PF3D7_1133400 | apical membrane antigen 1

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  • Fasta :-

    >PF3D7_1133400 MRKLYCVLLLSAFEFTYMINFGRGQNYWEHPYQNSDVYRPINEHREHPKEYEYPLHQEHT YQQEDSGEDENTLQHAYPIDHEGAEPAPQEQNLFSSIEIVERSNYMGNPWTEYMAKYDIE EVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATGNQYLKDGG FAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVY DDKDKKCHILYIAAQENNGPRYCNKDESKRNSMFCFRPAKDISFQNYTYLSKNVVDNWEK VCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDY EKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLI NNSSYIATTALSHPIEVENNFPCSLYKDEIMKEIERESKRIKLNDNDDEGNKKIIAPRIF ISDDKDSLKCPCDPEMVSNSTCRFFVCKCVERRAEVTSNNEVVVKEEYKDEYADIPEHKP TYDKMKIIIASSAAVAVLATILMVYLYKRKGNAEKYDKMDEPQDYGKSNSRNDEMLDPEA SFWGEEKRASHTTPVLMEKPYY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1133400.fa Sequence name : PF3D7_1133400 Sequence length : 622 VALUES OF COMPUTED PARAMETERS Coef20 : 4.549 CoefTot : -0.729 ChDiff : -22 ZoneTo : 28 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.176 2.506 0.454 0.784 MesoH : -0.648 0.053 -0.419 0.159 MuHd_075 : 16.319 11.953 4.312 5.437 MuHd_095 : 25.516 14.023 5.722 5.329 MuHd_100 : 23.001 12.988 5.118 4.942 MuHd_105 : 20.897 11.077 5.913 3.823 Hmax_075 : 14.700 17.100 2.444 5.800 Hmax_095 : 16.100 16.975 3.001 5.630 Hmax_100 : 19.300 20.200 3.382 6.360 Hmax_105 : 16.217 17.967 3.731 6.627 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9830 0.0170 DFMC : 0.9864 0.0136
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 622 PF3D7_1133400 MRKLYCVLLLSAFEFTYMINFGRGQNYWEHPYQNSDVYRPINEHREHPKEYEYPLHQEHTYQQEDSGEDENTLQHAYPID 80 HEGAEPAPQEQNLFSSIEIVERSNYMGNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIEN 160 SNTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVY 240 DDKDKKCHILYIAAQENNGPRYCNKDESKRNSMFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNC 320 EDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWG 400 NYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVENNFPCSLYKDEIMKEIERESKRIKLNDNDDEGNKKIIAPRIF 480 ISDDKDSLKCPCDPEMVSNSTCRFFVCKCVERRAEVTSNNEVVVKEEYKDEYADIPEHKPTYDKMKIIIASSAAVAVLAT 560 ILMVYLYKRKGNAEKYDKMDEPQDYGKSNSRNDEMLDPEASFWGEEKRASHTTPVLMEKPYY 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .............................................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1133400 2 -----MR|KL 0.095 . PF3D7_1133400 3 ----MRK|LY 0.080 . PF3D7_1133400 23 YMINFGR|GQ 0.097 . PF3D7_1133400 39 QNSDVYR|PI 0.171 . PF3D7_1133400 45 RPINEHR|EH 0.090 . PF3D7_1133400 49 EHREHPK|EY 0.087 . PF3D7_1133400 102 SIEIVER|SN 0.141 . PF3D7_1133400 116 WTEYMAK|YD 0.076 . PF3D7_1133400 128 VHGSGIR|VD 0.065 . PF3D7_1133400 143 VAGTQYR|LP 0.091 . PF3D7_1133400 148 YRLPSGK|CP 0.063 . PF3D7_1133400 154 KCPVFGK|GI 0.077 . PF3D7_1133400 177 TGNQYLK|DG 0.087 . PF3D7_1133400 199 MTLDEMR|HF 0.088 . PF3D7_1133400 203 EMRHFYK|DN 0.077 . PF3D7_1133400 206 HFYKDNK|YV 0.070 . PF3D7_1133400 209 KDNKYVK|NL 0.069 . PF3D7_1133400 219 ELTLCSR|HA 0.096 . PF3D7_1133400 230 MIPDNDK|NS 0.058 . PF3D7_1133400 235 DKNSNYK|YP 0.066 . PF3D7_1133400 243 PAVYDDK|DK 0.062 . PF3D7_1133400 245 VYDDKDK|KC 0.059 . PF3D7_1133400 246 YDDKDKK|CH 0.080 . PF3D7_1133400 261 QENNGPR|YC 0.109 . PF3D7_1133400 265 GPRYCNK|DE 0.099 . PF3D7_1133400 269 CNKDESK|RN 0.059 . PF3D7_1133400 270 NKDESKR|NS 0.137 . PF3D7_1133400 277 NSMFCFR|PA 0.115 . PF3D7_1133400 280 FCFRPAK|DI 0.223 . PF3D7_1133400 292 NYTYLSK|NV 0.059 . PF3D7_1133400 300 VVDNWEK|VC 0.053 . PF3D7_1133400 304 WEKVCPR|KN 0.083 . PF3D7_1133400 305 EKVCPRK|NL 0.087 . PF3D7_1133400 311 KNLQNAK|FG 0.066 . PF3D7_1133400 339 DLFECNK|LV 0.062 . PF3D7_1133400 351 SASDQPK|QY 0.125 . PF3D7_1133400 362 HLTDYEK|IK 0.059 . PF3D7_1133400 364 TDYEKIK|EG 0.075 . PF3D7_1133400 368 KIKEGFK|NK 0.057 . PF3D7_1133400 370 KEGFKNK|NA 0.088 . PF3D7_1133400 376 KNASMIK|SA 0.085 . PF3D7_1133400 386 LPTGAFK|AD 0.063 . PF3D7_1133400 389 GAFKADR|YK 0.121 . PF3D7_1133400 391 FKADRYK|SH 0.127 . PF3D7_1133400 395 RYKSHGK|GY 0.075 . PF3D7_1133400 408 YNTETQK|CE 0.055 . PF3D7_1133400 415 CEIFNVK|PT 0.066 . PF3D7_1133400 447 FPCSLYK|DE 0.071 . PF3D7_1133400 452 YKDEIMK|EI 0.065 . PF3D7_1133400 456 IMKEIER|ES 0.067 . PF3D7_1133400 459 EIERESK|RI 0.088 . PF3D7_1133400 460 IERESKR|IK 0.153 . PF3D7_1133400 462 RESKRIK|LN 0.071 . PF3D7_1133400 472 NDDEGNK|KI 0.056 . PF3D7_1133400 473 DDEGNKK|II 0.092 . PF3D7_1133400 478 KKIIAPR|IF 0.090 . PF3D7_1133400 485 IFISDDK|DS 0.063 . PF3D7_1133400 489 DDKDSLK|CP 0.064 . PF3D7_1133400 503 VSNSTCR|FF 0.100 . PF3D7_1133400 508 CRFFVCK|CV 0.089 . PF3D7_1133400 512 VCKCVER|RA 0.088 . PF3D7_1133400 513 CKCVERR|AE 0.134 . PF3D7_1133400 525 NNEVVVK|EE 0.067 . PF3D7_1133400 529 VVKEEYK|DE 0.069 . PF3D7_1133400 539 ADIPEHK|PT 0.078 . PF3D7_1133400 544 HKPTYDK|MK 0.061 . PF3D7_1133400 546 PTYDKMK|II 0.082 . PF3D7_1133400 568 LMVYLYK|RK 0.070 . PF3D7_1133400 569 MVYLYKR|KG 0.121 . PF3D7_1133400 570 VYLYKRK|GN 0.077 . PF3D7_1133400 575 RKGNAEK|YD 0.074 . PF3D7_1133400 578 NAEKYDK|MD 0.065 . PF3D7_1133400 587 EPQDYGK|SN 0.093 . PF3D7_1133400 591 YGKSNSR|ND 0.075 . PF3D7_1133400 607 SFWGEEK|RA 0.070 . PF3D7_1133400 608 FWGEEKR|AS 0.214 . PF3D7_1133400 619 TPVLMEK|PY 0.069 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1133400 ATGAGAAAATTATACTGCGTATTATTATTGAGCGCCTTTGAGTTTACATATATGATAAAC TTTGGAAGAGGACAGAATTATTGGGAACATCCATATCAAAATAGTGATGTGTATCGTCCA ATCAACGAACATAGGGAACATCCAAAAGAATACGAATATCCATTACACCAGGAACATACA TACCAACAAGAAGATTCAGGAGAAGACGAAAATACATTACAACACGCATATCCAATAGAC CACGAAGGTGCCGAACCCGCACCACAAGAACAAAATTTATTTTCAAGCATTGAAATAGTA GAAAGAAGTAATTATATGGGTAATCCATGGACGGAATATATGGCAAAATATGATATTGAA GAAGTTCATGGTTCAGGTATAAGAGTAGATTTAGGAGAAGATGCTGAAGTAGCTGGAACT CAATATAGACTTCCATCAGGGAAATGTCCAGTATTTGGTAAAGGTATAATTATTGAGAAT TCAAATACTACTTTTTTAACACCGGTAGCTACGGGAAATCAATATTTAAAAGATGGAGGT TTTGCTTTTCCTCCAACAGAACCTCTTATGTCACCAATGACATTAGATGAAATGAGACAT TTTTATAAAGATAATAAATATGTAAAAAATTTAGATGAATTGACTTTATGTTCAAGACAT GCAGGAAATATGATTCCAGATAATGATAAAAATTCAAATTATAAATATCCAGCTGTTTAT GATGACAAAGATAAAAAGTGTCATATATTATATATTGCAGCTCAAGAAAATAATGGTCCT AGATATTGTAATAAAGACGAAAGTAAAAGAAACAGCATGTTTTGTTTTAGACCAGCAAAA GATATATCATTTCAAAACTATACATATTTAAGTAAGAATGTAGTTGATAACTGGGAAAAA GTTTGCCCTAGAAAGAATTTACAGAATGCAAAATTCGGATTATGGGTCGATGGAAATTGT GAAGATATACCACATGTAAATGAATTTCCAGCAATTGATCTTTTTGAATGTAATAAATTA GTTTTTGAATTGAGTGCTTCGGATCAACCTAAACAATATGAACAACATTTAACAGATTAT GAAAAAATTAAAGAAGGTTTCAAAAATAAGAACGCTAGTATGATCAAAAGTGCTTTTCTT CCCACTGGTGCTTTTAAAGCAGATAGATATAAAAGTCATGGTAAGGGTTATAATTGGGGA AATTATAACACAGAAACACAAAAATGTGAAATTTTTAATGTCAAACCAACATGTTTAATT AACAATTCATCATACATTGCTACTACTGCTTTGTCCCATCCCATCGAAGTTGAAAACAAT TTTCCATGTTCATTATATAAAGATGAAATAATGAAAGAAATCGAAAGAGAATCAAAACGA ATTAAATTAAATGATAATGATGATGAAGGGAATAAAAAAATTATAGCTCCAAGAATTTTT ATTTCAGATGATAAAGACAGTTTAAAATGCCCATGTGACCCTGAAATGGTAAGTAATAGT ACATGTCGTTTCTTTGTATGTAAATGTGTAGAAAGAAGGGCAGAAGTAACATCAAATAAT GAAGTTGTAGTTAAAGAAGAATATAAAGATGAATATGCAGATATTCCTGAACATAAACCA ACTTATGATAAAATGAAAATTATAATTGCATCATCAGCTGCTGTCGCTGTATTAGCAACT ATTTTAATGGTTTATCTTTATAAAAGAAAAGGAAATGCTGAAAAATATGATAAAATGGAT GAACCACAAGATTATGGGAAATCAAATTCAAGAAATGATGAAATGTTAGATCCTGAGGCA TCTTTTTGGGGGGAAGAAAAAAGAGCATCACATACAACACCAGTTCTGATGGAAAAACCA TACTATTAA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_1133400392 SDRYKSHGKG0.993unspPF3D7_1133400392 SDRYKSHGKG0.993unspPF3D7_1133400392 SDRYKSHGKG0.993unspPF3D7_1133400487 SDDKDSLKCP0.994unspPF3D7_1133400532 YYKDEYADIP0.992unspPF3D7_1133400610 SEKRASHTTP0.992unspPF3D7_113340066 SQQEDSGEDE0.995unspPF3D7_1133400146 SYRLPSGKCP0.993unsp

PF11_0344      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India