PF3D7_0102400 | lysophospholipase, putative, pseudogene

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_IDPredictionOTHERSPmTPCS_Position
PF3D7_0102400OTHER0.9999800.0000160.000004
No Results

  • Fasta :-

    >PF3D7_0102400 MDKNNLIPKGSNYNENVEVISRVDTFNNKYGLSIKNYSWIVKEVIAIIILVHGLGSSLRF GFLRHSVNIVDNMHATLIDSDNFYIYKNSWIEEFNKNGYSVYGIDLQGHGESDGIANLRL HINDFDDFSDDVIDHIKKIHHSIMFENDKKGNLYNNNNNNNNNNNNKMESMEKIPMYLIG YSMGGNIVLRTLEILGK*KDRISKYNIKGIICISAMVSVQLVGFTDSFKYRYFYLPATWL LATLFPTYRQKTGSVEFKKFPYVNDIISLDSGRFKGDKTNKFTYGIVKSLDTLHKYIDDI PRNIPILFIHSRNDSLCYYPGLEIFYNRLVSDNKELVTLENNEHLVIMEPGNEQILQKIL DWIFNIYKKEDERNNVKEEITLK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0102400.fa Sequence name : PF3D7_0102400 Sequence length : 383 VALUES OF COMPUTED PARAMETERS Coef20 : 2.967 CoefTot : 0.000 ChDiff : -2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.818 1.900 0.384 0.721 MesoH : -0.288 0.494 -0.291 0.259 MuHd_075 : 20.295 15.980 6.338 4.262 MuHd_095 : 2.949 8.751 1.984 2.125 MuHd_100 : 10.180 13.128 4.669 3.184 MuHd_105 : 24.618 17.627 7.796 4.793 Hmax_075 : -5.512 2.712 -3.454 1.400 Hmax_095 : -11.987 -2.012 -5.279 0.350 Hmax_100 : -4.800 3.400 -2.895 2.060 Hmax_105 : 0.000 8.050 -1.058 3.313 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9794 0.0206 DFMC : 0.9786 0.0214
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 383 PF3D7_0102400 MDKNNLIPKGSNYNENVEVISRVDTFNNKYGLSIKNYSWIVKEVIAIIILVHGLGSSLRFGFLRHSVNIVDNMHATLIDS 80 DNFYIYKNSWIEEFNKNGYSVYGIDLQGHGESDGIANLRLHINDFDDFSDDVIDHIKKIHHSIMFENDKKGNLYNNNNNN 160 NNNNNNKMESMEKIPMYLIGYSMGGNIVLRTLEILGKXKDRISKYNIKGIICISAMVSVQLVGFTDSFKYRYFYLPATWL 240 LATLFPTYRQKTGSVEFKKFPYVNDIISLDSGRFKGDKTNKFTYGIVKSLDTLHKYIDDIPRNIPILFIHSRNDSLCYYP 320 GLEIFYNRLVSDNKELVTLENNEHLVIMEPGNEQILQKILDWIFNIYKKEDERNNVKEEITLK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0102400 3 ----MDK|NN 0.055 . PF3D7_0102400 9 KNNLIPK|GS 0.079 . PF3D7_0102400 22 NVEVISR|VD 0.064 . PF3D7_0102400 29 VDTFNNK|YG 0.057 . PF3D7_0102400 35 KYGLSIK|NY 0.070 . PF3D7_0102400 42 NYSWIVK|EV 0.092 . PF3D7_0102400 59 GLGSSLR|FG 0.076 . PF3D7_0102400 64 LRFGFLR|HS 0.109 . PF3D7_0102400 87 DNFYIYK|NS 0.066 . PF3D7_0102400 96 WIEEFNK|NG 0.059 . PF3D7_0102400 119 DGIANLR|LH 0.076 . PF3D7_0102400 137 DVIDHIK|KI 0.069 . PF3D7_0102400 138 VIDHIKK|IH 0.082 . PF3D7_0102400 149 IMFENDK|KG 0.055 . PF3D7_0102400 150 MFENDKK|GN 0.080 . PF3D7_0102400 167 NNNNNNK|ME 0.069 . PF3D7_0102400 173 KMESMEK|IP 0.056 . PF3D7_0102400 190 GGNIVLR|TL 0.112 . PF3D7_0102400 197 TLEILGK|XK 0.067 . PF3D7_0102400 199 EILGKXK|DR 0.065 . PF3D7_0102400 201 LGKXKDR|IS 0.107 . PF3D7_0102400 204 XKDRISK|YN 0.165 . PF3D7_0102400 208 ISKYNIK|GI 0.072 . PF3D7_0102400 229 GFTDSFK|YR 0.062 . PF3D7_0102400 231 TDSFKYR|YF 0.135 . PF3D7_0102400 249 TLFPTYR|QK 0.090 . PF3D7_0102400 251 FPTYRQK|TG 0.066 . PF3D7_0102400 258 TGSVEFK|KF 0.079 . PF3D7_0102400 259 GSVEFKK|FP 0.104 . PF3D7_0102400 273 ISLDSGR|FK 0.133 . PF3D7_0102400 275 LDSGRFK|GD 0.077 . PF3D7_0102400 278 GRFKGDK|TN 0.059 . PF3D7_0102400 281 KGDKTNK|FT 0.080 . PF3D7_0102400 288 FTYGIVK|SL 0.079 . PF3D7_0102400 295 SLDTLHK|YI 0.089 . PF3D7_0102400 302 YIDDIPR|NI 0.084 . PF3D7_0102400 312 ILFIHSR|ND 0.083 . PF3D7_0102400 328 LEIFYNR|LV 0.133 . PF3D7_0102400 334 RLVSDNK|EL 0.062 . PF3D7_0102400 358 NEQILQK|IL 0.080 . PF3D7_0102400 368 WIFNIYK|KE 0.056 . PF3D7_0102400 369 IFNIYKK|ED 0.093 . PF3D7_0102400 373 YKKEDER|NN 0.086 . PF3D7_0102400 377 DERNNVK|EE 0.057 . PF3D7_0102400 383 KEEITLK|-- 0.062 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0102400 ATGGATAAAAATAATTTGATACCCAAAGGTAGTAATTATAATGAGAATGTGGAGGTAATA TCTCGAGTGGATACATTTAATAATAAATATGGATTATCTATAAAAAATTATTCATGGATA GTTAAAGAGGTGATTGCTATTATAATATTAGTACATGGTTTAGGTTCAAGTTTACGTTTT GGTTTTTTGAGACATAGCGTAAATATAGTAGATAATATGCATGCTACATTAATTGATAGT GATAATTTTTATATTTATAAAAATAGTTGGATTGAAGAATTTAATAAGAATGGTTATTCT GTATATGGAATAGATTTACAAGGTCATGGAGAATCTGATGGGATAGCTAATTTAAGACTT CATATAAATGATTTTGATGATTTTTCTGATGATGTTATAGATCATATTAAAAAAATACAT CATTCGATTATGTTCGAAAATGATAAGAAAGGTAATTTATATAATAATAATAATAATAAT AATAATAATAATAATAATAAAATGGAAAGTATGGAAAAAATTCCTATGTATTTAATTGGT TATTCTATGGGAGGAAATATAGTTTTAAGAACTTTAGAAATATTAGGAAAATAAAAAGAT CGAATTTCAAAATATAATATTAAAGGAATTATATGTATTTCTGCTATGGTTTCAGTACAA TTAGTAGGGTTTACAGATTCTTTTAAATATCGATACTTTTATTTACCAGCAACATGGTTG CTTGCTACCTTATTTCCAACATATAGACAAAAAACAGGAAGTGTTGAATTTAAGAAATTT CCATATGTTAATGATATTATATCATTAGATAGTGGTAGATTTAAGGGTGATAAAACAAAT AAATTTACATATGGAATTGTTAAATCTTTAGATACTTTACATAAATATATAGATGATATT CCTAGAAATATACCTATACTGTTTATCCATTCAAGAAATGATAGTCTTTGTTATTATCCC GGCTTAGAAATATTTTATAATAGATTAGTCAGTGATAATAAAGAATTAGTGACCTTAGAA AATAACGAACATCTTGTTATTATGGAACCAGGAAATGAACAAATTCTACAAAAAATTCTT GATTGGATTTTTAACATTTATAAAAAAGAAGATGAACGTAATAATGTAAAAGAGGAAATC ACCCTGAAGTGA
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  • Fasta :-

    MDKNNLIPKGSNYNENVEVISRVDTFNNKYGLSIKNYSWIVKEVIAIIILVHGLGSSLRF GFLRHSVNIVDNMHATLIDSDNFYIYKNSWIEEFNKNGYSVYGIDLQGHGESDGIANLRL HINDFDDFSDDVIDHIKKIHHSIMFENDKKGNLYNNNNNNNNNNNNKMESMEKIPMYLIG YSMGGNIVLRTLEILGK*KDRISKYNIKGIICISAMVSVQLVGFTDSFKYRYFYLPATWL LATLFPTYRQKTGSVEFKKFPYVNDIISLDSGRFKGDKTNKFTYGIVKSLDTLHKYIDDI PRNIPILFIHSRNDSLCYYPGLEIFYNRLVSDNKELVTLENNEHLVIMEPGNEQILQKIL DWIFNIYKKEDERNNVKEEITLK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_0102400203 SKDRISKYNI0.995unspPF3D7_0102400254 SQKTGSVEFK0.992unsp

MAL1P1.15      PFA0120c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India