PF3D7_0627300 | E3 ubiquitin-protein ligase RNF5, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:  GO:0008270      

  • Curated_GO_Functions:  zinc ion binding      

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0627300OTHER0.9999920.0000010.000006
No Results

  • Fasta :-

    >PF3D7_0627300 MNGPEEDYDSLYDIMYDYDINDEHFNQHRNLNNININDNVSEKKIHSEQVIPLNNKYEKE KENYNSNIIKKNYEQNEQEHMGNDKNVHSLLSDNLIDQEKKQFNDNKNDLYADKDIINNN IYYMNETNIPKDNIKLEEHNDNSNMEYTINNEQRIHNTYDMTSEKENEKENHDVEDNSKL NTFNKGNNKYSFKYGEIYNDTCTDINISTTYDQGNKEKETDVNGNKNNINITEEKAYEHH DKEEDINANENNNCEQNANVKDNNNNNNNNNNVNKPNTATENESRNTFECNICFDDVRDP VVTKCGHLFCWLCLSAWIKKNNDCPVCKAEVSKENVIPLYGRGKNSSDHKYAQPEEPRPT PKRKEGVRRNNTYSNNLGLRASFGVWVNPFSFGLSYTNMSEEPYFYENRNENRSDNRRLQ TETYQAEAASSFFFFLGFFLSLYILFYSS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0627300.fa Sequence name : PF3D7_0627300 Sequence length : 449 VALUES OF COMPUTED PARAMETERS Coef20 : 2.306 CoefTot : -0.637 ChDiff : -28 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.488 2.071 0.345 0.873 MesoH : -0.966 -0.241 -0.542 0.086 MuHd_075 : 19.062 12.952 3.989 2.059 MuHd_095 : 38.446 17.656 9.881 5.596 MuHd_100 : 38.917 19.390 9.550 6.074 MuHd_105 : 31.950 18.029 7.441 5.432 Hmax_075 : -6.883 0.583 -4.224 1.190 Hmax_095 : 7.300 4.200 -0.714 3.280 Hmax_100 : 7.300 3.400 -0.714 3.280 Hmax_105 : 1.663 3.850 -1.453 3.080 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9943 0.0057 DFMC : 0.9896 0.0104
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 449 PF3D7_0627300 MNGPEEDYDSLYDIMYDYDINDEHFNQHRNLNNININDNVSEKKIHSEQVIPLNNKYEKEKENYNSNIIKKNYEQNEQEH 80 MGNDKNVHSLLSDNLIDQEKKQFNDNKNDLYADKDIINNNIYYMNETNIPKDNIKLEEHNDNSNMEYTINNEQRIHNTYD 160 MTSEKENEKENHDVEDNSKLNTFNKGNNKYSFKYGEIYNDTCTDINISTTYDQGNKEKETDVNGNKNNINITEEKAYEHH 240 DKEEDINANENNNCEQNANVKDNNNNNNNNNNVNKPNTATENESRNTFECNICFDDVRDPVVTKCGHLFCWLCLSAWIKK 320 NNDCPVCKAEVSKENVIPLYGRGKNSSDHKYAQPEEPRPTPKRKEGVRRNNTYSNNLGLRASFGVWVNPFSFGLSYTNMS 400 EEPYFYENRNENRSDNRRLQTETYQAEAASSFFFFLGFFLSLYILFYSS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0627300 29 EHFNQHR|NL 0.089 . PF3D7_0627300 43 NDNVSEK|KI 0.081 . PF3D7_0627300 44 DNVSEKK|IH 0.094 . PF3D7_0627300 56 VIPLNNK|YE 0.059 . PF3D7_0627300 59 LNNKYEK|EK 0.072 . PF3D7_0627300 61 NKYEKEK|EN 0.067 . PF3D7_0627300 70 YNSNIIK|KN 0.080 . PF3D7_0627300 71 NSNIIKK|NY 0.184 . PF3D7_0627300 85 EHMGNDK|NV 0.079 . PF3D7_0627300 100 NLIDQEK|KQ 0.059 . PF3D7_0627300 101 LIDQEKK|QF 0.092 . PF3D7_0627300 107 KQFNDNK|ND 0.065 . PF3D7_0627300 114 NDLYADK|DI 0.067 . PF3D7_0627300 131 NETNIPK|DN 0.072 . PF3D7_0627300 135 IPKDNIK|LE 0.064 . PF3D7_0627300 154 TINNEQR|IH 0.141 . PF3D7_0627300 165 YDMTSEK|EN 0.074 . PF3D7_0627300 169 SEKENEK|EN 0.073 . PF3D7_0627300 179 DVEDNSK|LN 0.054 . PF3D7_0627300 185 KLNTFNK|GN 0.073 . PF3D7_0627300 189 FNKGNNK|YS 0.069 . PF3D7_0627300 193 NNKYSFK|YG 0.079 . PF3D7_0627300 216 TYDQGNK|EK 0.058 . PF3D7_0627300 218 DQGNKEK|ET 0.073 . PF3D7_0627300 226 TDVNGNK|NN 0.060 . PF3D7_0627300 235 INITEEK|AY 0.071 . PF3D7_0627300 242 AYEHHDK|EE 0.069 . PF3D7_0627300 261 EQNANVK|DN 0.069 . PF3D7_0627300 275 NNNNVNK|PN 0.085 . PF3D7_0627300 285 ATENESR|NT 0.088 . PF3D7_0627300 298 ICFDDVR|DP 0.077 . PF3D7_0627300 304 RDPVVTK|CG 0.057 . PF3D7_0627300 319 CLSAWIK|KN 0.071 . PF3D7_0627300 320 LSAWIKK|NN 0.090 . PF3D7_0627300 328 NDCPVCK|AE 0.066 . PF3D7_0627300 333 CKAEVSK|EN 0.065 . PF3D7_0627300 342 VIPLYGR|GK 0.078 . PF3D7_0627300 344 PLYGRGK|NS 0.067 . PF3D7_0627300 350 KNSSDHK|YA 0.111 . PF3D7_0627300 358 AQPEEPR|PT 0.079 . PF3D7_0627300 362 EPRPTPK|RK 0.079 . PF3D7_0627300 363 PRPTPKR|KE 0.191 . PF3D7_0627300 364 RPTPKRK|EG 0.089 . PF3D7_0627300 368 KRKEGVR|RN 0.084 . PF3D7_0627300 369 RKEGVRR|NN 0.164 . PF3D7_0627300 380 SNNLGLR|AS 0.100 . PF3D7_0627300 409 PYFYENR|NE 0.070 . PF3D7_0627300 413 ENRNENR|SD 0.152 . PF3D7_0627300 417 ENRSDNR|RL 0.088 . PF3D7_0627300 418 NRSDNRR|LQ 0.146 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0627300 ATGAATGGTCCAGAAGAAGATTATGATTCTCTTTATGACATTATGTATGATTATGATATA AACGATGAACATTTTAATCAGCATAGGAATTTAAACAATATTAACATAAATGATAATGTA TCTGAAAAGAAAATTCATTCTGAACAAGTTATCCCTTTAAATAATAAATATGAAAAAGAA AAGGAAAACTATAATAGTAATATAATAAAAAAAAACTATGAGCAAAATGAACAAGAGCAT ATGGGGAACGATAAAAACGTGCATTCATTATTATCAGATAATTTAATTGACCAAGAAAAA AAACAATTTAATGATAATAAGAATGATTTGTATGCCGATAAAGATATTATTAATAATAAT ATATATTATATGAATGAAACAAATATACCGAAAGATAATATTAAATTGGAAGAACATAAT GATAATAGTAATATGGAGTACACAATAAATAACGAACAAAGAATTCATAATACTTATGAT ATGACAAGTGAAAAAGAAAATGAAAAGGAAAATCACGATGTAGAAGATAATTCGAAATTA AATACTTTTAATAAGGGTAATAATAAATATTCTTTTAAATATGGTGAAATATACAATGAT ACATGTACTGATATTAACATTAGTACTACATATGATCAGGGTAATAAAGAAAAGGAAACA GATGTTAATGGAAATAAGAATAATATTAATATAACCGAGGAAAAAGCATATGAACATCAT GACAAGGAGGAAGATATTAATGCAAATGAAAATAATAATTGTGAGCAAAACGCAAATGTT AAAGATAATAATAATAATAATAATAATAATAATAATGTAAATAAGCCCAATACGGCTACA GAAAATGAAAGTAGAAATACCTTTGAATGTAATATATGTTTTGATGATGTGAGAGACCCG GTAGTTACAAAATGTGGTCATTTATTTTGCTGGCTATGCTTGTCAGCATGGATAAAAAAA AATAATGACTGCCCTGTATGTAAAGCTGAAGTATCCAAAGAAAATGTTATTCCCTTATAT GGAAGAGGAAAAAATAGTAGTGATCATAAATATGCACAACCAGAAGAACCTAGACCAACA CCTAAAAGAAAAGAAGGAGTAAGAAGAAATAACACCTATTCTAATAATTTAGGTTTAAGA GCTTCTTTTGGTGTATGGGTAAATCCTTTCTCCTTTGGTTTATCATATACAAACATGTCA GAAGAACCATATTTTTATGAAAATAGAAACGAAAACAGATCAGATAATAGACGATTACAA ACAGAAACATATCAAGCAGAAGCTGCTTCTTCCTTCTTCTTTTTTCTAGGATTCTTCCTA TCCTTATATATTTTGTTTTATTCCTCTTAA
  • Download Fasta

  • Fasta :-

    MNGPEEDYDSLYDIMYDYDINDEHFNQHRNLNNININDNVSEKKIHSEQVIPLNNKYEKE KENYNSNIIKKNYEQNEQEHMGNDKNVHSLLSDNLIDQEKKQFNDNKNDLYADKDIINNN IYYMNETNIPKDNIKLEEHNDNSNMEYTINNEQRIHNTYDMTSEKENEKENHDVEDNSKL NTFNKGNNKYSFKYGEIYNDTCTDINISTTYDQGNKEKETDVNGNKNNINITEEKAYEHH DKEEDINANENNNCEQNANVKDNNNNNNNNNNVNKPNTATENESRNTFECNICFDDVRDP VVTKCGHLFCWLCLSAWIKKNNDCPVCKAEVSKENVIPLYGRGKNSSDHKYAQPEEPRPT PKRKEGVRRNNTYSNNLGLRASFGVWVNPFSFGLSYTNMSEEPYFYENRNENRSDNRRLQ TETYQAEAASSFFFFLGFFLSLYILFYSS

  • title: Zn binding site
  • coordinates: C290,C293,C305,H307,C310,C313,C324,C327
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_062730041 SNDNVSEKKI0.991unspPF3D7_062730041 SNDNVSEKKI0.991unspPF3D7_062730041 SNDNVSEKKI0.991unspPF3D7_0627300163 SYDMTSEKEN0.998unspPF3D7_0627300360 TEPRPTPKRK0.994unspPF3D7_06273008 YPEEDYDSLY0.991unspPF3D7_062730010 SEDYDSLYDI0.991unsp

2270.t00160      MAL6P1.155      PFF1325c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India