PF3D7_1320400 | type I signal peptidase

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1320400OTHER0.9864700.0024410.011089
No Results

  • Fasta :-

    >PF3D7_1320400 MNLLIYSCFNKSICFFLRRDLYLKKKNCTKVSFFNYFNSKEWNRYEKRIRKKSIILQNDA ISNKFYIKNKIFCNKNVLLLPLEYKNNKQFQNCTIKIWKRNKNGYHIGLRNKKGSKKNNN NNNNNNNKRKKINFFSHVEPIKDFLKFTKKIVLCCFVIYGINNYIFDMTLTSGSSMYPLI NQNGVILFYVCDYSLRWFNNLKKIYLSIYMNILYKCYNILQLHFDYEYTSYLYEIIYNKI NKLKNKIKKCRHIYKRGDVVLLVSPVNEKKRVCKRIIAIENDKLFIDNFHSYVEIPPNNI WVEGDNQMDSYDSRNYGSVHVQLIIGKVFFLLDPFKEFAFVNSERNYKPDLRRYLHISN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1320400.fa Sequence name : PF3D7_1320400 Sequence length : 359 VALUES OF COMPUTED PARAMETERS Coef20 : 4.683 CoefTot : -0.729 ChDiff : 37 ZoneTo : 40 KR : 8 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.982 1.606 0.207 0.613 MesoH : 0.009 0.627 -0.194 0.331 MuHd_075 : 36.903 20.471 12.110 7.279 MuHd_095 : 32.952 22.751 7.865 8.898 MuHd_100 : 25.361 16.697 8.094 6.931 MuHd_105 : 22.233 13.951 6.679 6.039 Hmax_075 : 9.333 8.867 1.372 3.302 Hmax_095 : 19.600 15.663 0.001 5.915 Hmax_100 : -1.900 10.300 0.530 3.600 Hmax_105 : 2.100 2.300 -1.469 4.320 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0789 0.9211 DFMC : 0.3147 0.6853 This protein is probably imported in mitochondria. f(Ser) = 0.1000 f(Arg) = 0.0500 CMi = 0.71429 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 359 PF3D7_1320400 MNLLIYSCFNKSICFFLRRDLYLKKKNCTKVSFFNYFNSKEWNRYEKRIRKKSIILQNDAISNKFYIKNKIFCNKNVLLL 80 PLEYKNNKQFQNCTIKIWKRNKNGYHIGLRNKKGSKKNNNNNNNNNNKRKKINFFSHVEPIKDFLKFTKKIVLCCFVIYG 160 INNYIFDMTLTSGSSMYPLINQNGVILFYVCDYSLRWFNNLKKIYLSIYMNILYKCYNILQLHFDYEYTSYLYEIIYNKI 240 NKLKNKIKKCRHIYKRGDVVLLVSPVNEKKRVCKRIIAIENDKLFIDNFHSYVEIPPNNIWVEGDNQMDSYDSRNYGSVH 320 VQLIIGKVFFLLDPFKEFAFVNSERNYKPDLRRYLHISN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1320400 11 IYSCFNK|SI 0.097 . PF3D7_1320400 18 SICFFLR|RD 0.073 . PF3D7_1320400 19 ICFFLRR|DL 0.132 . PF3D7_1320400 24 RRDLYLK|KK 0.057 . PF3D7_1320400 25 RDLYLKK|KN 0.089 . PF3D7_1320400 26 DLYLKKK|NC 0.091 . PF3D7_1320400 30 KKKNCTK|VS 0.060 . PF3D7_1320400 40 FNYFNSK|EW 0.067 . PF3D7_1320400 44 NSKEWNR|YE 0.089 . PF3D7_1320400 47 EWNRYEK|RI 0.128 . PF3D7_1320400 48 WNRYEKR|IR 0.166 . PF3D7_1320400 50 RYEKRIR|KK 0.104 . PF3D7_1320400 51 YEKRIRK|KS 0.181 . PF3D7_1320400 52 EKRIRKK|SI 0.212 . PF3D7_1320400 64 NDAISNK|FY 0.071 . PF3D7_1320400 68 SNKFYIK|NK 0.062 . PF3D7_1320400 70 KFYIKNK|IF 0.065 . PF3D7_1320400 75 NKIFCNK|NV 0.067 . PF3D7_1320400 85 LLPLEYK|NN 0.061 . PF3D7_1320400 88 LEYKNNK|QF 0.059 . PF3D7_1320400 96 FQNCTIK|IW 0.065 . PF3D7_1320400 99 CTIKIWK|RN 0.060 . PF3D7_1320400 100 TIKIWKR|NK 0.172 . PF3D7_1320400 102 KIWKRNK|NG 0.062 . PF3D7_1320400 110 GYHIGLR|NK 0.073 . PF3D7_1320400 112 HIGLRNK|KG 0.062 . PF3D7_1320400 113 IGLRNKK|GS 0.254 . PF3D7_1320400 116 RNKKGSK|KN 0.060 . PF3D7_1320400 117 NKKGSKK|NN 0.096 . PF3D7_1320400 128 NNNNNNK|RK 0.066 . PF3D7_1320400 129 NNNNNKR|KK 0.194 . PF3D7_1320400 130 NNNNKRK|KI 0.105 . PF3D7_1320400 131 NNNKRKK|IN 0.122 . PF3D7_1320400 142 SHVEPIK|DF 0.066 . PF3D7_1320400 146 PIKDFLK|FT 0.068 . PF3D7_1320400 149 DFLKFTK|KI 0.057 . PF3D7_1320400 150 FLKFTKK|IV 0.109 . PF3D7_1320400 196 VCDYSLR|WF 0.073 . PF3D7_1320400 202 RWFNNLK|KI 0.064 . PF3D7_1320400 203 WFNNLKK|IY 0.094 . PF3D7_1320400 215 YMNILYK|CY 0.066 . PF3D7_1320400 239 YEIIYNK|IN 0.054 . PF3D7_1320400 242 IYNKINK|LK 0.067 . PF3D7_1320400 244 NKINKLK|NK 0.071 . PF3D7_1320400 246 INKLKNK|IK 0.060 . PF3D7_1320400 248 KLKNKIK|KC 0.072 . PF3D7_1320400 249 LKNKIKK|CR 0.128 . PF3D7_1320400 251 NKIKKCR|HI 0.148 . PF3D7_1320400 255 KCRHIYK|RG 0.074 . PF3D7_1320400 256 CRHIYKR|GD 0.245 . PF3D7_1320400 269 VSPVNEK|KR 0.052 . PF3D7_1320400 270 SPVNEKK|RV 0.148 . PF3D7_1320400 271 PVNEKKR|VC 0.209 . PF3D7_1320400 274 EKKRVCK|RI 0.228 . PF3D7_1320400 275 KKRVCKR|II 0.228 . PF3D7_1320400 283 IAIENDK|LF 0.061 . PF3D7_1320400 314 MDSYDSR|NY 0.135 . PF3D7_1320400 327 VQLIIGK|VF 0.055 . PF3D7_1320400 336 FLLDPFK|EF 0.057 . PF3D7_1320400 345 AFVNSER|NY 0.088 . PF3D7_1320400 348 NSERNYK|PD 0.093 . PF3D7_1320400 352 NYKPDLR|RY 0.068 . PF3D7_1320400 353 YKPDLRR|YL 0.160 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1320400 ATGAATTTGCTTATATACAGCTGTTTTAACAAAAGTATTTGCTTTTTTTTAAGAAGAGAC TTATATTTGAAAAAAAAGAATTGTACTAAAGTAAGTTTTTTTAATTATTTTAATTCGAAA GAATGGAATAGATACGAGAAAAGGATACGAAAAAAAAGTATAATATTACAAAATGATGCA ATATCAAATAAATTTTATATAAAAAATAAAATTTTTTGTAATAAAAATGTATTACTACTA CCTTTGGAATATAAAAACAATAAACAATTTCAAAATTGTACTATAAAAATATGGAAGAGG AATAAAAATGGTTATCATATTGGACTAAGGAACAAAAAAGGAAGCAAAAAAAATAACAAT AATAATAATAATAATAATAATAAAAGAAAAAAAATAAATTTTTTTTCACACGTTGAACCG ATTAAGGATTTTTTAAAATTCACAAAAAAAATCGTATTATGTTGCTTTGTAATATATGGT ATAAATAATTATATATTTGATATGACACTTACAAGTGGATCTAGTATGTATCCGTTAATT AATCAGAATGGAGTTATATTATTTTATGTATGTGATTATTCTTTAAGATGGTTTAATAAT TTAAAGAAAATATACTTATCTATATATATGAATATTTTATACAAATGTTATAATATTTTA CAATTACATTTTGATTATGAATATACTTCTTATTTGTATGAAATTATTTACAACAAAATA AATAAATTAAAAAATAAAATAAAAAAATGTCGTCATATATATAAACGAGGTGATGTGGTA CTATTAGTATCTCCTGTAAATGAAAAAAAAAGAGTGTGTAAAAGAATTATTGCTATAGAA AATGATAAATTGTTTATTGACAATTTCCATTCTTATGTAGAAATACCTCCAAATAATATA TGGGTAGAAGGAGATAATCAAATGGATTCTTATGATAGTAGAAATTATGGTTCAGTACAT GTTCAGTTAATAATTGGTAAAGTATTCTTTTTATTAGACCCCTTCAAAGAATTTGCATTT GTTAATTCGGAAAGGAATTACAAGCCGGACCTCAGGAGATATTTACACATTTCAAATTGA
  • Download Fasta

  • Fasta :-

    MNLLIYSCFNKSICFFLRRDLYLKKKNCTKVSFFNYFNSKEWNRYEKRIRKKSIILQNDA ISNKFYIKNKIFCNKNVLLLPLEYKNNKQFQNCTIKIWKRNKNGYHIGLRNKKGSKKNNN NNNNNNNKRKKINFFSHVEPIKDFLKFTKKIVLCCFVIYGINNYIFDMTLTSGSSMYPLI NQNGVILFYVCDYSLRWFNNLKKIYLSIYMNILYKCYNILQLHFDYEYTSYLYEIIYNKI NKLKNKIKKCRHIYKRGDVVLLVSPVNEKKRVCKRIIAIENDKLFIDNFHSYVEIPPNNI WVEGDNQMDSYDSRNYGSVHVQLIIGKVFFLLDPFKEFAFVNSERNYKPDLRRYLHISN

No Results
No Results
IDSitePeptideScoreMethod
PF3D7_1320400115 SNKKGSKKNN0.995unsp

PF13_0118      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India