_IDPredictionOTHERSPmTPCS_Position
PF3D7_0808200SP0.2667240.7295990.003677CS pos: 23-24. FKG-LK. Pr: 0.5213
No Results
  • Fasta :-

    >PF3D7_0808200 MKRISPLNTLFYLSLFFSYTFKGLKCTRIYKIGTKALPCSECHDVFDCTGCLFEEKESSH VIPLKLNKKNPNDHKKLQKHHESLKLGDVKYYVNRGEGISGSLGTSSGNTLDDMDLINEE INKKRTNAQLDEKNFLDFTTYNKNKAQDISDHLSDIQKHVYEQDAQKGNKNFTNNENNSD NENNSDNENNSDNENNLDNENNLDNENNSDNSSIEKNFIALENKNATVEQTKENIFLVPL KHLRDSQFVGELLVGTPPQTVYPIFDTGSTNVWVVTTACEEESCKKVRRYDPNKSKTFRR SFIEKNLHIVFGSGSISGSVGTDTFMLGKHLVRNQTFGLVESESNNNKNGGDNIFDYISF EGIVGLGFPGMLSAGNIPFFDNLLKQNPNVDPQFSFYISPYDGKSTLIIGGISKSFYEGD IYMLPVLKESYWEVKLDELYIGKERICCDEESYVIFDTGTSYNTMPSSQMKTFLNLIHST ACTEQNYKDILKSYPIIKYVFGELIIELHPEEYMILNDDVCMPAYMQIDVPSERNHAYLL GSLSFMRNFFTVFVRGTESRPSMVGVARAKSKN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0808200.fa Sequence name : PF3D7_0808200 Sequence length : 573 VALUES OF COMPUTED PARAMETERS Coef20 : 4.529 CoefTot : -0.585 ChDiff : -17 ZoneTo : 40 KR : 7 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.576 1.282 0.165 0.645 MesoH : -0.221 0.283 -0.315 0.316 MuHd_075 : 23.407 15.190 6.055 5.133 MuHd_095 : 21.912 15.370 5.997 4.689 MuHd_100 : 30.961 18.616 9.035 6.152 MuHd_105 : 37.635 20.848 11.758 7.484 Hmax_075 : 15.283 19.017 2.212 6.280 Hmax_095 : 9.200 9.000 2.640 3.600 Hmax_100 : 10.400 20.000 3.322 3.970 Hmax_105 : 10.800 16.900 5.862 4.630 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0672 0.9328 DFMC : 0.0451 0.9549 This protein is probably imported in mitochondria. f(Ser) = 0.1000 f(Arg) = 0.0500 CMi = 0.71429 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 573 PF3D7_0808200 MKRISPLNTLFYLSLFFSYTFKGLKCTRIYKIGTKALPCSECHDVFDCTGCLFEEKESSHVIPLKLNKKNPNDHKKLQKH 80 HESLKLGDVKYYVNRGEGISGSLGTSSGNTLDDMDLINEEINKKRTNAQLDEKNFLDFTTYNKNKAQDISDHLSDIQKHV 160 YEQDAQKGNKNFTNNENNSDNENNSDNENNSDNENNLDNENNLDNENNSDNSSIEKNFIALENKNATVEQTKENIFLVPL 240 KHLRDSQFVGELLVGTPPQTVYPIFDTGSTNVWVVTTACEEESCKKVRRYDPNKSKTFRRSFIEKNLHIVFGSGSISGSV 320 GTDTFMLGKHLVRNQTFGLVESESNNNKNGGDNIFDYISFEGIVGLGFPGMLSAGNIPFFDNLLKQNPNVDPQFSFYISP 400 YDGKSTLIIGGISKSFYEGDIYMLPVLKESYWEVKLDELYIGKERICCDEESYVIFDTGTSYNTMPSSQMKTFLNLIHST 480 ACTEQNYKDILKSYPIIKYVFGELIIELHPEEYMILNDDVCMPAYMQIDVPSERNHAYLLGSLSFMRNFFTVFVRGTESR 560 PSMVGVARAKSKN 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0808200 2 -----MK|RI 0.070 . PF3D7_0808200 3 ----MKR|IS 0.123 . PF3D7_0808200 22 FFSYTFK|GL 0.066 . PF3D7_0808200 25 YTFKGLK|CT 0.058 . PF3D7_0808200 28 KGLKCTR|IY 0.089 . PF3D7_0808200 31 KCTRIYK|IG 0.117 . PF3D7_0808200 35 IYKIGTK|AL 0.062 . PF3D7_0808200 56 GCLFEEK|ES 0.066 . PF3D7_0808200 65 SHVIPLK|LN 0.067 . PF3D7_0808200 68 IPLKLNK|KN 0.056 . PF3D7_0808200 69 PLKLNKK|NP 0.077 . PF3D7_0808200 75 KNPNDHK|KL 0.067 . PF3D7_0808200 76 NPNDHKK|LQ 0.133 . PF3D7_0808200 79 DHKKLQK|HH 0.064 . PF3D7_0808200 85 KHHESLK|LG 0.062 . PF3D7_0808200 90 LKLGDVK|YY 0.065 . PF3D7_0808200 95 VKYYVNR|GE 0.124 . PF3D7_0808200 123 INEEINK|KR 0.058 . PF3D7_0808200 124 NEEINKK|RT 0.094 . PF3D7_0808200 125 EEINKKR|TN 0.151 . PF3D7_0808200 133 NAQLDEK|NF 0.055 . PF3D7_0808200 143 DFTTYNK|NK 0.053 . PF3D7_0808200 145 TTYNKNK|AQ 0.080 . PF3D7_0808200 158 HLSDIQK|HV 0.100 . PF3D7_0808200 167 YEQDAQK|GN 0.062 . PF3D7_0808200 170 DAQKGNK|NF 0.067 . PF3D7_0808200 216 DNSSIEK|NF 0.069 . PF3D7_0808200 224 FIALENK|NA 0.068 . PF3D7_0808200 232 ATVEQTK|EN 0.060 . PF3D7_0808200 241 IFLVPLK|HL 0.070 . PF3D7_0808200 244 VPLKHLR|DS 0.105 . PF3D7_0808200 285 CEEESCK|KV 0.070 . PF3D7_0808200 286 EEESCKK|VR 0.067 . PF3D7_0808200 288 ESCKKVR|RY 0.105 . PF3D7_0808200 289 SCKKVRR|YD 0.170 . PF3D7_0808200 294 RRYDPNK|SK 0.081 . PF3D7_0808200 296 YDPNKSK|TF 0.062 . PF3D7_0808200 299 NKSKTFR|RS 0.119 . PF3D7_0808200 300 KSKTFRR|SF 0.339 . PF3D7_0808200 305 RRSFIEK|NL 0.104 . PF3D7_0808200 329 DTFMLGK|HL 0.061 . PF3D7_0808200 333 LGKHLVR|NQ 0.083 . PF3D7_0808200 348 SESNNNK|NG 0.079 . PF3D7_0808200 385 FFDNLLK|QN 0.062 . PF3D7_0808200 404 ISPYDGK|ST 0.084 . PF3D7_0808200 414 IIGGISK|SF 0.076 . PF3D7_0808200 428 YMLPVLK|ES 0.056 . PF3D7_0808200 435 ESYWEVK|LD 0.064 . PF3D7_0808200 443 DELYIGK|ER 0.054 . PF3D7_0808200 445 LYIGKER|IC 0.093 . PF3D7_0808200 471 MPSSQMK|TF 0.080 . PF3D7_0808200 488 CTEQNYK|DI 0.068 . PF3D7_0808200 492 NYKDILK|SY 0.071 . PF3D7_0808200 498 KSYPIIK|YV 0.102 . PF3D7_0808200 534 IDVPSER|NH 0.080 . PF3D7_0808200 547 GSLSFMR|NF 0.093 . PF3D7_0808200 555 FFTVFVR|GT 0.097 . PF3D7_0808200 560 VRGTESR|PS 0.108 . PF3D7_0808200 568 SMVGVAR|AK 0.133 . PF3D7_0808200 570 VGVARAK|SK 0.079 . PF3D7_0808200 572 VARAKSK|N- 0.076 . ____________________________^_________________
  • Fasta :-

    >PF3D7_0808200 ATGAAACGCATTAGCCCTCTAAACACCCTTTTTTATTTAAGTTTATTTTTTTCATACACA TTTAAAGGGTTAAAATGCACCAGAATATATAAAATCGGAACGAAAGCGTTACCGTGTTCT GAGTGTCACGATGTATTTGATTGTACCGGGTGTTTATTCGAGGAAAAAGAATCTTCTCAT GTGATACCTTTAAAATTAAACAAGAAGAATCCAAACGATCATAAAAAATTACAAAAACAT CATGAGTCTCTAAAATTAGGGGACGTAAAATATTATGTAAACAGAGGAGAAGGAATTTCC GGAAGTTTAGGAACGTCGTCTGGTAATACATTAGATGATATGGATTTAATAAATGAAGAA ATAAATAAAAAACGAACAAATGCACAATTAGATGAAAAAAACTTTTTAGATTTTACTACG TATAATAAAAATAAAGCACAAGATATATCTGACCATTTATCTGATATTCAGAAACATGTG TATGAACAAGATGCTCAAAAGGGAAATAAAAATTTTACAAATAATGAAAACAATTCAGAT AATGAAAACAATTCAGATAATGAAAACAATTCAGATAATGAAAACAATTTAGATAATGAA AACAATTTAGATAATGAAAACAATTCAGATAATAGTTCGATTGAAAAAAATTTTATTGCT TTAGAAAATAAAAACGCTACAGTAGAGCAAACAAAAGAAAATATTTTTCTAGTACCCTTA AAACACTTAAGAGATAGCCAATTTGTAGGAGAATTATTAGTTGGTACCCCCCCTCAAACT GTATATCCAATATTTGATACAGGAAGTACAAATGTATGGGTAGTGACAACAGCTTGTGAA GAAGAGTCTTGTAAAAAAGTCCGAAGATATGATCCTAATAAATCAAAAACATTTAGGAGA TCATTCATAGAAAAAAATTTACACATAGTATTTGGATCCGGTTCTATATCAGGTTCTGTA GGTACAGATACATTTATGTTAGGAAAGCACCTAGTAAGAAATCAGACTTTTGGATTAGTA GAGAGTGAATCAAATAATAATAAAAATGGTGGGGATAATATATTTGATTATATATCCTTT GAAGGTATAGTAGGCTTAGGATTTCCAGGAATGTTATCAGCTGGGAATATACCATTTTTT GATAATTTATTAAAACAAAATCCAAATGTAGATCCTCAATTTTCTTTTTATATATCTCCT TATGATGGGAAGTCAACTTTAATAATTGGTGGGATTAGTAAATCGTTTTATGAGGGCGAT ATATACATGTTGCCAGTATTAAAAGAATCCTACTGGGAAGTAAAATTAGATGAATTATAT ATTGGTAAAGAAAGAATATGTTGTGATGAAGAAAGTTACGTTATATTTGACACAGGTACA TCTTATAATACAATGCCTAGTAGTCAGATGAAAACATTTTTGAATCTAATACATTCAACT GCATGTACTGAACAAAACTATAAAGATATATTAAAATCATATCCTATAATTAAATATGTT TTTGGTGAGCTAATCATTGAATTACATCCAGAAGAATATATGATTTTAAACGATGATGTA TGTATGCCTGCCTACATGCAAATCGATGTACCATCCGAAAGAAACCATGCATATTTATTA GGCAGTTTATCTTTTATGAGGAATTTTTTTACGGTATTTGTACGAGGCACAGAAAGTAGA CCTTCTATGGTTGGAGTAGCAAGAGCAAAAAGTAAAAACTAA
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  • Fasta :-

    MKRISPLNTLFYLSLFFSYTFKGLKCTRIYKIGTKALPCSECHDVFDCTGCLFEEKESSH VIPLKLNKKNPNDHKKLQKHHESLKLGDVKYYVNRGEGISGSLGTSSGNTLDDMDLINEE INKKRTNAQLDEKNFLDFTTYNKNKAQDISDHLSDIQKHVYEQDAQKGNKNFTNNENNSD NENNSDNENNSDNENNLDNENNLDNENNSDNSSIEKNFIALENKNATVEQTKENIFLVPL KHLRDSQFVGELLVGTPPQTVYPIFDTGSTNVWVVTTACEEESCKKVRRYDPNKSKTFRR SFIEKNLHIVFGSGSISGSVGTDTFMLGKHLVRNQTFGLVESESNNNKNGGDNIFDYISF EGIVGLGFPGMLSAGNIPFFDNLLKQNPNVDPQFSFYISPYDGKSTLIIGGISKSFYEGD IYMLPVLKESYWEVKLDELYIGKERICCDEESYVIFDTGTSYNTMPSSQMKTFLNLIHST ACTEQNYKDILKSYPIIKYVFGELIIELHPEEYMILNDDVCMPAYMQIDVPSERNHAYLL GSLSFMRNFFTVFVRGTESRPSMVGVARAKSKN

No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_0808200453 YDEESYVIFD0.991unspPF3D7_0808200453 YDEESYVIFD0.991unspPF3D7_0808200453 YDEESYVIFD0.991unspPF3D7_0808200562 SESRPSMVGV0.992unspPF3D7_08082005 SMKRISPLNT0.991unspPF3D7_0808200399 SSFYISPYDG0.997unsp

PF08_0108      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India