0.751 MesoH : -0.438 0.562 -0.376 0.268 MuHd_075 : 28.979 24.468 7.017 8.051 MuHd_095 : 34.494 18.155 8.808 7.252 MuHd_100 : 39.350 19.619 9.407 8.339 MuHd_105 : 41.389 28.389 10.719 9.494 Hmax_075 : 10.325 19.950 -1.597 5.775 Hmax_095 : 6.400 10.700 -1.350 4.000 Hmax_100 : 1.300 8.100 -1.076 3.700 Hmax_105 : 7.117 15.100 1.064 2.980 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1216 0.8784 DFMC : 0.3371 0.6629 This protein is probably imported in mitochondria. f(Ser) = 0.0488 f(Arg) = 0.1220 CMi = 0.20263 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 703 PCHAS_1332900 MLLLRNIVVLDLKRSNFLYIKNIPDVNRLLNRKRYFSVLNTERLDRLKREIRYKPNDNFLILQFYKEANLHNPNEVIKHY 80 ENSSFVKNESTTKEYIKALVYTNKLKYTNLNNIKYDSESNFYRRSMEDGNNNISGINSERSNIYETHNINIDPNYSNMSH 160 SGHTNNYNDKKNGIHSEVFSLQIDPKIPLKVSLINANKKGIWGVVKSTIGFLILVAAASVYLEGVSQNVQKGIGVSNKKV 240 VPVENVKVTLADVKGCDEVKQELQEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEF 320 EEMFVGVGARRIRELFQTAKKHAPCIVFIDEIDAVGSKRSNRDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLD 400 KALVRPGRLDKTIVVPLPDINGRYEILRMYSNKILLSRDVDLNVLARRTVGMTGADLKNILNIAAIKCSVEGKKSVDMNS 480 IEQAFDRVVVGLQRKSPLSDEEKNITAYHEGGHTLVNFYTEGSDPVHKATIMPRGMSLGVTWKIPVTDKYSQKIKDIQSE 560 IDVLMGGMVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMNYGVGINEENISMFLQDKKNISEDMKIKIDKSIQRILLDS 640 YNRAKTVLNQHIDELHRVASALVEFETLTNEEIKLAMQGKNDQIRKNRELKQKEFNLKDNRIS 720 ................................................P............................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .........................................P...................................... 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1332900 5 --MLLLR|NI 0.064 . PCHAS_1332900 13 IVVLDLK|RS 0.050 . PCHAS_1332900 14 VVLDLKR|SN 0.150 . PCHAS_1332900 21 SNFLYIK|NI 0.063 . PCHAS_1332900 28 NIPDVNR|LL 0.082 . PCHAS_1332900 32 VNRLLNR|KR 0.075 . PCHAS_1332900 33 NRLLNRK|RY 0.084 . PCHAS_1332900 34 RLLNRKR|YF 0.185 . PCHAS_1332900 43 SVLNTER|LD 0.069 . PCHAS_1332900 46 NTERLDR|LK 0.159 . PCHAS_1332900 48 ERLDRLK|RE 0.058 . PCHAS_1332900 49 RLDRLKR|EI 0.523 *ProP* PCHAS_1332900 52 RLKREIR|YK 0.176 . PCHAS_1332900 54 KREIRYK|PN 0.074 . PCHAS_1332900 66 LILQFYK|EA 0.065 . PCHAS_1332900 78 NPNEVIK|HY 0.079 . PCHAS_1332900 87 ENSSFVK|NE 0.071 . PCHAS_1332900 93 KNESTTK|EY 0.066 . PCHAS_1332900 97 TTKEYIK|AL 0.062 . PCHAS_1332900 104 ALVYTNK|LK 0.069 . PCHAS_1332900 106 VYTNKLK|YT 0.061 . PCHAS_1332900 114 TNLNNIK|YD 0.068 . PCHAS_1332900 123 SESNFYR|RS 0.112 . PCHAS_1332900 124 ESNFYRR|SM 0.411 . PCHAS_1332900 140 SGINSER|SN 0.135 . PCHAS_1332900 170 TNNYNDK|KN 0.077 . PCHAS_1332900 171 NNYNDKK|NG 0.109 . PCHAS_1332900 186 SLQIDPK|IP 0.061 . PCHAS_1332900 190 DPKIPLK|VS 0.054 . PCHAS_1332900 198 SLINANK|KG 0.060 . PCHAS_1332900 199 LINANKK|GI 0.165 . PCHAS_1332900 206 GIWGVVK|ST 0.087 . PCHAS_1332900 231 VSQNVQK|GI 0.099 . PCHAS_1332900 238 GIGVSNK|KV 0.110 . PCHAS_1332900 239 IGVSNKK|VV 0.091 . PCHAS_1332900 247 VPVENVK|VT 0.058 . PCHAS_1332900 254 VTLADVK|GC 0.062 . PCHAS_1332900 260 KGCDEVK|QE 0.060 . PCHAS_1332900 271 EIIDYLK|NS 0.057 . PCHAS_1332900 275 YLKNSDK|FT 0.072 . PCHAS_1332900 278 NSDKFTK|IG 0.065 . PCHAS_1332900 282 FTKIGAK|LP 0.060 . PCHAS_1332900 285 IGAKLPK|GI 0.075 . PCHAS_1332900 297 GEPGTGK|TL 0.058 . PCHAS_1332900 302 GKTLIAR|AI 0.097 . PCHAS_1332900 330 FVGVGAR|RI 0.103 . PCHAS_1332900 331 VGVGARR|IR 0.096 . PCHAS_1332900 333 VGARRIR|EL 0.253 . PCHAS_1332900 340 ELFQTAK|KH 0.061 . PCHAS_1332900 341 LFQTAKK|HA 0.097 . PCHAS_1332900 358 IDAVGSK|RS 0.057 . PCHAS_1332900 359 DAVGSKR|SN 0.253 . PCHAS_1332900 362 GSKRSNR|DN 0.663 *ProP* PCHAS_1332900 368 RDNSAVR|MT 0.105 . PCHAS_1332900 401 FPQSLDK|AL 0.061 . PCHAS_1332900 405 LDKALVR|PG 0.073 . PCHAS_1332900 408 ALVRPGR|LD 0.195 . PCHAS_1332900 411 RPGRLDK|TI 0.134 . PCHAS_1332900 423 LPDINGR|YE 0.079 . PCHAS_1332900 428 GRYEILR|MY 0.119 . PCHAS_1332900 433 LRMYSNK|IL 0.069 . PCHAS_1332900 438 NKILLSR|DV 0.135 . PCHAS_1332900 447 DLNVLAR|RT 0.088 . PCHAS_1332900 448 LNVLARR|TV 0.229 . PCHAS_1332900 458 MTGADLK|NI 0.060 . PCHAS_1332900 467 LNIAAIK|CS 0.063 . PCHAS_1332900 473 KCSVEGK|KS 0.073 . PCHAS_1332900 474 CSVEGKK|SV 0.199 . PCHAS_1332900 487 IEQAFDR|VV 0.121 . PCHAS_1332900 494 VVVGLQR|KS 0.062 . PCHAS_1332900 495 VVGLQRK|SP 0.081 . PCHAS_1332900 503 PLSDEEK|NI 0.073 . PCHAS_1332900 528 GSDPVHK|AT 0.070 . PCHAS_1332900 534 KATIMPR|GM 0.113 . PCHAS_1332900 543 SLGVTWK|IP 0.060 . PCHAS_1332900 549 KIPVTDK|YS 0.068 . PCHAS_1332900 553 TDKYSQK|IK 0.072 . PCHAS_1332900 555 KYSQKIK|DI 0.106 . PCHAS_1332900 577 EEIIFGK|NN 0.065 . PCHAS_1332900 590 CSSDLQR|AT 0.147 . PCHAS_1332900 618 SMFLQDK|KN 0.061 . PCHAS_1332900 619 MFLQDKK|NI 0.097 . PCHAS_1332900 626 NISEDMK|IK 0.067 . PCHAS_1332900 628 SEDMKIK|ID 0.066 . PCHAS_1332900 631 MKIKIDK|SI 0.110 . PCHAS_1332900 635 IDKSIQR|IL 0.086 . PCHAS_1332900 643 LLDSYNR|AK 0.072 . PCHAS_1332900 645 DSYNRAK|TV 0.076 . PCHAS_1332900 657 HIDELHR|VA 0.088 . PCHAS_1332900 674 LTNEEIK|LA 0.083 . PCHAS_1332900 680 KLAMQGK|ND 0.066 . PCHAS_1332900 685 GKNDQIR|KN 0.098 . PCHAS_1332900 686 KNDQIRK|NR 0.081 . PCHAS_1332900 688 DQIRKNR|EL 0.414 . PCHAS_1332900 691 RKNRELK|QK 0.180 . PCHAS_1332900 693 NRELKQK|EF 0.068 . PCHAS_1332900 698 QKEFNLK|DN 0.076 . PCHAS_1332900 701 FNLKDNR|IS 0.075 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1332900 ATGTTACTCCTACGTAATATTGTTGTACTAGATTTGAAAAGGAGTAATTTTCTATATATA AAAAATATTCCAGATGTAAACAGATTATTAAATAGAAAAAGATACTTTAGTGTATTAAAT ACAGAAAGGCTAGATAGACTGAAAAGAGAAATTCGTTATAAGCCTAATGATAATTTTTTA ATATTACAATTTTATAAAGAAGCAAATTTACATAATCCGAATGAAGTTATAAAACATTAT GAAAACAGTAGTTTTGTTAAAAATGAAAGTACAACAAAAGAATATATAAAAGCATTAGTT TATACTAATAAACTAAAATATACCAATCTGAATAACATAAAATATGATAGCGAATCTAAT TTTTATAGAAGATCTATGGAGGATGGAAATAATAATATAAGCGGGATAAACAGTGAACGC TCAAATATATATGAAACACATAATATAAATATAGACCCTAATTATAGTAATATGTCCCAT TCAGGACATACAAATAATTATAATGATAAAAAAAATGGTATTCATTCCGAAGTGTTTAGT TTACAAATCGACCCCAAAATACCTTTAAAGGTGTCCTTAATAAATGCAAATAAAAAAGGC ATATGGGGGGTAGTTAAATCAACTATTGGGTTCTTAATTTTAGTTGCAGCAGCAAGCGTA TATTTAGAAGGGGTATCACAAAATGTTCAAAAGGGTATAGGCGTGTCAAATAAAAAAGTA GTTCCAGTAGAGAATGTAAAGGTAACTTTAGCAGATGTAAAAGGATGTGATGAAGTAAAA CAAGAACTTCAAGAAATAATTGATTATTTAAAAAATTCAGATAAATTTACTAAAATAGGT GCAAAATTGCCCAAAGGTATATTATTATCAGGTGAACCTGGAACAGGAAAAACATTAATT GCTAGGGCTATTGCAGGGGAAGCAAATGTACCCTTTATCCAAGCATCTGGTTCAGAATTT GAAGAAATGTTTGTTGGTGTAGGTGCAAGAAGAATAAGAGAGCTTTTTCAAACTGCAAAA AAGCATGCACCTTGTATTGTTTTTATTGATGAAATAGATGCAGTAGGTTCTAAAAGAAGT AATAGAGATAATAGCGCAGTTAGAATGACACTTAATCAATTATTAGTTGAATTAGATGGT TTTGAACAAAATGAAGGAATTGTCGTAATATGTGCTACCAACTTTCCACAAAGTTTAGAT AAAGCACTAGTTAGACCTGGTAGATTAGATAAAACTATTGTAGTACCATTACCTGATATT AATGGTAGATATGAAATTTTAAGAATGTATAGTAATAAAATCCTCTTATCAAGAGATGTC GATTTAAATGTTTTAGCTAGAAGAACTGTTGGTATGACAGGCGCGGATTTAAAAAATATA TTAAATATAGCAGCTATTAAATGTTCAGTAGAAGGGAAAAAATCAGTTGATATGAATTCT ATTGAACAAGCTTTTGATAGAGTTGTTGTTGGATTACAAAGAAAATCACCATTAAGTGAC GAAGAAAAAAATATAACAGCATATCATGAAGGAGGGCATACATTAGTTAATTTTTATACA GAAGGATCAGACCCTGTTCATAAAGCTACAATTATGCCAAGAGGTATGTCTTTAGGTGTT ACTTGGAAAATACCAGTTACTGACAAATATAGTCAAAAAATTAAAGACATTCAAAGTGAA ATTGATGTACTAATGGGAGGTATGGTATCAGAAGAAATTATTTTTGGAAAAAATAATGTA ACAACAGGATGCTCAAGTGATTTACAAAGAGCTACACATATTGCTCAATCACTTGTGATG AATTATGGAGTCGGTATAAACGAAGAAAATATATCTATGTTTTTACAAGATAAAAAAAAT ATTAGTGAAGATATGAAAATTAAAATAGATAAATCTATTCAAAGAATATTGTTAGATTCG TATAACAGAGCAAAAACAGTTTTAAATCAACATATTGATGAGTTACATAGAGTTGCTTCT GCATTAGTTGAATTTGAAACCTTAACAAATGAGGAAATTAAATTGGCTATGCAAGGAAAA AATGATCAAATACGAAAAAATAGAGAATTAAAACAAAAGGAATTTAATTTGAAGGACAAC AGAATTTCATAA
  • Download Fasta

  • Fasta :-

    MLLLRNIVVLDLKRSNFLYIKNIPDVNRLLNRKRYFSVLNTERLDRLKREIRYKPNDNFL ILQFYKEANLHNPNEVIKHYENSSFVKNESTTKEYIKALVYTNKLKYTNLNNIKYDSESN FYRRSMEDGNNNISGINSERSNIYETHNINIDPNYSNMSHSGHTNNYNDKKNGIHSEVFS LQIDPKIPLKVSLINANKKGIWGVVKSTIGFLILVAAASVYLEGVSQNVQKGIGVSNKKV VPVENVKVTLADVKGCDEVKQELQEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLI ARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQTAKKHAPCIVFIDEIDAVGSKRS NRDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDI NGRYEILRMYSNKILLSRDVDLNVLARRTVGMTGADLKNILNIAAIKCSVEGKKSVDMNS IEQAFDRVVVGLQRKSPLSDEEKNITAYHEGGHTLVNFYTEGSDPVHKATIMPRGMSLGV TWKIPVTDKYSQKIKDIQSEIDVLMGGMVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVM NYGVGINEENISMFLQDKKNISEDMKIKIDKSIQRILLDSYNRAKTVLNQHIDELHRVAS ALVEFETLTNEEIKLAMQGKNDQIRKNRELKQKEFNLKDNRIS

  • title: ATP binding site
  • coordinates: E292,P293,G294,T295,G296,K297,T298,L299,D350,N394
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1332900273 SYLKNSDKFT0.992unspPCHAS_1332900273 SYLKNSDKFT0.992unspPCHAS_1332900273 SYLKNSDKFT0.992unspPCHAS_1332900360 SGSKRSNRDN0.992unspPCHAS_1332900496 SLQRKSPLSD0.994unspPCHAS_1332900499 SKSPLSDEEK0.997unspPCHAS_133290037 SKRYFSVLNT0.996unspPCHAS_1332900125 SFYRRSMEDG0.992unsp

PCHAS_133290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India