PF3D7_0320700 | signal peptidase complex subunit 2

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  • Fasta :-

    >PF3D7_0320700 MSGNNVQEEDSTFHVSNLYSETEIKKITQDFISEKIREQNFEEIVKYSNIRIFLSLVLIV IGTYCSIFVQYKKNPVIMIQLLVAFFVVSTTLIIFEYFFFDDVFMILRSNNGSLVKLYCR LDVKKSTLILAYKLNKNVFETSFELKRLYNENGYLMKPYAKNVVMNFLSAHGRTLKLKN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0320700.fa Sequence name : PF3D7_0320700 Sequence length : 179 VALUES OF COMPUTED PARAMETERS Coef20 : 3.320 CoefTot : -0.561 ChDiff : 5 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.241 2.471 0.548 0.831 MesoH : 0.449 1.290 -0.069 0.467 MuHd_075 : 19.050 8.400 5.828 0.874 MuHd_095 : 5.472 5.165 2.421 1.662 MuHd_100 : 4.455 1.847 1.282 0.191 MuHd_105 : 10.285 8.394 4.521 1.686 Hmax_075 : 0.087 2.917 -2.962 1.143 Hmax_095 : -4.600 0.700 -3.675 1.417 Hmax_100 : -2.400 1.400 -3.152 1.090 Hmax_105 : 0.583 1.750 -1.601 1.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9790 0.0210 DFMC : 0.9612 0.0388
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 179 PF3D7_0320700 MSGNNVQEEDSTFHVSNLYSETEIKKITQDFISEKIREQNFEEIVKYSNIRIFLSLVLIVIGTYCSIFVQYKKNPVIMIQ 80 LLVAFFVVSTTLIIFEYFFFDDVFMILRSNNGSLVKLYCRLDVKKSTLILAYKLNKNVFETSFELKRLYNENGYLMKPYA 160 KNVVMNFLSAHGRTLKLKN 240 ................................................................................ 80 ................................................................................ 160 ................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0320700 25 YSETEIK|KI 0.066 . PF3D7_0320700 26 SETEIKK|IT 0.089 . PF3D7_0320700 35 QDFISEK|IR 0.068 . PF3D7_0320700 37 FISEKIR|EQ 0.100 . PF3D7_0320700 46 NFEEIVK|YS 0.059 . PF3D7_0320700 51 VKYSNIR|IF 0.072 . PF3D7_0320700 72 SIFVQYK|KN 0.067 . PF3D7_0320700 73 IFVQYKK|NP 0.073 . PF3D7_0320700 108 DVFMILR|SN 0.103 . PF3D7_0320700 116 NNGSLVK|LY 0.056 . PF3D7_0320700 120 LVKLYCR|LD 0.065 . PF3D7_0320700 124 YCRLDVK|KS 0.058 . PF3D7_0320700 125 CRLDVKK|ST 0.121 . PF3D7_0320700 133 TLILAYK|LN 0.066 . PF3D7_0320700 136 LAYKLNK|NV 0.068 . PF3D7_0320700 146 ETSFELK|RL 0.068 . PF3D7_0320700 147 TSFELKR|LY 0.146 . PF3D7_0320700 157 ENGYLMK|PY 0.067 . PF3D7_0320700 161 LMKPYAK|NV 0.071 . PF3D7_0320700 173 FLSAHGR|TL 0.101 . PF3D7_0320700 176 AHGRTLK|LK 0.100 . PF3D7_0320700 178 GRTLKLK|N- 0.074 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0320700 ATGTCAGGCAATAATGTTCAAGAGGAAGATAGCACATTTCATGTGAGCAACTTATACAGC GAAACGGAAATAAAGAAAATTACCCAAGACTTTATAAGTGAAAAAATACGAGAACAAAAT TTTGAGGAAATTGTAAAATACTCAAATATACGAATTTTTTTGAGCTTAGTTTTGATAGTT ATAGGAACATACTGCTCAATATTTGTTCAGTATAAAAAAAACCCAGTGATTATGATACAA CTATTGGTGGCTTTTTTTGTAGTATCAACAACTTTGATTATCTTTGAATATTTTTTCTTT GATGATGTTTTTATGATATTAAGATCGAATAACGGTTCCTTGGTAAAATTGTATTGTCGT TTGGACGTGAAAAAAAGTACCCTAATTTTGGCCTATAAATTAAATAAAAACGTTTTTGAA ACCTCGTTTGAATTAAAAAGACTTTATAATGAGAACGGCTATTTAATGAAACCTTATGCA AAAAATGTTGTTATGAATTTTCTTTCTGCTCATGGACGAACACTGAAATTAAAAAACTAA
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PFC0912w      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India