PF3D7_0207300 | serine repeat antigen 8

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0207300OTHER0.6951510.0513550.253494
No Results

  • Fasta :-

    >PF3D7_0207300 MFSLCTVHSNMLINCFGVLHCNICRTVLRNCFLSGTSDLQKCISCGEKYYKISPCTQNHE SFLMSKIDMNNTFVELKDHEEVTDEKMKNLITKIIEIAIDRHTLGLHDFSSVSDEYKEKI KMLCMFSNYKDNYENANNHRQAKVEIVEEHIHKIVESYINEENNMEHMKDLLKNPALCLK NPNQWVKDRAGFKDDDKPSVGIIPERKIFKPYDIKTLKSSLYASSTNCDRQFCDRFSDSN ECEHRIRVLNQGKCGNCWVFASSVVIAAYRCRKGLGFAEPSIKYVTLCKNKHLMDIDNNP FGHYNDNICKEGGHLSYYLETLEKTRMLPTSHDVPYNEPITGSECPDNKETWSNIWKGVN LMDRIYAGYIYHGYFKVSFKDYVVSNRTNDLINIIKDYIIQQGSVFVSMEVTDKLTFDHD GTKVMMSCEDNDSPDHALVLIGYGDYIKTNGKKSSYWLLRNSWGSHWGDKGNFKLDMYGP NNCNGKVLYNAFPLLLNMAHNPIDVPLPNDLASTDIRVRYRQSDFNQNRNRNNYPQYDKN SNDNDRNYINPYNKNDNNYNPYNKPHYNDKENDAYYEKNDDYNNAHIRRNTIRFKKRIIK YSLYARIGNTVYKRTIFSKRKDEYKEPYSCLRTFSFEKDSDTKCRSNCEKYIDKCKHNSS IGECLIQHSPNYKCVYCGM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0207300.fa Sequence name : PF3D7_0207300 Sequence length : 679 VALUES OF COMPUTED PARAMETERS Coef20 : 4.231 CoefTot : -0.186 ChDiff : 6 ZoneTo : 37 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.194 1.371 0.133 0.455 MesoH : -0.676 0.115 -0.340 0.129 MuHd_075 : 35.369 29.665 8.949 10.236 MuHd_095 : 39.117 25.350 10.510 9.735 MuHd_100 : 36.382 21.237 8.788 9.316 MuHd_105 : 24.792 13.800 8.825 6.341 Hmax_075 : 20.400 18.667 5.794 8.100 Hmax_095 : 18.200 20.900 5.225 6.291 Hmax_100 : 18.200 20.900 4.733 6.900 Hmax_105 : 13.700 17.033 7.096 6.043 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1999 0.8001 DFMC : 0.3285 0.6715 This protein is probably imported in mitochondria. f(Ser) = 0.1081 f(Arg) = 0.0541 CMi = 0.74212 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 679 PF3D7_0207300 MFSLCTVHSNMLINCFGVLHCNICRTVLRNCFLSGTSDLQKCISCGEKYYKISPCTQNHESFLMSKIDMNNTFVELKDHE 80 EVTDEKMKNLITKIIEIAIDRHTLGLHDFSSVSDEYKEKIKMLCMFSNYKDNYENANNHRQAKVEIVEEHIHKIVESYIN 160 EENNMEHMKDLLKNPALCLKNPNQWVKDRAGFKDDDKPSVGIIPERKIFKPYDIKTLKSSLYASSTNCDRQFCDRFSDSN 240 ECEHRIRVLNQGKCGNCWVFASSVVIAAYRCRKGLGFAEPSIKYVTLCKNKHLMDIDNNPFGHYNDNICKEGGHLSYYLE 320 TLEKTRMLPTSHDVPYNEPITGSECPDNKETWSNIWKGVNLMDRIYAGYIYHGYFKVSFKDYVVSNRTNDLINIIKDYII 400 QQGSVFVSMEVTDKLTFDHDGTKVMMSCEDNDSPDHALVLIGYGDYIKTNGKKSSYWLLRNSWGSHWGDKGNFKLDMYGP 480 NNCNGKVLYNAFPLLLNMAHNPIDVPLPNDLASTDIRVRYRQSDFNQNRNRNNYPQYDKNSNDNDRNYINPYNKNDNNYN 560 PYNKPHYNDKENDAYYEKNDDYNNAHIRRNTIRFKKRIIKYSLYARIGNTVYKRTIFSKRKDEYKEPYSCLRTFSFEKDS 640 DTKCRSNCEKYIDKCKHNSSIGECLIQHSPNYKCVYCGM 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ....................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0207300 25 LHCNICR|TV 0.084 . PF3D7_0207300 29 ICRTVLR|NC 0.089 . PF3D7_0207300 41 GTSDLQK|CI 0.095 . PF3D7_0207300 48 CISCGEK|YY 0.071 . PF3D7_0207300 51 CGEKYYK|IS 0.063 . PF3D7_0207300 66 ESFLMSK|ID 0.059 . PF3D7_0207300 77 NTFVELK|DH 0.072 . PF3D7_0207300 86 EEVTDEK|MK 0.057 . PF3D7_0207300 88 VTDEKMK|NL 0.068 . PF3D7_0207300 93 MKNLITK|II 0.105 . PF3D7_0207300 101 IEIAIDR|HT 0.073 . PF3D7_0207300 117 SVSDEYK|EK 0.083 . PF3D7_0207300 119 SDEYKEK|IK 0.065 . PF3D7_0207300 121 EYKEKIK|ML 0.062 . PF3D7_0207300 130 CMFSNYK|DN 0.064 . PF3D7_0207300 140 ENANNHR|QA 0.121 . PF3D7_0207300 143 NNHRQAK|VE 0.207 . PF3D7_0207300 153 VEEHIHK|IV 0.082 . PF3D7_0207300 169 NNMEHMK|DL 0.080 . PF3D7_0207300 173 HMKDLLK|NP 0.055 . PF3D7_0207300 180 NPALCLK|NP 0.062 . PF3D7_0207300 187 NPNQWVK|DR 0.073 . PF3D7_0207300 189 NQWVKDR|AG 0.095 . PF3D7_0207300 193 KDRAGFK|DD 0.070 . PF3D7_0207300 197 GFKDDDK|PS 0.060 . PF3D7_0207300 206 VGIIPER|KI 0.087 . PF3D7_0207300 207 GIIPERK|IF 0.074 . PF3D7_0207300 210 PERKIFK|PY 0.069 . PF3D7_0207300 215 FKPYDIK|TL 0.059 . PF3D7_0207300 218 YDIKTLK|SS 0.067 . PF3D7_0207300 230 SSTNCDR|QF 0.087 . PF3D7_0207300 235 DRQFCDR|FS 0.130 . PF3D7_0207300 245 SNECEHR|IR 0.072 . PF3D7_0207300 247 ECEHRIR|VL 0.093 . PF3D7_0207300 253 RVLNQGK|CG 0.058 . PF3D7_0207300 270 VVIAAYR|CR 0.075 . PF3D7_0207300 272 IAAYRCR|KG 0.072 . PF3D7_0207300 273 AAYRCRK|GL 0.383 . PF3D7_0207300 283 FAEPSIK|YV 0.071 . PF3D7_0207300 289 KYVTLCK|NK 0.054 . PF3D7_0207300 291 VTLCKNK|HL 0.067 . PF3D7_0207300 310 YNDNICK|EG 0.059 . PF3D7_0207300 324 YLETLEK|TR 0.051 . PF3D7_0207300 326 ETLEKTR|ML 0.083 . PF3D7_0207300 349 SECPDNK|ET 0.061 . PF3D7_0207300 357 TWSNIWK|GV 0.090 . PF3D7_0207300 364 GVNLMDR|IY 0.097 . PF3D7_0207300 376 IYHGYFK|VS 0.059 . PF3D7_0207300 380 YFKVSFK|DY 0.075 . PF3D7_0207300 387 DYVVSNR|TN 0.079 . PF3D7_0207300 396 DLINIIK|DY 0.075 . PF3D7_0207300 414 SMEVTDK|LT 0.070 . PF3D7_0207300 423 FDHDGTK|VM 0.060 . PF3D7_0207300 448 GYGDYIK|TN 0.061 . PF3D7_0207300 452 YIKTNGK|KS 0.058 . PF3D7_0207300 453 IKTNGKK|SS 0.139 . PF3D7_0207300 460 SSYWLLR|NS 0.100 . PF3D7_0207300 470 GSHWGDK|GN 0.073 . PF3D7_0207300 474 GDKGNFK|LD 0.063 . PF3D7_0207300 486 PNNCNGK|VL 0.071 . PF3D7_0207300 517 LASTDIR|VR 0.080 . PF3D7_0207300 519 STDIRVR|YR 0.076 . PF3D7_0207300 521 DIRVRYR|QS 0.109 . PF3D7_0207300 529 SDFNQNR|NR 0.083 . PF3D7_0207300 531 FNQNRNR|NN 0.098 . PF3D7_0207300 539 NYPQYDK|NS 0.057 . PF3D7_0207300 546 NSNDNDR|NY 0.080 . PF3D7_0207300 554 YINPYNK|ND 0.060 . PF3D7_0207300 564 NYNPYNK|PH 0.057 . PF3D7_0207300 570 KPHYNDK|EN 0.077 . PF3D7_0207300 578 NDAYYEK|ND 0.060 . PF3D7_0207300 588 YNNAHIR|RN 0.089 . PF3D7_0207300 589 NNAHIRR|NT 0.143 . PF3D7_0207300 593 IRRNTIR|FK 0.157 . PF3D7_0207300 595 RNTIRFK|KR 0.059 . PF3D7_0207300 596 NTIRFKK|RI 0.257 . PF3D7_0207300 597 TIRFKKR|II 0.316 . PF3D7_0207300 600 FKKRIIK|YS 0.124 . PF3D7_0207300 606 KYSLYAR|IG 0.095 . PF3D7_0207300 613 IGNTVYK|RT 0.066 . PF3D7_0207300 614 GNTVYKR|TI 0.213 . PF3D7_0207300 619 KRTIFSK|RK 0.066 . PF3D7_0207300 620 RTIFSKR|KD 0.263 . PF3D7_0207300 621 TIFSKRK|DE 0.102 . PF3D7_0207300 625 KRKDEYK|EP 0.076 . PF3D7_0207300 632 EPYSCLR|TF 0.086 . PF3D7_0207300 638 RTFSFEK|DS 0.074 . PF3D7_0207300 643 EKDSDTK|CR 0.063 . PF3D7_0207300 645 DSDTKCR|SN 0.161 . PF3D7_0207300 650 CRSNCEK|YI 0.117 . PF3D7_0207300 654 CEKYIDK|CK 0.060 . PF3D7_0207300 656 KYIDKCK|HN 0.077 . PF3D7_0207300 673 QHSPNYK|CV 0.096 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0207300 ATGTTTTCCCTGTGTACAGTACATTCAAATATGTTAATTAATTGCTTTGGAGTTCTACAT TGTAATATATGCCGCACAGTATTAAGAAATTGCTTTTTGTCTGGGACATCTGATTTACAA AAATGTATTTCATGTGGAGAGAAGTATTACAAAATTAGTCCTTGTACACAAAACCATGAA AGCTTTTTGATGTCCAAAATAGATATGAATAACACATTTGTGGAGTTAAAGGATCACGAA GAAGTAACCGATGAGAAGATGAAAAATTTGATAACAAAAATAATAGAAATTGCCATAGAC AGGCATACGTTGGGTTTACACGATTTTAGTAGTGTTAGCGATGAATATAAAGAGAAAATA AAAATGTTATGTATGTTTTCTAACTATAAAGATAACTATGAAAATGCTAACAACCACAGA CAAGCAAAAGTAGAAATCGTCGAAGAACATATACATAAAATTGTAGAATCATATATAAAT GAAGAAAATAATATGGAACATATGAAAGATTTATTAAAGAATCCAGCTTTATGTTTAAAA AATCCTAATCAATGGGTTAAAGATAGAGCAGGTTTTAAAGATGATGATAAACCTTCTGTT GGTATAATACCTGAGAGGAAAATATTCAAACCTTATGATATTAAGACTTTAAAAAGTTCT TTATATGCCTCTAGCACAAATTGTGACAGGCAATTTTGTGATCGTTTTTCTGATTCAAAT GAATGTGAGCATAGAATTAGGGTTCTCAATCAAGGAAAATGTGGGAATTGTTGGGTTTTT GCTTCGAGTGTTGTTATAGCAGCTTACAGATGCCGAAAAGGGTTAGGATTTGCTGAACCC TCAATAAAATATGTAACATTATGTAAAAATAAACACTTAATGGATATCGACAATAATCCC TTTGGTCATTATAATGATAACATATGTAAAGAGGGTGGTCATCTTTCGTACTATTTAGAA ACCTTGGAAAAGACTAGAATGTTACCTACATCTCATGATGTACCTTATAATGAGCCTATA ACAGGATCGGAATGTCCTGATAATAAGGAGACATGGAGTAATATATGGAAAGGTGTAAAT TTGATGGATAGGATATATGCAGGATATATATATCATGGGTATTTTAAGGTATCCTTTAAG GATTATGTAGTTAGTAATAGAACCAATGATTTAATAAATATAATAAAAGATTATATTATT CAACAAGGATCTGTATTTGTTTCTATGGAAGTAACAGATAAATTAACATTTGATCATGAT GGGACAAAAGTTATGATGAGTTGTGAAGATAATGATAGTCCGGATCATGCCTTAGTATTA ATAGGATATGGTGATTATATAAAAACGAATGGAAAAAAAAGTTCTTATTGGTTATTAAGA AATAGTTGGGGATCACATTGGGGTGATAAGGGGAATTTTAAATTAGATATGTATGGTCCC AATAATTGTAATGGTAAAGTATTATATAATGCCTTTCCTTTACTTTTAAATATGGCACAT AATCCAATAGATGTCCCATTACCTAATGATTTAGCATCTACAGATATTAGAGTTAGATAT AGACAATCGGATTTTAATCAAAATAGAAATAGAAATAATTATCCACAATATGATAAAAAC AGTAATGATAATGATCGAAATTATATTAATCCATATAATAAGAATGATAATAATTATAAT CCTTATAATAAACCTCATTATAATGATAAGGAAAATGATGCTTATTATGAAAAAAATGAT GATTATAATAATGCACATATTAGGAGAAATACAATTCGTTTCAAGAAAAGAATTATCAAG TATTCTTTATATGCAAGAATTGGAAACACTGTATATAAGAGGACTATATTTAGCAAAAGA AAAGATGAATACAAGGAACCATATTCGTGTCTCAGAACATTTTCTTTTGAAAAAGATTCA GATACTAAGTGCCGTAGTAATTGTGAGAAGTACATTGATAAATGTAAACATAATTCTTCT ATAGGAGAATGCTTAATACAACATTCTCCAAATTATAAATGTGTATATTGTGGAATGTAA
  • Download Fasta

  • Fasta :-

    MFSLCTVHSNMLINCFGVLHCNICRTVLRNCFLSGTSDLQKCISCGEKYYKISPCTQNHE SFLMSKIDMNNTFVELKDHEEVTDEKMKNLITKIIEIAIDRHTLGLHDFSSVSDEYKEKI KMLCMFSNYKDNYENANNHRQAKVEIVEEHIHKIVESYINEENNMEHMKDLLKNPALCLK NPNQWVKDRAGFKDDDKPSVGIIPERKIFKPYDIKTLKSSLYASSTNCDRQFCDRFSDSN ECEHRIRVLNQGKCGNCWVFASSVVIAAYRCRKGLGFAEPSIKYVTLCKNKHLMDIDNNP FGHYNDNICKEGGHLSYYLETLEKTRMLPTSHDVPYNEPITGSECPDNKETWSNIWKGVN LMDRIYAGYIYHGYFKVSFKDYVVSNRTNDLINIIKDYIIQQGSVFVSMEVTDKLTFDHD GTKVMMSCEDNDSPDHALVLIGYGDYIKTNGKKSSYWLLRNSWGSHWGDKGNFKLDMYGP NNCNGKVLYNAFPLLLNMAHNPIDVPLPNDLASTDIRVRYRQSDFNQNRNRNNYPQYDKN SNDNDRNYINPYNKNDNNYNPYNKPHYNDKENDAYYEKNDDYNNAHIRRNTIRFKKRIIK YSLYARIGNTVYKRTIFSKRKDEYKEPYSCLRTFSFEKDSDTKCRSNCEKYIDKCKHNSS IGECLIQHSPNYKCVYCGM

  • title: active site
  • coordinates: Q251,C257,H436,N461
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_0207300378 SYFKVSFKDY0.996unspPF3D7_0207300427 SKVMMSCEDN0.998unsp

PF02_0069      PFB0325c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India