PF3D7_0506900 | rhomboid protease ROM4

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0506900OTHER0.9998930.0000050.000102
No Results

  • Fasta :-

    >PF3D7_0506900 MGSNTGFNPKNAEKKRSSIFSDLEIPQGDVKKKASIFNNMEKKKMTIFKKTKGENNEEKK KRSIFNNNNNNNNNNNTMKINIFNNNNEKKESFSINGDEKKKSFSINGDEKKESFSINGD EKKESFLINKDEKKESFLINKDEKEKSFSINGDEKKESFSINGDEKKESFSINEDETKKS CSINDDERKISIFSNNEKKKNSIYSDTQSSKREDEKRISIFSDLETSTNIDDISSKRNSQ KLSVYGDNKLKKGSLLSPKVDNYRNTIDNINEINDIKIIVTSDENLHTLPSGAVGRRAPL NPFSSPILGKYRRKNKNAKAKVKDPRLNNNPLIGRLTVCISTTAILFWVFFAEMVFNYNT FNGRCISKVLYPIYTENVVLKRQPFFVFLGYGACEYNLDESASNRHFIGSKASDEGWPGD KVEENPDGRGYANWDSVNNRVYNLLGGLNTNYIRNYGELYRLFWSMYLHGGFMHILFNVI CQIQILWMIEPDWGSIRTGLLFFISGVTGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYY IEYWKTIPRPCCVLIFMFLVVMFGIIVGMFGYTDNYAHIGGCLGGVLFGFSTITTVSAAD KCTLGERMLVSAPFSWFLSNETKELIIAKAKDKKIKGENFRKKQLANKVHKNDALHVAMA VMKNRINDEGRPPCRMKLREWIVRITAASTLIIMWIVLFIYLLNEKAYKSYSPLGQIKFS GVHSCYCCQIVKNKFTYIKVNDFYWCFTTEEATRYYCNK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0506900.fa Sequence name : PF3D7_0506900 Sequence length : 759 VALUES OF COMPUTED PARAMETERS Coef20 : 3.616 CoefTot : -1.015 ChDiff : 26 ZoneTo : 12 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.924 3.218 0.728 1.022 MesoH : 1.168 1.341 0.187 0.569 MuHd_075 : 17.098 10.346 5.783 3.707 MuHd_095 : 6.719 1.951 2.917 1.584 MuHd_100 : 3.136 2.361 3.326 1.056 MuHd_105 : 6.563 2.477 3.623 1.076 Hmax_075 : -4.287 -2.713 -3.243 0.420 Hmax_095 : -8.750 -6.825 -4.621 -0.656 Hmax_100 : -10.100 -7.000 -4.708 -1.430 Hmax_105 : -6.600 -6.400 -3.145 -0.470 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9960 0.0040 DFMC : 0.9930 0.0070
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 759 PF3D7_0506900 MGSNTGFNPKNAEKKRSSIFSDLEIPQGDVKKKASIFNNMEKKKMTIFKKTKGENNEEKKKRSIFNNNNNNNNNNNTMKI 80 NIFNNNNEKKESFSINGDEKKKSFSINGDEKKESFSINGDEKKESFLINKDEKKESFLINKDEKEKSFSINGDEKKESFS 160 INGDEKKESFSINEDETKKSCSINDDERKISIFSNNEKKKNSIYSDTQSSKREDEKRISIFSDLETSTNIDDISSKRNSQ 240 KLSVYGDNKLKKGSLLSPKVDNYRNTIDNINEINDIKIIVTSDENLHTLPSGAVGRRAPLNPFSSPILGKYRRKNKNAKA 320 KVKDPRLNNNPLIGRLTVCISTTAILFWVFFAEMVFNYNTFNGRCISKVLYPIYTENVVLKRQPFFVFLGYGACEYNLDE 400 SASNRHFIGSKASDEGWPGDKVEENPDGRGYANWDSVNNRVYNLLGGLNTNYIRNYGELYRLFWSMYLHGGFMHILFNVI 480 CQIQILWMIEPDWGSIRTGLLFFISGVTGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYYIEYWKTIPRPCCVLIFMFLV 560 VMFGIIVGMFGYTDNYAHIGGCLGGVLFGFSTITTVSAADKCTLGERMLVSAPFSWFLSNETKELIIAKAKDKKIKGENF 640 RKKQLANKVHKNDALHVAMAVMKNRINDEGRPPCRMKLREWIVRITAASTLIIMWIVLFIYLLNEKAYKSYSPLGQIKFS 720 GVHSCYCCQIVKNKFTYIKVNDFYWCFTTEEATRYYCNK 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ....................................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0506900 10 NTGFNPK|NA 0.086 . PF3D7_0506900 14 NPKNAEK|KR 0.066 . PF3D7_0506900 15 PKNAEKK|RS 0.115 . PF3D7_0506900 16 KNAEKKR|SS 0.438 . PF3D7_0506900 31 IPQGDVK|KK 0.063 . PF3D7_0506900 32 PQGDVKK|KA 0.148 . PF3D7_0506900 33 QGDVKKK|AS 0.116 . PF3D7_0506900 42 IFNNMEK|KK 0.070 . PF3D7_0506900 43 FNNMEKK|KM 0.103 . PF3D7_0506900 44 NNMEKKK|MT 0.128 . PF3D7_0506900 49 KKMTIFK|KT 0.080 . PF3D7_0506900 50 KMTIFKK|TK 0.110 . PF3D7_0506900 52 TIFKKTK|GE 0.074 . PF3D7_0506900 59 GENNEEK|KK 0.072 . PF3D7_0506900 60 ENNEEKK|KR 0.095 . PF3D7_0506900 61 NNEEKKK|RS 0.081 . PF3D7_0506900 62 NEEKKKR|SI 0.421 . PF3D7_0506900 79 NNNNTMK|IN 0.071 . PF3D7_0506900 89 FNNNNEK|KE 0.065 . PF3D7_0506900 90 NNNNEKK|ES 0.131 . PF3D7_0506900 100 SINGDEK|KK 0.068 . PF3D7_0506900 101 INGDEKK|KS 0.107 . PF3D7_0506900 102 NGDEKKK|SF 0.167 . PF3D7_0506900 111 SINGDEK|KE 0.066 . PF3D7_0506900 112 INGDEKK|ES 0.109 . PF3D7_0506900 122 SINGDEK|KE 0.060 . PF3D7_0506900 123 INGDEKK|ES 0.100 . PF3D7_0506900 130 ESFLINK|DE 0.061 . PF3D7_0506900 133 LINKDEK|KE 0.060 . PF3D7_0506900 134 INKDEKK|ES 0.096 . PF3D7_0506900 141 ESFLINK|DE 0.062 . PF3D7_0506900 144 LINKDEK|EK 0.069 . PF3D7_0506900 146 NKDEKEK|SF 0.089 . PF3D7_0506900 155 SINGDEK|KE 0.066 . PF3D7_0506900 156 INGDEKK|ES 0.109 . PF3D7_0506900 166 SINGDEK|KE 0.064 . PF3D7_0506900 167 INGDEKK|ES 0.107 . PF3D7_0506900 178 INEDETK|KS 0.066 . PF3D7_0506900 179 NEDETKK|SC 0.118 . PF3D7_0506900 188 SINDDER|KI 0.091 . PF3D7_0506900 189 INDDERK|IS 0.075 . PF3D7_0506900 198 IFSNNEK|KK 0.065 . PF3D7_0506900 199 FSNNEKK|KN 0.121 . PF3D7_0506900 200 SNNEKKK|NS 0.155 . PF3D7_0506900 211 SDTQSSK|RE 0.062 . PF3D7_0506900 212 DTQSSKR|ED 0.173 . PF3D7_0506900 216 SKREDEK|RI 0.070 . PF3D7_0506900 217 KREDEKR|IS 0.180 . PF3D7_0506900 236 IDDISSK|RN 0.070 . PF3D7_0506900 237 DDISSKR|NS 0.125 . PF3D7_0506900 241 SKRNSQK|LS 0.072 . PF3D7_0506900 249 SVYGDNK|LK 0.060 . PF3D7_0506900 251 YGDNKLK|KG 0.055 . PF3D7_0506900 252 GDNKLKK|GS 0.109 . PF3D7_0506900 259 GSLLSPK|VD 0.056 . PF3D7_0506900 264 PKVDNYR|NT 0.096 . PF3D7_0506900 277 NEINDIK|II 0.061 . PF3D7_0506900 296 PSGAVGR|RA 0.094 . PF3D7_0506900 297 SGAVGRR|AP 0.115 . PF3D7_0506900 310 SSPILGK|YR 0.070 . PF3D7_0506900 312 PILGKYR|RK 0.076 . PF3D7_0506900 313 ILGKYRR|KN 0.123 . PF3D7_0506900 314 LGKYRRK|NK 0.083 . PF3D7_0506900 316 KYRRKNK|NA 0.216 . PF3D7_0506900 319 RKNKNAK|AK 0.073 . PF3D7_0506900 321 NKNAKAK|VK 0.090 . PF3D7_0506900 323 NAKAKVK|DP 0.070 . PF3D7_0506900 326 AKVKDPR|LN 0.092 . PF3D7_0506900 335 NNPLIGR|LT 0.070 . PF3D7_0506900 364 YNTFNGR|CI 0.113 . PF3D7_0506900 368 NGRCISK|VL 0.065 . PF3D7_0506900 381 TENVVLK|RQ 0.062 . PF3D7_0506900 382 ENVVLKR|QP 0.147 . PF3D7_0506900 405 DESASNR|HF 0.124 . PF3D7_0506900 411 RHFIGSK|AS 0.070 . PF3D7_0506900 421 EGWPGDK|VE 0.052 . PF3D7_0506900 429 EENPDGR|GY 0.080 . PF3D7_0506900 440 WDSVNNR|VY 0.089 . PF3D7_0506900 454 LNTNYIR|NY 0.084 . PF3D7_0506900 461 NYGELYR|LF 0.074 . PF3D7_0506900 497 PDWGSIR|TG 0.067 . PF3D7_0506900 545 YYIEYWK|TI 0.054 . PF3D7_0506900 549 YWKTIPR|PC 0.090 . PF3D7_0506900 601 TVSAADK|CT 0.078 . PF3D7_0506900 607 KCTLGER|ML 0.074 . PF3D7_0506900 623 FLSNETK|EL 0.069 . PF3D7_0506900 629 KELIIAK|AK 0.079 . PF3D7_0506900 631 LIIAKAK|DK 0.085 . PF3D7_0506900 633 IAKAKDK|KI 0.067 . PF3D7_0506900 634 AKAKDKK|IK 0.137 . PF3D7_0506900 636 AKDKKIK|GE 0.073 . PF3D7_0506900 641 IKGENFR|KK 0.083 . PF3D7_0506900 642 KGENFRK|KQ 0.072 . PF3D7_0506900 643 GENFRKK|QL 0.156 . PF3D7_0506900 648 KKQLANK|VH 0.056 . PF3D7_0506900 651 LANKVHK|ND 0.068 . PF3D7_0506900 663 VAMAVMK|NR 0.063 . PF3D7_0506900 665 MAVMKNR|IN 0.131 . PF3D7_0506900 671 RINDEGR|PP 0.088 . PF3D7_0506900 675 EGRPPCR|MK 0.077 . PF3D7_0506900 677 RPPCRMK|LR 0.075 . PF3D7_0506900 679 PCRMKLR|EW 0.109 . PF3D7_0506900 684 LREWIVR|IT 0.103 . PF3D7_0506900 706 IYLLNEK|AY 0.052 . PF3D7_0506900 709 LNEKAYK|SY 0.093 . PF3D7_0506900 718 SPLGQIK|FS 0.073 . PF3D7_0506900 732 YCCQIVK|NK 0.058 . PF3D7_0506900 734 CQIVKNK|FT 0.088 . PF3D7_0506900 739 NKFTYIK|VN 0.058 . PF3D7_0506900 754 TTEEATR|YY 0.095 . PF3D7_0506900 759 TRYYCNK|-- 0.084 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0506900 ATGGGATCTAATACAGGGTTTAATCCGAAAAATGCCGAGAAAAAAAGAAGCAGCATATTT AGCGATTTAGAAATTCCGCAGGGTGATGTGAAGAAAAAAGCTAGTATATTCAATAATATG GAAAAGAAGAAAATGACTATATTCAAGAAGACAAAGGGTGAAAATAATGAAGAGAAAAAA AAAAGAAGCATATTTAATAATAATAACAATAATAATAATAATAATAATACAATGAAAATT AACATATTTAATAATAATAATGAAAAAAAAGAAAGCTTTTCAATTAATGGAGATGAAAAG AAAAAAAGCTTTTCCATTAATGGAGATGAAAAAAAAGAAAGCTTTTCCATTAATGGAGAT GAAAAAAAAGAAAGCTTTTTAATTAACAAAGATGAAAAAAAAGAAAGCTTTTTAATTAAC AAAGATGAAAAAGAAAAAAGCTTTTCCATTAATGGAGATGAAAAAAAAGAAAGCTTTTCC ATTAATGGAGATGAAAAAAAAGAAAGCTTTTCCATTAATGAAGATGAAACAAAAAAGAGC TGTTCAATTAATGACGATGAAAGGAAAATTAGTATATTCAGTAATAATGAAAAAAAAAAA AACAGCATATATAGTGATACGCAATCTTCTAAGAGAGAAGATGAAAAAAGAATTAGTATA TTTAGTGACTTAGAAACATCAACTAATATAGATGATATATCTTCCAAGAGGAATTCACAA AAATTATCAGTATATGGAGATAATAAATTAAAAAAAGGTTCTTTATTAAGTCCTAAAGTG GATAATTATAGGAATACAATTGATAATATAAATGAAATAAATGATATAAAAATTATTGTA ACAAGTGATGAGAATTTACATACGCTACCATCTGGAGCTGTTGGTAGACGTGCTCCTTTA AATCCTTTTTCATCTCCTATTCTTGGAAAATATAGAAGAAAGAATAAAAATGCAAAAGCA AAAGTCAAAGATCCAAGATTAAACAACAATCCTTTGATAGGCAGATTAACAGTATGTATA TCAACCACTGCTATATTGTTTTGGGTATTTTTTGCGGAAATGGTTTTTAATTATAATACA TTTAATGGGAGATGTATATCGAAAGTTTTATACCCTATTTATACTGAAAATGTGGTTCTT AAGAGGCAGCCGTTTTTTGTATTCTTAGGATATGGTGCATGTGAATACAATTTAGATGAG TCTGCATCTAATAGACATTTTATTGGTTCTAAAGCATCCGATGAAGGGTGGCCTGGAGAT AAAGTAGAAGAAAATCCAGATGGTAGAGGATATGCTAACTGGGATTCTGTAAATAATCGT GTATATAATTTATTAGGAGGTTTAAATACCAATTATATAAGAAATTATGGGGAACTATAT AGATTATTTTGGTCTATGTATTTACATGGTGGATTCATGCATATTTTATTTAATGTAATT TGTCAAATTCAAATCTTATGGATGATTGAACCTGATTGGGGATCCATTAGAACAGGTCTT TTATTCTTTATTTCTGGTGTAACCGGGAATTTATTATCAGCTGTTTGTGATCCTTGTGGT GTTACTATAGGTTCTTCGGGTTCTTTATATGGTTTAATAGGAGCTTTATTTGCGTATTAT ATTGAATATTGGAAAACGATTCCAAGACCTTGTTGCGTTTTAATTTTTATGTTCCTTGTA GTAATGTTTGGAATTATTGTAGGAATGTTTGGATATACAGATAATTATGCTCACATAGGG GGTTGTCTAGGTGGTGTTTTATTTGGATTTTCGACTATTACAACTGTGTCAGCTGCTGAT AAATGTACCTTAGGAGAAAGAATGCTTGTGTCTGCTCCTTTCTCTTGGTTTCTTTCAAAT GAAACAAAGGAACTAATAATTGCAAAAGCAAAAGACAAAAAAATCAAAGGAGAAAATTTC AGAAAGAAACAACTAGCTAATAAAGTACATAAAAATGATGCTCTTCATGTAGCTATGGCT GTTATGAAAAATAGAATAAATGATGAAGGTAGACCTCCATGTCGCATGAAATTAAGAGAA TGGATAGTACGTATCACTGCTGCATCAACATTAATTATTATGTGGATAGTTTTATTTATT TATTTGTTAAATGAAAAGGCATACAAATCATATTCCCCATTGGGACAAATAAAATTCTCT GGTGTCCATTCATGTTATTGTTGTCAAATAGTAAAGAATAAATTTACTTACATTAAGGTA AATGATTTTTATTGGTGTTTTACAACTGAAGAAGCAACAAGATATTATTGTAATAAGTAG
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  • Fasta :-

    MGSNTGFNPKNAEKKRSSIFSDLEIPQGDVKKKASIFNNMEKKKMTIFKKTKGENNEEKK KRSIFNNNNNNNNNNNTMKINIFNNNNEKKESFSINGDEKKKSFSINGDEKKESFSINGD EKKESFLINKDEKKESFLINKDEKEKSFSINGDEKKESFSINGDEKKESFSINEDETKKS CSINDDERKISIFSNNEKKKNSIYSDTQSSKREDEKRISIFSDLETSTNIDDISSKRNSQ KLSVYGDNKLKKGSLLSPKVDNYRNTIDNINEINDIKIIVTSDENLHTLPSGAVGRRAPL NPFSSPILGKYRRKNKNAKAKVKDPRLNNNPLIGRLTVCISTTAILFWVFFAEMVFNYNT FNGRCISKVLYPIYTENVVLKRQPFFVFLGYGACEYNLDESASNRHFIGSKASDEGWPGD KVEENPDGRGYANWDSVNNRVYNLLGGLNTNYIRNYGELYRLFWSMYLHGGFMHILFNVI CQIQILWMIEPDWGSIRTGLLFFISGVTGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYY IEYWKTIPRPCCVLIFMFLVVMFGIIVGMFGYTDNYAHIGGCLGGVLFGFSTITTVSAAD KCTLGERMLVSAPFSWFLSNETKELIIAKAKDKKIKGENFRKKQLANKVHKNDALHVAMA VMKNRINDEGRPPCRMKLREWIVRITAASTLIIMWIVLFIYLLNEKAYKSYSPLGQIKFS GVHSCYCCQIVKNKFTYIKVNDFYWCFTTEEATRYYCNK

No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_0506900182 SKKSCSINDD0.995unspPF3D7_0506900182 SKKSCSINDD0.995unspPF3D7_0506900182 SKKSCSINDD0.995unspPF3D7_0506900209 SSDTQSSKRE0.992unspPF3D7_0506900210 SDTQSSKRED0.997unspPF3D7_0506900239 SSKRNSQKLS0.997unspPF3D7_050690018 SKKRSSIFSD0.991unspPF3D7_0506900171 SKESFSINED0.994unsp

MAL5P1.70      PFE0340c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India