PF3D7_0812200 | trypsin-like serine protease, putative

UniProt_ID: C0H4U2

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0005515 GO:0004252
Computed_GO_Functions: protein binding serine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0006508
Computed_GO_Processes: proteolysis
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PF3D7_0812200	OTHER	0.896915	0.005181	0.097904

No Results

Fasta :-
>PF3D7_0812200 MIKLSICLFYYRTHELWKHRLSFLPKCLLQISTMNAKMYKFDYIKNSVKDYLQKIFLEKF ICLSYCEEINYNKSSNEHMEKKGNVSRQKSLKNTNHELNYSFNIPNNIYNSFVTIHKYNK KNTSSEDTIKVDDLIFLGSGFIYNKNGYILTAAHNIANKEDIFVIKNGDNFFIATIIGLH KESDVCVLKINSKENLSYITLDSIRDDLKQGEVVIAYGQIQKFDKETCSVGIVNHPKQTF SKFENFNGKKQVCLYPFIQISNSINKGMSGSPLVDQHGNLVGMIQKKIDNYGLALPSNVL KNIALLLQNKGTYKEPSLGIIFKEKEFTLKNGSTFKKELKVHNILPKSSAEIAGLKKGDI ILSMNKKIINNICQIHEILNSSSVNPVEIEIMRHNKKQKMKVKY
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0812200.fa Sequence name : PF3D7_0812200 Sequence length : 404 VALUES OF COMPUTED PARAMETERS Coef20 : 4.208 CoefTot : -0.688 ChDiff : 21 ZoneTo : 41 KR : 7 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.524 1.235 -0.103 0.545 MesoH : -0.731 0.293 -0.481 0.226 MuHd_075 : 30.826 19.039 8.708 5.924 MuHd_095 : 30.024 24.963 10.821 6.432 MuHd_100 : 30.771 21.288 9.390 6.459 MuHd_105 : 29.860 20.334 8.445 7.088 Hmax_075 : 16.975 14.000 3.772 5.241 Hmax_095 : 17.325 16.700 2.324 4.930 Hmax_100 : 8.300 13.000 1.395 4.490 Hmax_105 : 7.700 8.750 -0.205 3.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2226 0.7774 DFMC : 0.3231 0.6769 This protein is probably imported in mitochondria. f(Ser) = 0.0732 f(Arg) = 0.0488 CMi = 0.52910 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 404 PF3D7_0812200 MIKLSICLFYYRTHELWKHRLSFLPKCLLQISTMNAKMYKFDYIKNSVKDYLQKIFLEKFICLSYCEEINYNKSSNEHME 80 KKGNVSRQKSLKNTNHELNYSFNIPNNIYNSFVTIHKYNKKNTSSEDTIKVDDLIFLGSGFIYNKNGYILTAAHNIANKE 160 DIFVIKNGDNFFIATIIGLHKESDVCVLKINSKENLSYITLDSIRDDLKQGEVVIAYGQIQKFDKETCSVGIVNHPKQTF 240 SKFENFNGKKQVCLYPFIQISNSINKGMSGSPLVDQHGNLVGMIQKKIDNYGLALPSNVLKNIALLLQNKGTYKEPSLGI 320 IFKEKEFTLKNGSTFKKELKVHNILPKSSAEIAGLKKGDIILSMNKKIINNICQIHEILNSSSVNPVEIEIMRHNKKQKM 400 KVKY 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0812200 3 ----MIK|LS 0.055 . PF3D7_0812200 12 ICLFYYR|TH 0.070 . PF3D7_0812200 18 RTHELWK|HR 0.060 . PF3D7_0812200 20 HELWKHR|LS 0.072 . PF3D7_0812200 26 RLSFLPK|CL 0.089 . PF3D7_0812200 37 ISTMNAK|MY 0.057 . PF3D7_0812200 40 MNAKMYK|FD 0.078 . PF3D7_0812200 45 YKFDYIK|NS 0.056 . PF3D7_0812200 49 YIKNSVK|DY 0.074 . PF3D7_0812200 54 VKDYLQK|IF 0.059 . PF3D7_0812200 59 QKIFLEK|FI 0.070 . PF3D7_0812200 73 EEINYNK|SS 0.068 . PF3D7_0812200 81 SNEHMEK|KG 0.062 . PF3D7_0812200 82 NEHMEKK|GN 0.111 . PF3D7_0812200 87 KKGNVSR|QK 0.105 . PF3D7_0812200 89 GNVSRQK|SL 0.086 . PF3D7_0812200 92 SRQKSLK|NT 0.090 . PF3D7_0812200 117 SFVTIHK|YN 0.063 . PF3D7_0812200 120 TIHKYNK|KN 0.078 . PF3D7_0812200 121 IHKYNKK|NT 0.110 . PF3D7_0812200 130 SSEDTIK|VD 0.065 . PF3D7_0812200 145 SGFIYNK|NG 0.056 . PF3D7_0812200 159 AHNIANK|ED 0.063 . PF3D7_0812200 166 EDIFVIK|NG 0.064 . PF3D7_0812200 181 TIIGLHK|ES 0.062 . PF3D7_0812200 189 SDVCVLK|IN 0.067 . PF3D7_0812200 193 VLKINSK|EN 0.055 . PF3D7_0812200 205 ITLDSIR|DD 0.098 . PF3D7_0812200 209 SIRDDLK|QG 0.068 . PF3D7_0812200 222 AYGQIQK|FD 0.055 . PF3D7_0812200 225 QIQKFDK|ET 0.076 . PF3D7_0812200 237 GIVNHPK|QT 0.088 . PF3D7_0812200 242 PKQTFSK|FE 0.068 . PF3D7_0812200 249 FENFNGK|KQ 0.059 . PF3D7_0812200 250 ENFNGKK|QV 0.112 . PF3D7_0812200 266 ISNSINK|GM 0.073 . PF3D7_0812200 286 LVGMIQK|KI 0.066 . PF3D7_0812200 287 VGMIQKK|ID 0.106 . PF3D7_0812200 301 LPSNVLK|NI 0.072 . PF3D7_0812200 310 ALLLQNK|GT 0.064 . PF3D7_0812200 314 QNKGTYK|EP 0.064 . PF3D7_0812200 323 SLGIIFK|EK 0.072 . PF3D7_0812200 325 GIIFKEK|EF 0.066 . PF3D7_0812200 330 EKEFTLK|NG 0.063 . PF3D7_0812200 336 KNGSTFK|KE 0.061 . PF3D7_0812200 337 NGSTFKK|EL 0.113 . PF3D7_0812200 340 TFKKELK|VH 0.061 . PF3D7_0812200 347 VHNILPK|SS 0.085 . PF3D7_0812200 356 AEIAGLK|KG 0.062 . PF3D7_0812200 357 EIAGLKK|GD 0.081 . PF3D7_0812200 366 IILSMNK|KI 0.059 . PF3D7_0812200 367 ILSMNKK|II 0.126 . PF3D7_0812200 393 VEIEIMR|HN 0.085 . PF3D7_0812200 396 EIMRHNK|KQ 0.128 . PF3D7_0812200 397 IMRHNKK|QK 0.120 . PF3D7_0812200 399 RHNKKQK|MK 0.084 . PF3D7_0812200 401 NKKQKMK|VK 0.074 . PF3D7_0812200 403 KQKMKVK|Y- 0.085 . ____________________________^_________________

Fasta :-
>PF3D7_0812200 ATGATAAAATTGTCCATATGTTTATTTTATTATAGAACACATGAGCTGTGGAAACACAGA CTGAGTTTTTTACCAAAGTGTCTTCTTCAAATATCCACTATGAATGCTAAAATGTATAAA TTTGATTATATTAAAAATAGTGTAAAGGATTATTTACAGAAGATATTCTTAGAAAAGTTT ATATGTTTATCCTACTGCGAAGAGATAAATTATAACAAATCATCCAATGAACATATGGAA AAAAAGGGAAATGTATCTAGACAAAAATCTTTGAAAAACACAAATCATGAATTAAATTAT TCATTTAATATACCAAATAATATATATAACAGCTTTGTTACTATTCATAAATATAATAAA AAGAACACATCATCTGAAGATACTATTAAAGTAGATGACTTAATATTCTTGGGATCTGGA TTTATTTACAACAAAAATGGATACATTTTGACAGCTGCACATAACATTGCGAACAAGGAA GACATATTTGTTATAAAAAATGGAGATAATTTTTTTATAGCTACAATAATAGGGTTGCAT AAAGAATCAGATGTTTGTGTTTTGAAAATTAATTCAAAGGAAAACCTTTCATATATAACT TTAGATTCTATAAGAGATGATTTAAAACAAGGAGAAGTAGTTATTGCATATGGACAAATT CAAAAATTTGACAAAGAAACATGCAGTGTTGGTATAGTAAATCACCCAAAGCAAACATTT TCTAAATTTGAAAATTTTAATGGAAAAAAACAAGTATGTTTGTATCCATTTATTCAAATT AGCAATTCTATAAATAAAGGTATGTCCGGTTCACCACTCGTCGATCAACATGGCAATCTT GTGGGCATGATACAAAAAAAAATTGATAATTATGGATTGGCTTTGCCTTCTAATGTTTTA AAAAACATAGCATTATTATTGCAAAACAAGGGAACTTATAAAGAACCATCATTAGGAATA ATATTTAAAGAAAAAGAATTCACTCTTAAAAACGGTTCCACCTTCAAAAAAGAGTTAAAA GTTCATAACATTCTGCCTAAATCATCTGCTGAAATTGCTGGTTTAAAAAAAGGAGATATT ATTTTAAGCATGAATAAAAAGATTATAAATAATATTTGTCAGATTCATGAAATCTTAAAT AGTTCTTCGGTTAATCCCGTAGAAATTGAAATAATGCGTCATAATAAAAAACAAAAAATG AAGGTCAAATATTGA
Download Fasta

Fasta :-

MIKLSICLFYYRTHELWKHRLSFLPKCLLQISTMNAKMYKFDYIKNSVKDYLQKIFLEKF ICLSYCEEINYNKSSNEHMEKKGNVSRQKSLKNTNHELNYSFNIPNNIYNSFVTIHKYNK KNTSSEDTIKVDDLIFLGSGFIYNKNGYILTAAHNIANKEDIFVIKNGDNFFIATIIGLH KESDVCVLKINSKENLSYITLDSIRDDLKQGEVVIAYGQIQKFDKETCSVGIVNHPKQTF SKFENFNGKKQVCLYPFIQISNSINKGMSGSPLVDQHGNLVGMIQKKIDNYGLALPSNVL KNIALLLQNKGTYKEPSLGIIFKEKEFTLKNGSTFKKELKVHNILPKSSAEIAGLKKGDI ILSMNKKIINNICQIHEILNSSSVNPVEIEIMRHNKKQKMKVKY

Prokaryotic proteases

title: protein binding site
coordinates: S317,L318,G319,I320,F322,N371,I372,I375,H376

PF3D7_0812200.pdb

PF3D7_0812200_site1.pdb

PF3D7_0812200_site2.pdb

PF3D7_0812200_site3.pdb

PF3D7_0812200_site4.pdb

PF3D7_0812200_site5.pdb

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	PF3D7_0812200	124 S	KKNTSSEDT	0.997	unsp	PF3D7_0812200	124 S	KKNTSSEDT	0.997	unsp	PF3D7_0812200	124 S	KKNTSSEDT	0.997	unsp	PF3D7_0812200	47 S	YIKNSVKDY	0.997	unsp	PF3D7_0812200	90 S	SRQKSLKNT	0.996	unsp

PF3D7_0812200 | trypsin-like serine protease, putative

ID's

UniProt_ID: C0H4U2

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0005515 GO:0004252

Computed_GO_Functions: protein binding serine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0006508

Computed_GO_Processes: proteolysis

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Prokaryotic proteases

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

MAL8P1.98 MAL8P1.99

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India