PF3D7_1248900 | 26S protease regulatory subunit 8, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1248900OTHER0.9999000.0000230.000077
No Results

  • Fasta :-

    >PF3D7_1248900 MAAVDFDVRSKNLSEGIKNEISEKNMENNNNNDNNKNSSALNEEQVQSGIKRYYELKIEE YESIINKKLQNKKRLEAQRNELNARVRELCDEIQYLLEAASYVGEIVKPMGKNKVLVKIN PEGKYVVDIARHINISHCTPNTRVALYNDSYKLHKILPSKVDPLVSLMKVEKVPDSTYEM VGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTDCT FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEHGDSEVQR TMMELLNQLDGFESTQNIKVIMCTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKI HSRKMNLMRGIDMLKIATDMNNCSGAEVKAVCTEAGMFALRERRVHVTQEDFEMAVAKVM KQDAEKNFTLRKLWK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1248900.fa Sequence name : PF3D7_1248900 Sequence length : 435 VALUES OF COMPUTED PARAMETERS Coef20 : 3.657 CoefTot : 0.282 ChDiff : -2 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.335 0.788 -0.063 0.398 MesoH : -0.765 0.175 -0.411 0.158 MuHd_075 : 12.406 13.567 3.551 4.140 MuHd_095 : 17.549 11.370 5.547 3.088 MuHd_100 : 23.304 11.870 7.405 3.799 MuHd_105 : 29.374 14.691 9.153 4.907 Hmax_075 : -0.900 11.100 -1.442 3.160 Hmax_095 : 4.550 8.050 -0.594 2.695 Hmax_100 : 14.000 13.100 2.317 4.580 Hmax_105 : 14.933 13.650 2.717 5.390 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8667 0.1333 DFMC : 0.8721 0.1279
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 435 PF3D7_1248900 MAAVDFDVRSKNLSEGIKNEISEKNMENNNNNDNNKNSSALNEEQVQSGIKRYYELKIEEYESIINKKLQNKKRLEAQRN 80 ELNARVRELCDEIQYLLEAASYVGEIVKPMGKNKVLVKINPEGKYVVDIARHINISHCTPNTRVALYNDSYKLHKILPSK 160 VDPLVSLMKVEKVPDSTYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTDCT 240 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEHGDSEVQRTMMELLNQLDGFESTQNIKV 320 IMCTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGIDMLKIATDMNNCSGAEVKAVCTEAGMFAL 400 RERRVHVTQEDFEMAVAKVMKQDAEKNFTLRKLWK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1248900 9 AVDFDVR|SK 0.095 . PF3D7_1248900 11 DFDVRSK|NL 0.071 . PF3D7_1248900 18 NLSEGIK|NE 0.064 . PF3D7_1248900 24 KNEISEK|NM 0.062 . PF3D7_1248900 36 NNNDNNK|NS 0.070 . PF3D7_1248900 51 QVQSGIK|RY 0.055 . PF3D7_1248900 52 VQSGIKR|YY 0.262 . PF3D7_1248900 57 KRYYELK|IE 0.062 . PF3D7_1248900 67 YESIINK|KL 0.064 . PF3D7_1248900 68 ESIINKK|LQ 0.096 . PF3D7_1248900 72 NKKLQNK|KR 0.061 . PF3D7_1248900 73 KKLQNKK|RL 0.114 . PF3D7_1248900 74 KLQNKKR|LE 0.171 . PF3D7_1248900 79 KRLEAQR|NE 0.080 . PF3D7_1248900 85 RNELNAR|VR 0.078 . PF3D7_1248900 87 ELNARVR|EL 0.118 . PF3D7_1248900 108 YVGEIVK|PM 0.063 . PF3D7_1248900 112 IVKPMGK|NK 0.053 . PF3D7_1248900 114 KPMGKNK|VL 0.076 . PF3D7_1248900 118 KNKVLVK|IN 0.064 . PF3D7_1248900 124 KINPEGK|YV 0.100 . PF3D7_1248900 131 YVVDIAR|HI 0.103 . PF3D7_1248900 143 HCTPNTR|VA 0.072 . PF3D7_1248900 152 LYNDSYK|LH 0.058 . PF3D7_1248900 155 DSYKLHK|IL 0.062 . PF3D7_1248900 160 HKILPSK|VD 0.057 . PF3D7_1248900 169 PLVSLMK|VE 0.054 . PF3D7_1248900 172 SLMKVEK|VP 0.064 . PF3D7_1248900 189 GLDQQVK|EV 0.083 . PF3D7_1248900 192 QQVKEVK|EV 0.072 . PF3D7_1248900 200 VIELPVK|HP 0.060 . PF3D7_1248900 214 LGISQPK|GV 0.082 . PF3D7_1248900 226 GPPGTGK|TL 0.059 . PF3D7_1248900 231 GKTLLAR|AV 0.134 . PF3D7_1248900 243 TDCTFIR|VS 0.131 . PF3D7_1248900 252 GSELVQK|YI 0.105 . PF3D7_1248900 259 YIGEGSR|MV 0.115 . PF3D7_1248900 262 EGSRMVR|EL 0.260 . PF3D7_1248900 269 ELFVMAR|EH 0.090 . PF3D7_1248900 288 DSIGSQR|IE 0.114 . PF3D7_1248900 300 GDSEVQR|TM 0.152 . PF3D7_1248900 319 ESTQNIK|VI 0.055 . PF3D7_1248900 326 VIMCTNR|ID 0.079 . PF3D7_1248900 336 LDEALLR|PG 0.072 . PF3D7_1248900 339 ALLRPGR|ID 0.204 . PF3D7_1248900 342 RPGRIDR|KI 0.277 . PF3D7_1248900 343 PGRIDRK|IE 0.075 . PF3D7_1248900 354 NPNVEAR|ME 0.139 . PF3D7_1248900 359 ARMEILK|IH 0.070 . PF3D7_1248900 363 ILKIHSR|KM 0.075 . PF3D7_1248900 364 LKIHSRK|MN 0.101 . PF3D7_1248900 369 RKMNLMR|GI 0.129 . PF3D7_1248900 375 RGIDMLK|IA 0.066 . PF3D7_1248900 389 CSGAEVK|AV 0.103 . PF3D7_1248900 401 AGMFALR|ER 0.080 . PF3D7_1248900 403 MFALRER|RV 0.129 . PF3D7_1248900 404 FALRERR|VH 0.353 . PF3D7_1248900 418 FEMAVAK|VM 0.065 . PF3D7_1248900 421 AVAKVMK|QD 0.074 . PF3D7_1248900 426 MKQDAEK|NF 0.058 . PF3D7_1248900 431 EKNFTLR|KL 0.106 . PF3D7_1248900 432 KNFTLRK|LW 0.077 . PF3D7_1248900 435 TLRKLWK|-- 0.080 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1248900 ATGGCAGCTGTTGATTTCGATGTAAGGTCAAAAAATCTGTCAGAAGGTATAAAGAACGAA ATATCAGAAAAGAATATGGAAAATAATAATAATAATGATAATAATAAAAATAGCAGTGCA TTAAATGAAGAACAAGTACAATCTGGAATAAAAAGATATTATGAATTAAAAATAGAAGAA TATGAATCGATTATAAATAAGAAATTACAAAATAAAAAAAGATTAGAAGCACAAAGAAAT GAATTAAATGCTAGAGTTCGTGAATTATGTGATGAAATACAATATTTATTAGAAGCTGCT TCTTATGTAGGTGAAATTGTAAAACCAATGGGAAAAAATAAAGTATTAGTAAAAATAAAT CCTGAAGGAAAATATGTTGTAGATATTGCTAGACATATAAATATATCTCACTGTACTCCG AATACAAGAGTTGCATTATATAATGATTCTTATAAATTACATAAAATCTTACCTAGTAAA GTAGATCCTTTGGTTTCTCTTATGAAAGTTGAAAAAGTTCCAGATTCTACTTATGAAATG GTAGGAGGATTAGATCAACAAGTCAAAGAAGTAAAAGAAGTCATCGAATTACCTGTAAAA CATCCTGAAATTTTCGAATCTTTAGGTATATCACAACCTAAAGGAGTATTATTATATGGA CCTCCAGGAACAGGAAAAACATTATTAGCAAGAGCAGTAGCACATCATACAGATTGTACC TTTATTAGAGTTTCAGGTTCTGAATTAGTACAGAAATATATAGGTGAAGGATCACGTATG GTCAGAGAATTATTTGTTATGGCTAGAGAACATGCACCTTCTATTATTTTTATGGATGAA ATCGATTCAATTGGAAGCCAAAGAATTGAAGGAGAACATGGTGATTCAGAAGTACAAAGA ACAATGATGGAATTGTTAAACCAACTAGATGGTTTTGAATCGACACAAAATATTAAAGTT ATCATGTGCACCAATCGTATTGATATACTAGATGAAGCTTTATTAAGACCTGGACGTATA GACAGAAAAATCGAATTTCCAAATCCAAATGTAGAAGCACGTATGGAAATATTAAAAATA CATAGCAGAAAAATGAACCTAATGAGAGGTATAGACATGCTCAAAATAGCAACAGATATG AATAATTGTTCAGGTGCTGAGGTAAAAGCTGTTTGTACAGAAGCTGGAATGTTTGCCTTA AGAGAAAGAAGAGTACATGTAACACAGGAAGATTTCGAAATGGCTGTTGCTAAGGTTATG AAGCAAGACGCAGAGAAAAATTTTACTCTTAGAAAATTATGGAAATGA
  • Download Fasta

  • Fasta :-

    MAAVDFDVRSKNLSEGIKNEISEKNMENNNNNDNNKNSSALNEEQVQSGIKRYYELKIEE YESIINKKLQNKKRLEAQRNELNARVRELCDEIQYLLEAASYVGEIVKPMGKNKVLVKIN PEGKYVVDIARHINISHCTPNTRVALYNDSYKLHKILPSKVDPLVSLMKVEKVPDSTYEM VGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTDCT FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEHGDSEVQR TMMELLNQLDGFESTQNIKVIMCTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKI HSRKMNLMRGIDMLKIATDMNNCSGAEVKAVCTEAGMFALRERRVHVTQEDFEMAVAKVM KQDAEKNFTLRKLWK

    No Results
  • title: ATP binding site
  • coordinates: P221,P222,G223,T224,G225,K226,T227,L228,D279,N325
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_1248900245 SFIRVSGSEL0.996unspPF3D7_1248900245 SFIRVSGSEL0.996unspPF3D7_1248900245 SFIRVSGSEL0.996unspPF3D7_124890022 SKNEISEKNM0.99unspPF3D7_1248900176 SKVPDSTYEM0.996unsp

2277.t00469      MAL12P1.468      PFL2345c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India