PF3D7_0904400 | signal peptidase complex subunit 3, putative

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  • Fasta :-

    >PF3D7_0904400 MDSFLNRLNVLFYSMALCFLILCAFNYGTSFYLFDEKEIKTNIQVKSIKRFVYNRYINAD EAVLSLDVSYDMRKAFNWNLKQLFVYVLVTYETPKKIKNEVIIQDYIVKNKKQAKKNYRN FITKYSLKDYYNGLRNNLIHLQVCYKYMPIVGFSRSFEGAKISYQLPPEYFDNLPSNYPL YYPDK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0904400.fa Sequence name : PF3D7_0904400 Sequence length : 185 VALUES OF COMPUTED PARAMETERS Coef20 : 4.680 CoefTot : 0.246 ChDiff : 10 ZoneTo : 34 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.982 2.247 0.438 0.721 MesoH : -0.950 0.322 -0.457 0.169 MuHd_075 : 22.540 12.232 5.024 4.064 MuHd_095 : 25.509 16.467 5.224 6.006 MuHd_100 : 25.625 18.353 6.837 5.707 MuHd_105 : 23.856 19.476 7.198 4.758 Hmax_075 : 14.900 23.917 3.401 7.160 Hmax_095 : 21.700 19.700 2.930 7.140 Hmax_100 : 22.900 21.700 4.469 7.540 Hmax_105 : 5.600 11.800 1.332 3.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9008 0.0992 DFMC : 0.8353 0.1647
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 185 PF3D7_0904400 MDSFLNRLNVLFYSMALCFLILCAFNYGTSFYLFDEKEIKTNIQVKSIKRFVYNRYINADEAVLSLDVSYDMRKAFNWNL 80 KQLFVYVLVTYETPKKIKNEVIIQDYIVKNKKQAKKNYRNFITKYSLKDYYNGLRNNLIHLQVCYKYMPIVGFSRSFEGA 160 KISYQLPPEYFDNLPSNYPLYYPDK 240 ................................................................................ 80 ................................................................................ 160 ......................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0904400 7 MDSFLNR|LN 0.083 . PF3D7_0904400 37 FYLFDEK|EI 0.058 . PF3D7_0904400 40 FDEKEIK|TN 0.064 . PF3D7_0904400 46 KTNIQVK|SI 0.092 . PF3D7_0904400 49 IQVKSIK|RF 0.058 . PF3D7_0904400 50 QVKSIKR|FV 0.185 . PF3D7_0904400 55 KRFVYNR|YI 0.146 . PF3D7_0904400 73 DVSYDMR|KA 0.092 . PF3D7_0904400 74 VSYDMRK|AF 0.090 . PF3D7_0904400 81 AFNWNLK|QL 0.070 . PF3D7_0904400 95 VTYETPK|KI 0.063 . PF3D7_0904400 96 TYETPKK|IK 0.095 . PF3D7_0904400 98 ETPKKIK|NE 0.062 . PF3D7_0904400 109 IQDYIVK|NK 0.060 . PF3D7_0904400 111 DYIVKNK|KQ 0.058 . PF3D7_0904400 112 YIVKNKK|QA 0.117 . PF3D7_0904400 115 KNKKQAK|KN 0.079 . PF3D7_0904400 116 NKKQAKK|NY 0.096 . PF3D7_0904400 119 QAKKNYR|NF 0.093 . PF3D7_0904400 124 YRNFITK|YS 0.071 . PF3D7_0904400 128 ITKYSLK|DY 0.079 . PF3D7_0904400 135 DYYNGLR|NN 0.072 . PF3D7_0904400 146 HLQVCYK|YM 0.072 . PF3D7_0904400 155 PIVGFSR|SF 0.136 . PF3D7_0904400 161 RSFEGAK|IS 0.067 . PF3D7_0904400 185 PLYYPDK|-- 0.067 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0904400 ATGGATAGCTTCTTAAACCGCTTAAATGTGTTGTTTTATTCTATGGCCCTGTGTTTTTTA ATATTGTGTGCGTTCAATTATGGAACATCTTTTTATTTATTTGATGAGAAAGAAATAAAA ACCAATATTCAGGTGAAAAGTATTAAAAGATTTGTATATAATAGGTACATAAATGCTGAT GAAGCAGTATTATCTTTAGATGTTTCTTATGATATGAGAAAAGCATTTAATTGGAATTTA AAACAGCTTTTTGTTTATGTTTTAGTTACATATGAAACGCCTAAAAAAATAAAGAATGAA GTTATAATTCAAGATTATATTGTTAAAAATAAAAAGCAAGCCAAAAAAAATTATAGAAAT TTTATTACAAAATATTCACTTAAAGATTATTATAACGGACTAAGAAATAATTTAATTCAT TTACAAGTTTGTTATAAATATATGCCTATTGTGGGTTTTTCAAGATCTTTTGAAGGTGCC AAAATTTCTTATCAATTGCCCCCTGAATATTTTGATAACTTGCCTTCGAATTACCCCTTA TATTATCCAGACAAATAA
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  • Fasta :-

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IDSitePeptideScoreMethod
PF3D7_0904400126 SITKYSLKDY0.993unsp

PFI0215c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India