PCHAS_1417300 | U4/U6.U5 tri-snRNP-associated protein 2, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1417300OTHER0.9999970.0000010.000002
No Results

  • Fasta :-

    >PCHAS_1417300 MPRKPEKKIKNDDDDGVVPKRRKNEKNKNSSETETNAKNNLNKREQIDNNINDKNESYNK TTKNNENDSINNTSDNNKIRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACLVCGIYF QGIGRGTYAYTHALEKNHYVFINLETCKTCCIPENYEIHDASLNDIKYFLKPVYNKEQVE HLCNNLILGKSLDGADFFPGCVGLNNLKHTDYCNVIIQLLCCIVPLRNMLLLYESKQNIA KNLIVVLAELLKKIYNPKNFKGVVSPHEFLQAVGIESKKNFKIGTKNDPLNFFLWIINKI HRHSEKKLQKKKKNIPNQTNKQNNLIDNNDISKNGHPKNDEGVKKSTSAKKDNNTAEQNK QDTNYESDKSSSHKKKKIKWMYDGVNIIDYCFDGELIIKTKKTKDDITEDGTNYDGINDT SGGTNSIGPNRNDNNSSQDEGDNEFSEDKNYIFKKTPFRTLSLKLPNPPIFKSTTESNII PQVSIFELLTKYDGETETFLSDKAVPSTLIISKLPKYLIFTIQRFSKNNFFTEKNGTIVN FVIKNLDMKDYVHQDYLDQNPVTKYNLVANIFHSGTVTNGSYKIHVLQQATNEWYEIEDL HVISILPQLVLLPESCIQLYQRQDVQLNGEIL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1417300.fa Sequence name : PCHAS_1417300 Sequence length : 632 VALUES OF COMPUTED PARAMETERS Coef20 : 2.450 CoefTot : -0.484 ChDiff : 7 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.224 2.041 0.334 0.606 MesoH : -0.554 0.627 -0.298 0.258 MuHd_075 : 12.739 6.230 2.019 2.064 MuHd_095 : 34.414 16.680 9.181 7.610 MuHd_100 : 28.727 10.051 8.047 6.121 MuHd_105 : 21.416 5.745 6.437 4.798 Hmax_075 : -21.175 -2.900 -7.421 -0.793 Hmax_095 : -6.737 0.000 -3.080 1.943 Hmax_100 : -10.900 -1.900 -3.795 1.580 Hmax_105 : -15.983 -4.500 -5.107 0.560 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9897 0.0103 DFMC : 0.9922 0.0078
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 632 PCHAS_1417300 MPRKPEKKIKNDDDDGVVPKRRKNEKNKNSSETETNAKNNLNKREQIDNNINDKNESYNKTTKNNENDSINNTSDNNKIR 80 VCPYLRTINRNLLDFDFEKLCSISLSNLHVYACLVCGIYFQGIGRGTYAYTHALEKNHYVFINLETCKTCCIPENYEIHD 160 ASLNDIKYFLKPVYNKEQVEHLCNNLILGKSLDGADFFPGCVGLNNLKHTDYCNVIIQLLCCIVPLRNMLLLYESKQNIA 240 KNLIVVLAELLKKIYNPKNFKGVVSPHEFLQAVGIESKKNFKIGTKNDPLNFFLWIINKIHRHSEKKLQKKKKNIPNQTN 320 KQNNLIDNNDISKNGHPKNDEGVKKSTSAKKDNNTAEQNKQDTNYESDKSSSHKKKKIKWMYDGVNIIDYCFDGELIIKT 400 KKTKDDITEDGTNYDGINDTSGGTNSIGPNRNDNNSSQDEGDNEFSEDKNYIFKKTPFRTLSLKLPNPPIFKSTTESNII 480 PQVSIFELLTKYDGETETFLSDKAVPSTLIISKLPKYLIFTIQRFSKNNFFTEKNGTIVNFVIKNLDMKDYVHQDYLDQN 560 PVTKYNLVANIFHSGTVTNGSYKIHVLQQATNEWYEIEDLHVISILPQLVLLPESCIQLYQRQDVQLNGEIL 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........................................................................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1417300 3 ----MPR|KP 0.099 . PCHAS_1417300 4 ---MPRK|PE 0.077 . PCHAS_1417300 7 MPRKPEK|KI 0.072 . PCHAS_1417300 8 PRKPEKK|IK 0.119 . PCHAS_1417300 10 KPEKKIK|ND 0.087 . PCHAS_1417300 20 DDGVVPK|RR 0.060 . PCHAS_1417300 21 DGVVPKR|RK 0.134 . PCHAS_1417300 22 GVVPKRR|KN 0.180 . PCHAS_1417300 23 VVPKRRK|NE 0.067 . PCHAS_1417300 26 KRRKNEK|NK 0.084 . PCHAS_1417300 28 RKNEKNK|NS 0.095 . PCHAS_1417300 38 ETETNAK|NN 0.060 . PCHAS_1417300 43 AKNNLNK|RE 0.062 . PCHAS_1417300 44 KNNLNKR|EQ 0.170 . PCHAS_1417300 54 DNNINDK|NE 0.065 . PCHAS_1417300 60 KNESYNK|TT 0.064 . PCHAS_1417300 63 SYNKTTK|NN 0.065 . PCHAS_1417300 78 NTSDNNK|IR 0.053 . PCHAS_1417300 80 SDNNKIR|VC 0.105 . PCHAS_1417300 86 RVCPYLR|TI 0.082 . PCHAS_1417300 90 YLRTINR|NL 0.081 . PCHAS_1417300 99 LDFDFEK|LC 0.069 . PCHAS_1417300 125 YFQGIGR|GT 0.102 . PCHAS_1417300 136 YTHALEK|NH 0.058 . PCHAS_1417300 148 INLETCK|TC 0.061 . PCHAS_1417300 167 ASLNDIK|YF 0.058 . PCHAS_1417300 171 DIKYFLK|PV 0.077 . PCHAS_1417300 176 LKPVYNK|EQ 0.058 . PCHAS_1417300 190 NNLILGK|SL 0.080 . PCHAS_1417300 208 VGLNNLK|HT 0.059 . PCHAS_1417300 227 CCIVPLR|NM 0.065 . PCHAS_1417300 236 LLLYESK|QN 0.062 . PCHAS_1417300 241 SKQNIAK|NL 0.079 . PCHAS_1417300 252 VLAELLK|KI 0.056 . PCHAS_1417300 253 LAELLKK|IY 0.087 . PCHAS_1417300 258 KKIYNPK|NF 0.066 . PCHAS_1417300 261 YNPKNFK|GV 0.064 . PCHAS_1417300 278 AVGIESK|KN 0.063 . PCHAS_1417300 279 VGIESKK|NF 0.088 . PCHAS_1417300 282 ESKKNFK|IG 0.061 . PCHAS_1417300 286 NFKIGTK|ND 0.052 . PCHAS_1417300 299 FLWIINK|IH 0.061 . PCHAS_1417300 302 IINKIHR|HS 0.136 . PCHAS_1417300 306 IHRHSEK|KL 0.077 . PCHAS_1417300 307 HRHSEKK|LQ 0.113 . PCHAS_1417300 310 SEKKLQK|KK 0.068 . PCHAS_1417300 311 EKKLQKK|KK 0.094 . PCHAS_1417300 312 KKLQKKK|KN 0.111 . PCHAS_1417300 313 KLQKKKK|NI 0.168 . PCHAS_1417300 321 IPNQTNK|QN 0.070 . PCHAS_1417300 333 DNNDISK|NG 0.065 . PCHAS_1417300 338 SKNGHPK|ND 0.092 . PCHAS_1417300 344 KNDEGVK|KS 0.059 . PCHAS_1417300 345 NDEGVKK|ST 0.232 . PCHAS_1417300 350 KKSTSAK|KD 0.074 . PCHAS_1417300 351 KSTSAKK|DN 0.169 . PCHAS_1417300 360 NTAEQNK|QD 0.067 . PCHAS_1417300 369 TNYESDK|SS 0.107 . PCHAS_1417300 374 DKSSSHK|KK 0.073 . PCHAS_1417300 375 KSSSHKK|KK 0.157 . PCHAS_1417300 376 SSSHKKK|KI 0.270 . PCHAS_1417300 377 SSHKKKK|IK 0.154 . PCHAS_1417300 379 HKKKKIK|WM 0.095 . PCHAS_1417300 399 DGELIIK|TK 0.057 . PCHAS_1417300 401 ELIIKTK|KT 0.067 . PCHAS_1417300 402 LIIKTKK|TK 0.111 . PCHAS_1417300 404 IKTKKTK|DD 0.082 . PCHAS_1417300 431 NSIGPNR|ND 0.079 . PCHAS_1417300 449 NEFSEDK|NY 0.056 . PCHAS_1417300 454 DKNYIFK|KT 0.061 . PCHAS_1417300 455 KNYIFKK|TP 0.112 . PCHAS_1417300 459 FKKTPFR|TL 0.102 . PCHAS_1417300 464 FRTLSLK|LP 0.058 . PCHAS_1417300 472 PNPPIFK|ST 0.076 . PCHAS_1417300 491 IFELLTK|YD 0.072 . PCHAS_1417300 503 ETFLSDK|AV 0.071 . PCHAS_1417300 513 STLIISK|LP 0.056 . PCHAS_1417300 516 IISKLPK|YL 0.076 . PCHAS_1417300 524 LIFTIQR|FS 0.094 . PCHAS_1417300 527 TIQRFSK|NN 0.150 . PCHAS_1417300 534 NNFFTEK|NG 0.064 . PCHAS_1417300 544 IVNFVIK|NL 0.070 . PCHAS_1417300 549 IKNLDMK|DY 0.072 . PCHAS_1417300 564 DQNPVTK|YN 0.069 . PCHAS_1417300 583 VTNGSYK|IH 0.061 . PCHAS_1417300 622 CIQLYQR|QD 0.081 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1417300 ATGCCGAGAAAACCTGAAAAAAAAATAAAAAATGATGATGATGATGGAGTAGTGCCAAAA AGAAGGAAAAATGAAAAAAATAAGAATTCATCGGAAACTGAAACTAATGCAAAAAATAAT TTAAACAAAAGAGAACAAATTGATAATAATATAAATGACAAAAACGAATCATATAATAAA ACAACCAAGAATAATGAAAACGATAGTATTAATAATACTAGTGACAATAATAAGATTAGA GTATGTCCTTATTTAAGAACAATAAATAGAAATTTACTTGATTTTGATTTTGAAAAATTA TGTAGTATTTCTTTGTCCAATTTACATGTATATGCATGTTTAGTATGTGGCATATATTTT CAAGGAATCGGAAGAGGAACCTATGCATATACTCACGCATTAGAAAAAAACCATTATGTT TTTATAAATTTAGAAACATGCAAAACTTGTTGTATTCCTGAAAATTATGAAATCCATGAT GCATCATTAAATGATATAAAATATTTTTTAAAACCTGTTTATAATAAAGAGCAAGTAGAG CATTTATGTAATAATTTAATTTTGGGAAAATCTTTAGACGGTGCTGATTTTTTCCCAGGG TGTGTTGGTTTAAATAATTTAAAGCATACAGATTATTGTAATGTAATTATACAATTATTA TGTTGTATTGTACCTTTAAGAAATATGTTATTATTATATGAAAGTAAGCAAAATATTGCA AAAAATTTAATAGTTGTTTTAGCAGAACTGTTAAAAAAAATATACAATCCAAAAAATTTT AAAGGAGTTGTATCGCCTCATGAATTTTTACAAGCAGTAGGTATTGAATCAAAAAAAAAC TTTAAAATTGGTACAAAGAATGATCCATTAAACTTTTTTTTATGGATTATTAATAAAATT CATAGACATTCAGAAAAAAAATTACAAAAAAAAAAAAAAAATATACCCAATCAAACAAAC AAGCAAAATAATCTAATAGATAATAACGATATTTCGAAAAATGGGCACCCCAAAAATGAT GAAGGTGTAAAAAAATCTACTAGCGCCAAAAAGGATAATAATACTGCAGAACAAAATAAA CAAGATACAAATTATGAATCAGATAAAAGTAGTAGCCATAAGAAAAAGAAAATAAAATGG ATGTATGATGGAGTAAATATTATTGATTATTGTTTTGATGGAGAGTTGATTATTAAAACT AAAAAAACAAAAGATGATATAACAGAGGATGGTACGAATTATGACGGGATAAATGACACT TCAGGAGGCACTAATTCCATAGGCCCTAACCGAAATGATAATAATAGTAGTCAAGATGAA GGGGATAATGAATTTAGTGAAGACAAAAACTATATATTTAAGAAAACCCCATTCCGTACT TTATCTTTAAAATTACCTAATCCTCCAATATTTAAAAGCACAACCGAAAGTAATATAATA CCTCAAGTATCTATTTTTGAGTTATTAACAAAATATGATGGAGAAACAGAAACTTTTTTA TCAGATAAAGCAGTCCCAAGTACATTAATTATTTCAAAATTACCAAAATATTTAATTTTT ACCATACAAAGATTTTCAAAAAATAATTTTTTTACAGAAAAAAATGGAACTATTGTTAAT TTTGTTATCAAAAATCTTGATATGAAAGATTATGTACATCAAGATTATCTTGACCAAAAC CCAGTAACAAAATATAATTTAGTTGCAAATATATTTCATAGTGGTACTGTTACTAATGGC TCATATAAAATACATGTTTTACAACAAGCTACAAATGAATGGTATGAAATCGAAGATCTA CATGTTATTTCGATTTTGCCACAACTTGTTTTATTACCAGAGTCATGTATTCAATTATAT CAGCGTCAAGATGTTCAGCTAAATGGAGAGATACTATAA
  • Download Fasta

  • Fasta :-

    MPRKPEKKIKNDDDDGVVPKRRKNEKNKNSSETETNAKNNLNKREQIDNNINDKNESYNK TTKNNENDSINNTSDNNKIRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACLVCGIYF QGIGRGTYAYTHALEKNHYVFINLETCKTCCIPENYEIHDASLNDIKYFLKPVYNKEQVE HLCNNLILGKSLDGADFFPGCVGLNNLKHTDYCNVIIQLLCCIVPLRNMLLLYESKQNIA KNLIVVLAELLKKIYNPKNFKGVVSPHEFLQAVGIESKKNFKIGTKNDPLNFFLWIINKI HRHSEKKLQKKKKNIPNQTNKQNNLIDNNDISKNGHPKNDEGVKKSTSAKKDNNTAEQNK QDTNYESDKSSSHKKKKIKWMYDGVNIIDYCFDGELIIKTKKTKDDITEDGTNYDGINDT SGGTNSIGPNRNDNNSSQDEGDNEFSEDKNYIFKKTPFRTLSLKLPNPPIFKSTTESNII PQVSIFELLTKYDGETETFLSDKAVPSTLIISKLPKYLIFTIQRFSKNNFFTEKNGTIVN FVIKNLDMKDYVHQDYLDQNPVTKYNLVANIFHSGTVTNGSYKIHVLQQATNEWYEIEDL HVISILPQLVLLPESCIQLYQRQDVQLNGEIL

  • title: Active Site
  • coordinates: N206,D211,S581,D599
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1417300304 SIHRHSEKKL0.997unspPCHAS_1417300304 SIHRHSEKKL0.997unspPCHAS_1417300304 SIHRHSEKKL0.997unspPCHAS_1417300372 SDKSSSHKKK0.996unspPCHAS_1417300436 SNDNNSSQDE0.99unspPCHAS_141730031 SNKNSSETET0.995unspPCHAS_1417300265 SKGVVSPHEF0.992unsp

PCHAS_141730      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India