PF3D7_0108000 | proteasome subunit beta type-3, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0108000OTHER0.9829710.0116620.005368
No Results

  • Fasta :-

    >PF3D7_0108000 MGSIYNYNGGCVLGMSGSNCVAIACDLRLGANTFTTVSTKFSKIFKMNNNVYVGLSGLAT DIQTLYEILRYRVNLYEVRQDAEMDVECFANMLSSILYSNRFSPYFVNPIVVGFKLKHYV DEEGEKKVNYEPYLTAYDLIGAKCETRDFVVNGVTSEQLFGMCESLYVKDQDENGLFETI SQCLLSALDRDCISGWGAEVLVLTPEKIIKKKLKARMD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0108000.fa Sequence name : PF3D7_0108000 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 3.261 CoefTot : -2.005 ChDiff : -5 ZoneTo : 60 KR : 4 DE : 1 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.418 0.443 0.484 MesoH : -0.335 0.342 -0.267 0.198 MuHd_075 : 17.526 10.624 6.574 4.726 MuHd_095 : 40.618 24.441 10.714 9.756 MuHd_100 : 35.234 24.545 10.127 9.281 MuHd_105 : 33.651 26.984 10.212 8.948 Hmax_075 : 9.333 10.200 6.467 3.838 Hmax_095 : 19.075 17.325 3.214 6.676 Hmax_100 : 19.000 17.000 3.050 6.530 Hmax_105 : 19.133 16.500 3.121 6.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8350 0.1650 DFMC : 0.8147 0.1853
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 PF3D7_0108000 MGSIYNYNGGCVLGMSGSNCVAIACDLRLGANTFTTVSTKFSKIFKMNNNVYVGLSGLATDIQTLYEILRYRVNLYEVRQ 80 DAEMDVECFANMLSSILYSNRFSPYFVNPIVVGFKLKHYVDEEGEKKVNYEPYLTAYDLIGAKCETRDFVVNGVTSEQLF 160 GMCESLYVKDQDENGLFETISQCLLSALDRDCISGWGAEVLVLTPEKIIKKKLKARMD 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0108000 28 AIACDLR|LG 0.070 . PF3D7_0108000 40 FTTVSTK|FS 0.061 . PF3D7_0108000 43 VSTKFSK|IF 0.061 . PF3D7_0108000 46 KFSKIFK|MN 0.075 . PF3D7_0108000 70 TLYEILR|YR 0.072 . PF3D7_0108000 72 YEILRYR|VN 0.073 . PF3D7_0108000 79 VNLYEVR|QD 0.070 . PF3D7_0108000 101 SILYSNR|FS 0.080 . PF3D7_0108000 115 PIVVGFK|LK 0.060 . PF3D7_0108000 117 VVGFKLK|HY 0.074 . PF3D7_0108000 126 VDEEGEK|KV 0.062 . PF3D7_0108000 127 DEEGEKK|VN 0.070 . PF3D7_0108000 143 YDLIGAK|CE 0.053 . PF3D7_0108000 147 GAKCETR|DF 0.106 . PF3D7_0108000 169 CESLYVK|DQ 0.072 . PF3D7_0108000 190 LLSALDR|DC 0.131 . PF3D7_0108000 207 LVLTPEK|II 0.064 . PF3D7_0108000 210 TPEKIIK|KK 0.071 . PF3D7_0108000 211 PEKIIKK|KL 0.087 . PF3D7_0108000 212 EKIIKKK|LK 0.095 . PF3D7_0108000 214 IIKKKLK|AR 0.081 . PF3D7_0108000 216 KKKLKAR|MD 0.125 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0108000 ATGGGGTCTATATATAATTATAATGGTGGTTGCGTTTTAGGAATGAGTGGATCAAATTGT GTCGCGATAGCATGTGATTTGAGATTAGGAGCAAATACATTTACAACCGTTAGTACAAAA TTTAGTAAGATTTTCAAGATGAATAATAATGTATATGTAGGATTAAGTGGATTAGCTACT GATATACAAACGTTATATGAAATATTAAGATATCGTGTTAATTTATATGAAGTTAGGCAA GATGCAGAAATGGATGTTGAATGTTTTGCAAATATGTTATCGAGCATACTATATTCTAAT AGATTCTCTCCTTATTTTGTTAATCCTATAGTTGTTGGATTTAAACTTAAACATTATGTA GATGAAGAAGGAGAAAAGAAAGTTAATTATGAACCTTATCTCACGGCATATGATTTAATT GGAGCCAAATGTGAAACTAGAGATTTTGTTGTGAACGGGGTAACATCTGAACAGCTTTTT GGAATGTGTGAATCGTTATATGTCAAGGATCAGGATGAAAATGGACTTTTTGAAACTATT TCCCAGTGTTTGTTAAGTGCTTTGGATAGAGATTGTATCTCCGGATGGGGAGCCGAAGTT TTAGTTTTAACCCCTGAAAAAATTATAAAGAAAAAGCTTAAAGCAAGAATGGATTAA
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  • Fasta :-

    MGSIYNYNGGCVLGMSGSNCVAIACDLRLGANTFTTVSTKFSKIFKMNNNVYVGLSGLAT DIQTLYEILRYRVNLYEVRQDAEMDVECFANMLSSILYSNRFSPYFVNPIVVGFKLKHYV DEEGEKKVNYEPYLTAYDLIGAKCETRDFVVNGVTSEQLFGMCESLYVKDQDENGLFETI SQCLLSALDRDCISGWGAEVLVLTPEKIIKKKLKARMD

  • title: active site
  • coordinates: G10,D26,R28,K43,V154,D191,S194,G195
No Results
No Results
No Results

MAL1P2.08      PFA0400c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India