PF3D7_0807500 | proteasome subunit alpha type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0807500OTHER0.9994460.0003720.000182
No Results

  • Fasta :-

    >PF3D7_0807500 MVRPSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSVGVKGENCAVIISQKKMATQY ISQDKLLDYNNITNIYNITDEIGCSMVGMPGDCLSMVYKARSEASEFLYSNGYNVNAETL CRNICDKIQVYTQHAYMRLHACSGMIIGIDENNKPELFKFDPSGFCAGYRACVIGNKEQE SISVLERLLEKRKKKIQQETIDEDIRNTTILAIEALQTILAFDLKASEIEVAIVSTKNRN FTQISEKEIDNYLTYIAERD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0807500.fa Sequence name : PF3D7_0807500 Sequence length : 260 VALUES OF COMPUTED PARAMETERS Coef20 : 3.676 CoefTot : -0.206 ChDiff : -5 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.141 1.429 0.245 0.531 MesoH : -0.785 0.073 -0.371 0.131 MuHd_075 : 7.865 1.889 2.677 1.617 MuHd_095 : 33.578 15.000 5.745 7.056 MuHd_100 : 31.226 16.898 5.471 7.198 MuHd_105 : 24.209 14.115 4.245 5.880 Hmax_075 : 7.350 0.600 -0.714 2.555 Hmax_095 : 11.000 5.775 -0.465 3.420 Hmax_100 : 11.000 7.400 -0.667 3.720 Hmax_105 : 9.700 8.100 -0.439 4.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9334 0.0666 DFMC : 0.9581 0.0419
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 260 PF3D7_0807500 MVRPSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSVGVKGENCAVIISQKKMATQYISQDKLLDYNNITNIYNITD 80 EIGCSMVGMPGDCLSMVYKARSEASEFLYSNGYNVNAETLCRNICDKIQVYTQHAYMRLHACSGMIIGIDENNKPELFKF 160 DPSGFCAGYRACVIGNKEQESISVLERLLEKRKKKIQQETIDEDIRNTTILAIEALQTILAFDLKASEIEVAIVSTKNRN 240 FTQISEKEIDNYLTYIAERD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0807500 3 ----MVR|PS 0.081 . PF3D7_0807500 11 SQSMYDR|HL 0.111 . PF3D7_0807500 30 QIEYAIK|AV 0.070 . PF3D7_0807500 33 YAIKAVK|NT 0.059 . PF3D7_0807500 43 ITSVGVK|GE 0.066 . PF3D7_0807500 54 AVIISQK|KM 0.059 . PF3D7_0807500 55 VIISQKK|MA 0.131 . PF3D7_0807500 65 QYISQDK|LL 0.063 . PF3D7_0807500 99 CLSMVYK|AR 0.080 . PF3D7_0807500 101 SMVYKAR|SE 0.141 . PF3D7_0807500 122 NAETLCR|NI 0.095 . PF3D7_0807500 127 CRNICDK|IQ 0.068 . PF3D7_0807500 138 TQHAYMR|LH 0.105 . PF3D7_0807500 154 GIDENNK|PE 0.055 . PF3D7_0807500 159 NKPELFK|FD 0.069 . PF3D7_0807500 170 GFCAGYR|AC 0.088 . PF3D7_0807500 177 ACVIGNK|EQ 0.056 . PF3D7_0807500 187 SISVLER|LL 0.100 . PF3D7_0807500 191 LERLLEK|RK 0.060 . PF3D7_0807500 192 ERLLEKR|KK 0.190 . PF3D7_0807500 193 RLLEKRK|KK 0.093 . PF3D7_0807500 194 LLEKRKK|KI 0.125 . PF3D7_0807500 195 LEKRKKK|IQ 0.290 . PF3D7_0807500 206 TIDEDIR|NT 0.070 . PF3D7_0807500 225 ILAFDLK|AS 0.068 . PF3D7_0807500 237 VAIVSTK|NR 0.058 . PF3D7_0807500 239 IVSTKNR|NF 0.124 . PF3D7_0807500 247 FTQISEK|EI 0.074 . PF3D7_0807500 259 LTYIAER|D- 0.102 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0807500 ATGGTAAGGCCTTCACAGAGTATGTATGATAGACACTTGACGATTTTTTCTCCAGATGGG AATTTATATCAAATAGAATATGCTATAAAAGCAGTAAAAAATACAAATATAACCTCCGTA GGAGTAAAGGGAGAAAATTGTGCTGTAATAATTTCCCAAAAGAAAATGGCTACACAATAT ATTTCTCAAGATAAATTATTAGATTATAATAACATAACTAATATATATAATATAACAGAT GAAATAGGATGCTCAATGGTAGGTATGCCAGGAGATTGTTTAAGTATGGTTTATAAAGCT AGATCAGAAGCATCCGAATTTTTATATAGTAACGGATATAATGTAAATGCCGAAACGTTA TGTAGAAATATTTGTGATAAAATACAAGTGTATACACAACATGCCTATATGAGACTACAC GCTTGCAGTGGAATGATTATTGGCATAGATGAAAATAATAAACCTGAACTTTTTAAATTT GATCCTTCTGGTTTTTGTGCGGGATATCGTGCTTGTGTTATTGGAAACAAGGAACAAGAG AGCATAAGTGTTTTAGAAAGATTATTAGAAAAAAGAAAGAAGAAAATACAACAAGAAACA ATAGATGAAGATATACGAAACACCACCATTTTGGCAATTGAAGCTTTACAAACAATTCTC GCATTTGATTTAAAAGCAAGCGAAATAGAAGTTGCAATCGTATCAACAAAAAATCGTAAT TTTACACAAATAAGTGAAAAAGAAATAGATAATTATTTAACATATATAGCTGAGAGGGAT TAA
  • Download Fasta

  • Fasta :-

    MVRPSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSVGVKGENCAVIISQKKMATQY ISQDKLLDYNNITNIYNITDEIGCSMVGMPGDCLSMVYKARSEASEFLYSNGYNVNAETL CRNICDKIQVYTQHAYMRLHACSGMIIGIDENNKPELFKFDPSGFCAGYRACVIGNKEQE SISVLERLLEKRKKKIQQETIDEDIRNTTILAIEALQTILAFDLKASEIEVAIVSTKNRN FTQISEKEIDNYLTYIAERD

    No Results
  • title: active site
  • coordinates: I37,Q53,K55,N74,N176
  • 5fmg.pdb
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MAL8P1.128      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India