PF3D7_0828000 | rhomboid protease ROM3

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0828000OTHER0.9999980.0000010.000001
No Results

  • Fasta :-

    >PF3D7_0828000 MLRKDIESDEDGVVSSENIKLLERQTKNKYVDILFPGIELNKIIVWISFFQIIIYILSCL LSENLSTPNVHILILLGATYGPLIKEGQYWRLVLPIFLHANLWHLIINILCILNLGLIIE SKYKKSKFLLIYFLSGATGNILTTICNPCQLAVGASTSGFGLIGCSIFEIFLAWKNLTRK AKNYYILNIFLFLLFFMFVSFSPSVDLFGHIGGFLCGAFLCCHYNKFIGYNIFQKFLYYS FFFICSLIIIYLPVRLYIINMPCGMIY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0828000.fa Sequence name : PF3D7_0828000 Sequence length : 267 VALUES OF COMPUTED PARAMETERS Coef20 : 3.320 CoefTot : 0.144 ChDiff : 6 ZoneTo : 4 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.582 2.471 0.463 0.908 MesoH : 1.174 1.401 0.109 0.599 MuHd_075 : 16.690 8.020 4.404 3.839 MuHd_095 : 19.463 15.191 4.861 5.296 MuHd_100 : 26.832 15.625 7.429 5.178 MuHd_105 : 26.224 13.055 7.930 4.124 Hmax_075 : -8.983 3.267 -3.542 1.540 Hmax_095 : -11.800 2.712 -4.126 1.347 Hmax_100 : -8.000 5.200 -2.250 2.100 Hmax_105 : 1.050 9.100 0.062 3.500 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9276 0.0724 DFMC : 0.9376 0.0624
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 267 PF3D7_0828000 MLRKDIESDEDGVVSSENIKLLERQTKNKYVDILFPGIELNKIIVWISFFQIIIYILSCLLSENLSTPNVHILILLGATY 80 GPLIKEGQYWRLVLPIFLHANLWHLIINILCILNLGLIIESKYKKSKFLLIYFLSGATGNILTTICNPCQLAVGASTSGF 160 GLIGCSIFEIFLAWKNLTRKAKNYYILNIFLFLLFFMFVSFSPSVDLFGHIGGFLCGAFLCCHYNKFIGYNIFQKFLYYS 240 FFFICSLIIIYLPVRLYIINMPCGMIY 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0828000 3 ----MLR|KD 0.077 . PF3D7_0828000 4 ---MLRK|DI 0.132 . PF3D7_0828000 20 VSSENIK|LL 0.071 . PF3D7_0828000 24 NIKLLER|QT 0.075 . PF3D7_0828000 27 LLERQTK|NK 0.115 . PF3D7_0828000 29 ERQTKNK|YV 0.136 . PF3D7_0828000 42 PGIELNK|II 0.056 . PF3D7_0828000 85 TYGPLIK|EG 0.055 . PF3D7_0828000 91 KEGQYWR|LV 0.110 . PF3D7_0828000 122 GLIIESK|YK 0.062 . PF3D7_0828000 124 IIESKYK|KS 0.058 . PF3D7_0828000 125 IESKYKK|SK 0.145 . PF3D7_0828000 127 SKYKKSK|FL 0.083 . PF3D7_0828000 175 EIFLAWK|NL 0.059 . PF3D7_0828000 179 AWKNLTR|KA 0.080 . PF3D7_0828000 180 WKNLTRK|AK 0.084 . PF3D7_0828000 182 NLTRKAK|NY 0.130 . PF3D7_0828000 226 LCCHYNK|FI 0.100 . PF3D7_0828000 235 GYNIFQK|FL 0.076 . PF3D7_0828000 255 IIYLPVR|LY 0.078 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0828000 ATGTTAAGAAAAGATATTGAAAGTGATGAAGATGGTGTTGTATCATCTGAAAATATTAAG CTCCTTGAAAGACAGACAAAAAATAAATACGTCGATATTTTATTTCCTGGGATAGAATTA AATAAAATTATTGTATGGATAAGTTTTTTTCAAATAATTATTTATATTTTAAGTTGTTTA TTAAGTGAAAACTTGAGCACACCAAATGTTCATATTTTGATCTTACTCGGGGCAACTTAT GGTCCTTTAATTAAGGAAGGGCAATATTGGAGACTTGTGCTACCGATTTTCTTACATGCC AATTTATGGCATTTGATTATAAATATTTTGTGTATCCTAAATTTAGGTTTAATAATTGAA AGTAAATATAAGAAGTCAAAATTCTTATTAATATATTTTTTATCTGGAGCAACAGGAAAT ATTCTCACAACTATTTGTAATCCTTGTCAGCTAGCTGTAGGAGCATCAACTAGTGGGTTT GGATTAATTGGCTGTTCAATATTTGAAATATTTTTAGCTTGGAAGAATTTAACAAGAAAG GCTAAGAATTATTATATTCTTAATATTTTTTTATTTCTATTATTTTTTATGTTTGTTAGC TTCTCTCCTTCAGTTGATCTTTTTGGTCATATAGGTGGATTCCTTTGTGGAGCCTTTTTA TGTTGTCATTATAATAAATTCATAGGATACAATATTTTTCAAAAGTTTCTATATTATAGC TTTTTTTTTATTTGCTCATTAATTATTATTTACTTGCCTGTAAGATTATACATTATTAAT ATGCCATGTGGAATGATCTATTAA
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  • Fasta :-

    MLRKDIESDEDGVVSSENIKLLERQTKNKYVDILFPGIELNKIIVWISFFQIIIYILSCL LSENLSTPNVHILILLGATYGPLIKEGQYWRLVLPIFLHANLWHLIINILCILNLGLIIE SKYKKSKFLLIYFLSGATGNILTTICNPCQLAVGASTSGFGLIGCSIFEIFLAWKNLTRK AKNYYILNIFLFLLFFMFVSFSPSVDLFGHIGGFLCGAFLCCHYNKFIGYNIFQKFLYYS FFFICSLIIIYLPVRLYIINMPCGMIY

No Results
No Results
IDSitePeptideScoreMethod
PF3D7_08280008 SKDIESDEDG0.998unsp

MAL8P1.16      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India