PCHAS_1456400 | ATP-dependent zinc metalloprotease FTSH 1, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1456400OTHER0.9943910.0000480.005561
No Results

  • Fasta :-

    >PCHAS_1456400 MYNYYKNFASKIMNSNQYANGNYASSESDKHGDEVDSALLPNGDRKYMNKNKNNQYNIDN GYYGYYDKFFGKRGNKKWNYCIIFFLGVCLGFAIWPFFMTIITYKLVYKDNYNNHNFPTN DSSNSLKPYINDKNNRNDNPNNRTPPNDQSPKKPSPHFKPVRFDEIAGIDESKIELLEVV DFIKNRERYQEMGARMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEIYVGQ GAKRIRQLFSHARSVAPSIVFIDEIDAIGGKRSTSASNGAGQKEHDQTLNQLLVEMDGFS NTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDVNGRKKILEIYIKKIKSNLNAND IERMSRLTPGFSGADLENLVNEATILATRNKKSLVTINELFEARDKVSMGPERKSLKQSE HQRRITAYHEAGHAIVAYFLHPKTDPIHKATIISRGSALGYVEQIPADDRHNYFKSQMEA KLAVCMGGRTAEEIVFGKSETSSGASSDISRATDIAYKMVTEWGMSDKLGPLNYKKRMGD GYSSMRLSAQTISAIETEVKTLVEKGKSISEEILRKHRKELDNLAYALLDKETLTGEEIK KIVDPNNTRDQSNKYKLMNKDSKNNNSQNDYDSSGKKPARSDGKTNTSKNEKNEPNSHEN KYSDSRGIDTNDKDTHNNMKSDEFNDINKMEDIAEKKHIDSKDIMTLSTDSEIGVLSKHL KNGNKKLKRKYSKDPNTKNSNVLKVINSHRPPYYSKNENIDSENSINNSSDDFPNNIRNT RDSENNYDNDNTVKNTSEIFTNNFSEENNNENLSSTKTKDVNYNNFQEIVDMPPITNVSE MKKFNIYEHNLNKLFLFDIFNN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1456400.fa Sequence name : PCHAS_1456400 Sequence length : 862 VALUES OF COMPUTED PARAMETERS Coef20 : 3.548 CoefTot : -1.349 ChDiff : 8 ZoneTo : 26 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.565 2.371 0.557 0.959 MesoH : -0.558 0.294 -0.342 0.207 MuHd_075 : 29.006 17.205 8.622 6.444 MuHd_095 : 27.845 20.570 8.205 6.473 MuHd_100 : 26.935 20.481 8.672 6.578 MuHd_105 : 25.574 21.408 9.512 6.501 Hmax_075 : 5.483 3.617 -1.227 3.395 Hmax_095 : 7.875 5.950 -0.720 3.710 Hmax_100 : 6.900 5.400 -0.561 3.600 Hmax_105 : 11.550 10.267 1.665 4.573 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7024 0.2976 DFMC : 0.8359 0.1641
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 862 PCHAS_1456400 MYNYYKNFASKIMNSNQYANGNYASSESDKHGDEVDSALLPNGDRKYMNKNKNNQYNIDNGYYGYYDKFFGKRGNKKWNY 80 CIIFFLGVCLGFAIWPFFMTIITYKLVYKDNYNNHNFPTNDSSNSLKPYINDKNNRNDNPNNRTPPNDQSPKKPSPHFKP 160 VRFDEIAGIDESKIELLEVVDFIKNRERYQEMGARMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEIYVGQ 240 GAKRIRQLFSHARSVAPSIVFIDEIDAIGGKRSTSASNGAGQKEHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSA 320 LLRPGRFDRIVYVPLPDVNGRKKILEIYIKKIKSNLNANDIERMSRLTPGFSGADLENLVNEATILATRNKKSLVTINEL 400 FEARDKVSMGPERKSLKQSEHQRRITAYHEAGHAIVAYFLHPKTDPIHKATIISRGSALGYVEQIPADDRHNYFKSQMEA 480 KLAVCMGGRTAEEIVFGKSETSSGASSDISRATDIAYKMVTEWGMSDKLGPLNYKKRMGDGYSSMRLSAQTISAIETEVK 560 TLVEKGKSISEEILRKHRKELDNLAYALLDKETLTGEEIKKIVDPNNTRDQSNKYKLMNKDSKNNNSQNDYDSSGKKPAR 640 SDGKTNTSKNEKNEPNSHENKYSDSRGIDTNDKDTHNNMKSDEFNDINKMEDIAEKKHIDSKDIMTLSTDSEIGVLSKHL 720 KNGNKKLKRKYSKDPNTKNSNVLKVINSHRPPYYSKNENIDSENSINNSSDDFPNNIRNTRDSENNYDNDNTVKNTSEIF 800 TNNFSEENNNENLSSTKTKDVNYNNFQEIVDMPPITNVSEMKKFNIYEHNLNKLFLFDIFNN 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 .............................................................. 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1456400 6 -MYNYYK|NF 0.063 . PCHAS_1456400 11 YKNFASK|IM 0.066 . PCHAS_1456400 30 ASSESDK|HG 0.083 . PCHAS_1456400 45 LLPNGDR|KY 0.070 . PCHAS_1456400 46 LPNGDRK|YM 0.105 . PCHAS_1456400 50 DRKYMNK|NK 0.066 . PCHAS_1456400 52 KYMNKNK|NN 0.067 . PCHAS_1456400 68 YYGYYDK|FF 0.070 . PCHAS_1456400 72 YDKFFGK|RG 0.060 . PCHAS_1456400 73 DKFFGKR|GN 0.158 . PCHAS_1456400 76 FGKRGNK|KW 0.095 . PCHAS_1456400 77 GKRGNKK|WN 0.127 . PCHAS_1456400 105 MTIITYK|LV 0.071 . PCHAS_1456400 109 TYKLVYK|DN 0.071 . PCHAS_1456400 127 DSSNSLK|PY 0.069 . PCHAS_1456400 133 KPYINDK|NN 0.064 . PCHAS_1456400 136 INDKNNR|ND 0.102 . PCHAS_1456400 143 NDNPNNR|TP 0.072 . PCHAS_1456400 152 PNDQSPK|KP 0.067 . PCHAS_1456400 153 NDQSPKK|PS 0.093 . PCHAS_1456400 159 KPSPHFK|PV 0.145 . PCHAS_1456400 162 PHFKPVR|FD 0.128 . PCHAS_1456400 173 AGIDESK|IE 0.057 . PCHAS_1456400 184 EVVDFIK|NR 0.065 . PCHAS_1456400 186 VDFIKNR|ER 0.093 . PCHAS_1456400 188 FIKNRER|YQ 0.110 . PCHAS_1456400 195 YQEMGAR|MP 0.090 . PCHAS_1456400 198 MGARMPK|GV 0.226 . PCHAS_1456400 210 GPPGSGK|TM 0.056 . PCHAS_1456400 215 GKTMLAR|AV 0.144 . PCHAS_1456400 243 YVGQGAK|RI 0.065 . PCHAS_1456400 244 VGQGAKR|IR 0.105 . PCHAS_1456400 246 QGAKRIR|QL 0.109 . PCHAS_1456400 253 QLFSHAR|SV 0.247 . PCHAS_1456400 271 IDAIGGK|RS 0.058 . PCHAS_1456400 272 DAIGGKR|ST 0.315 . PCHAS_1456400 283 SNGAGQK|EH 0.071 . PCHAS_1456400 313 VIGATNR|ID 0.065 . PCHAS_1456400 323 LDSALLR|PG 0.076 . PCHAS_1456400 326 ALLRPGR|FD 0.201 . PCHAS_1456400 329 RPGRFDR|IV 0.496 . PCHAS_1456400 341 LPDVNGR|KK 0.082 . PCHAS_1456400 342 PDVNGRK|KI 0.071 . PCHAS_1456400 343 DVNGRKK|IL 0.118 . PCHAS_1456400 350 ILEIYIK|KI 0.062 . PCHAS_1456400 351 LEIYIKK|IK 0.081 . PCHAS_1456400 353 IYIKKIK|SN 0.075 . PCHAS_1456400 363 NANDIER|MS 0.081 . PCHAS_1456400 366 DIERMSR|LT 0.134 . PCHAS_1456400 389 ATILATR|NK 0.063 . PCHAS_1456400 391 ILATRNK|KS 0.061 . PCHAS_1456400 392 LATRNKK|SL 0.407 . PCHAS_1456400 404 NELFEAR|DK 0.092 . PCHAS_1456400 406 LFEARDK|VS 0.057 . PCHAS_1456400 413 VSMGPER|KS 0.083 . PCHAS_1456400 414 SMGPERK|SL 0.233 . PCHAS_1456400 417 PERKSLK|QS 0.080 . PCHAS_1456400 423 KQSEHQR|RI 0.126 . PCHAS_1456400 424 QSEHQRR|IT 0.204 . PCHAS_1456400 443 AYFLHPK|TD 0.060 . PCHAS_1456400 449 KTDPIHK|AT 0.070 . PCHAS_1456400 455 KATIISR|GS 0.082 . PCHAS_1456400 470 QIPADDR|HN 0.075 . PCHAS_1456400 475 DRHNYFK|SQ 0.102 . PCHAS_1456400 481 KSQMEAK|LA 0.077 . PCHAS_1456400 489 AVCMGGR|TA 0.105 . PCHAS_1456400 498 EEIVFGK|SE 0.082 . PCHAS_1456400 511 ASSDISR|AT 0.168 . PCHAS_1456400 518 ATDIAYK|MV 0.073 . PCHAS_1456400 528 EWGMSDK|LG 0.056 . PCHAS_1456400 535 LGPLNYK|KR 0.056 . PCHAS_1456400 536 GPLNYKK|RM 0.126 . PCHAS_1456400 537 PLNYKKR|MG 0.253 . PCHAS_1456400 546 DGYSSMR|LS 0.079 . PCHAS_1456400 560 AIETEVK|TL 0.062 . PCHAS_1456400 565 VKTLVEK|GK 0.071 . PCHAS_1456400 567 TLVEKGK|SI 0.139 . PCHAS_1456400 575 ISEEILR|KH 0.085 . PCHAS_1456400 576 SEEILRK|HR 0.067 . PCHAS_1456400 578 EILRKHR|KE 0.151 . PCHAS_1456400 579 ILRKHRK|EL 0.107 . PCHAS_1456400 591 AYALLDK|ET 0.064 . PCHAS_1456400 600 LTGEEIK|KI 0.064 . PCHAS_1456400 601 TGEEIKK|IV 0.136 . PCHAS_1456400 609 VDPNNTR|DQ 0.088 . PCHAS_1456400 614 TRDQSNK|YK 0.074 . PCHAS_1456400 616 DQSNKYK|LM 0.069 . PCHAS_1456400 620 KYKLMNK|DS 0.063 . PCHAS_1456400 623 LMNKDSK|NN 0.068 . PCHAS_1456400 636 DYDSSGK|KP 0.054 . PCHAS_1456400 637 YDSSGKK|PA 0.121 . PCHAS_1456400 640 SGKKPAR|SD 0.243 . PCHAS_1456400 644 PARSDGK|TN 0.061 . PCHAS_1456400 649 GKTNTSK|NE 0.060 . PCHAS_1456400 652 NTSKNEK|NE 0.059 . PCHAS_1456400 661 PNSHENK|YS 0.081 . PCHAS_1456400 666 NKYSDSR|GI 0.115 . PCHAS_1456400 673 GIDTNDK|DT 0.068 . PCHAS_1456400 680 DTHNNMK|SD 0.081 . PCHAS_1456400 689 EFNDINK|ME 0.069 . PCHAS_1456400 696 MEDIAEK|KH 0.061 . PCHAS_1456400 697 EDIAEKK|HI 0.112 . PCHAS_1456400 702 KKHIDSK|DI 0.083 . PCHAS_1456400 718 EIGVLSK|HL 0.065 . PCHAS_1456400 721 VLSKHLK|NG 0.077 . PCHAS_1456400 725 HLKNGNK|KL 0.058 . PCHAS_1456400 726 LKNGNKK|LK 0.098 . PCHAS_1456400 728 NGNKKLK|RK 0.069 . PCHAS_1456400 729 GNKKLKR|KY 0.241 . PCHAS_1456400 730 NKKLKRK|YS 0.092 . PCHAS_1456400 733 LKRKYSK|DP 0.083 . PCHAS_1456400 738 SKDPNTK|NS 0.058 . PCHAS_1456400 744 KNSNVLK|VI 0.079 . PCHAS_1456400 750 KVINSHR|PP 0.084 . PCHAS_1456400 756 RPPYYSK|NE 0.057 . PCHAS_1456400 778 DFPNNIR|NT 0.093 . PCHAS_1456400 781 NNIRNTR|DS 0.344 . PCHAS_1456400 794 DNDNTVK|NT 0.072 . PCHAS_1456400 817 ENLSSTK|TK 0.064 . PCHAS_1456400 819 LSSTKTK|DV 0.181 . PCHAS_1456400 842 TNVSEMK|KF 0.080 . PCHAS_1456400 843 NVSEMKK|FN 0.116 . PCHAS_1456400 853 YEHNLNK|LF 0.055 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1456400 ATGTATAACTATTACAAAAATTTTGCAAGTAAAATTATGAATTCTAATCAATATGCAAAT GGCAACTATGCATCTTCCGAATCAGACAAACATGGCGATGAAGTTGATTCTGCATTACTG CCAAATGGAGATAGAAAATATATGAACAAGAACAAGAATAACCAATATAATATTGACAAT GGGTATTATGGATATTATGATAAATTTTTTGGTAAACGAGGAAACAAAAAATGGAATTAT TGCATCATATTTTTTCTAGGCGTATGCCTAGGATTCGCTATATGGCCATTTTTTATGACA ATCATTACATATAAATTAGTTTATAAAGATAATTATAATAATCATAATTTTCCAACAAAT GATAGTTCGAATTCTTTAAAACCATATATAAATGATAAAAATAACAGGAATGATAATCCT AATAATAGAACACCACCAAATGATCAAAGCCCAAAAAAACCATCTCCACATTTTAAACCT GTAAGATTTGATGAAATTGCAGGAATAGATGAATCAAAAATAGAACTTTTAGAAGTCGTT GATTTTATAAAAAATAGAGAACGTTATCAAGAAATGGGTGCAAGAATGCCTAAGGGTGTA TTATTAGTTGGACCTCCAGGATCTGGTAAAACTATGCTAGCTCGAGCAGTAGCTACAGAA GCTAATGTCCCATATATATATACATCTGGGCCTGAATTTATAGAAATATATGTAGGTCAA GGAGCAAAAAGAATCAGGCAATTATTTTCCCATGCTCGATCAGTTGCACCATCAATTGTT TTTATCGATGAAATTGATGCAATCGGAGGGAAACGAAGTACTAGTGCATCTAATGGTGCA GGACAAAAAGAGCATGATCAAACATTAAATCAATTATTAGTTGAAATGGATGGATTTAGT AATACTGTACATATTATGGTCATAGGGGCAACGAATAGAATTGATACTTTAGATAGTGCT TTACTTAGGCCCGGCAGATTTGATAGAATTGTATATGTCCCATTACCAGATGTAAACGGT AGAAAAAAAATATTAGAAATTTACATAAAAAAAATTAAAAGTAACTTAAATGCGAATGAT ATTGAAAGAATGTCAAGATTGACACCTGGTTTTTCGGGCGCTGATTTAGAAAACCTTGTA AATGAAGCAACTATATTAGCTACACGAAATAAAAAAAGTTTAGTTACTATAAATGAATTA TTTGAAGCACGAGATAAAGTTTCAATGGGGCCTGAAAGAAAATCGTTAAAGCAATCAGAA CATCAAAGACGAATAACTGCTTATCATGAAGCTGGACATGCAATAGTTGCATATTTTCTT CACCCCAAAACAGACCCTATACATAAAGCTACTATTATTTCTAGAGGCAGTGCTTTAGGG TATGTAGAGCAAATACCTGCTGATGATAGACATAATTACTTTAAAAGCCAAATGGAAGCA AAATTAGCAGTATGTATGGGTGGAAGAACAGCAGAAGAAATTGTTTTCGGAAAATCTGAA ACAAGTAGTGGAGCATCTAGTGATATTTCAAGAGCTACTGATATAGCTTATAAAATGGTA ACCGAATGGGGAATGTCAGATAAATTAGGTCCATTAAATTATAAAAAAAGAATGGGTGAT GGGTATTCTTCTATGAGATTATCAGCTCAAACCATATCAGCTATAGAAACGGAAGTTAAA ACATTAGTAGAAAAGGGAAAAAGCATATCCGAAGAAATTTTAAGAAAACATAGAAAAGAA TTAGACAATTTAGCCTATGCATTATTAGATAAAGAAACATTAACTGGAGAAGAAATTAAA AAAATAGTTGATCCAAATAATACAAGGGACCAATCAAATAAATATAAACTCATGAATAAA GATTCTAAGAATAACAATTCACAAAATGATTACGATAGTAGTGGAAAAAAACCTGCACGA AGTGATGGAAAAACAAACACATCAAAAAACGAAAAGAATGAACCAAATTCTCATGAAAAT AAATATAGCGATTCTAGAGGAATAGATACCAATGACAAAGATACCCACAATAATATGAAA TCTGATGAATTTAATGATATTAATAAAATGGAAGATATTGCCGAAAAGAAACACATAGAT TCTAAAGATATAATGACTCTTTCGACTGATAGTGAAATTGGAGTTTTAAGTAAACATTTA AAAAATGGAAACAAAAAACTTAAGAGAAAATATTCGAAGGATCCAAACACCAAGAATAGC AATGTACTAAAAGTGATAAATAGTCACAGACCGCCATATTATTCTAAAAATGAAAATATT GACTCAGAAAATAGTATTAATAATTCATCGGATGATTTTCCTAACAATATTAGAAATACT AGAGACAGTGAAAACAACTATGATAATGATAACACTGTAAAAAATACTAGTGAAATTTTT ACAAACAATTTTTCTGAAGAAAATAATAATGAGAATTTGAGCTCTACCAAAACAAAGGAT GTAAATTATAATAATTTTCAGGAAATAGTAGATATGCCACCTATCACAAATGTTTCTGAA ATGAAAAAGTTCAATATTTATGAGCATAATTTGAATAAATTATTTTTATTTGACATTTTT AATAATTAA
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  • Fasta :-

    MYNYYKNFASKIMNSNQYANGNYASSESDKHGDEVDSALLPNGDRKYMNKNKNNQYNIDN GYYGYYDKFFGKRGNKKWNYCIIFFLGVCLGFAIWPFFMTIITYKLVYKDNYNNHNFPTN DSSNSLKPYINDKNNRNDNPNNRTPPNDQSPKKPSPHFKPVRFDEIAGIDESKIELLEVV DFIKNRERYQEMGARMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEIYVGQ GAKRIRQLFSHARSVAPSIVFIDEIDAIGGKRSTSASNGAGQKEHDQTLNQLLVEMDGFS NTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDVNGRKKILEIYIKKIKSNLNAND IERMSRLTPGFSGADLENLVNEATILATRNKKSLVTINELFEARDKVSMGPERKSLKQSE HQRRITAYHEAGHAIVAYFLHPKTDPIHKATIISRGSALGYVEQIPADDRHNYFKSQMEA KLAVCMGGRTAEEIVFGKSETSSGASSDISRATDIAYKMVTEWGMSDKLGPLNYKKRMGD GYSSMRLSAQTISAIETEVKTLVEKGKSISEEILRKHRKELDNLAYALLDKETLTGEEIK KIVDPNNTRDQSNKYKLMNKDSKNNNSQNDYDSSGKKPARSDGKTNTSKNEKNEPNSHEN KYSDSRGIDTNDKDTHNNMKSDEFNDINKMEDIAEKKHIDSKDIMTLSTDSEIGVLSKHL KNGNKKLKRKYSKDPNTKNSNVLKVINSHRPPYYSKNENIDSENSINNSSDDFPNNIRNT RDSENNYDNDNTVKNTSEIFTNNFSEENNNENLSSTKTKDVNYNNFQEIVDMPPITNVSE MKKFNIYEHNLNKLFLFDIFNN

  • title: ATP binding site
  • coordinates: P205,P206,G207,S208,G209,K210,T211,M212,D263,N312
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1456400415 SPERKSLKQS0.997unspPCHAS_1456400415 SPERKSLKQS0.997unspPCHAS_1456400415 SPERKSLKQS0.997unspPCHAS_1456400568 SEKGKSISEE0.99unspPCHAS_1456400657 SNEPNSHENK0.995unspPCHAS_1456400783 SNTRDSENNY0.997unspPCHAS_145640028 SASSESDKHG0.993unspPCHAS_1456400275 SKRSTSASNG0.995unsp

PCHAS_145640      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India