PF3D7_1328100 | proteasome subunit beta type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1328100OTHER0.9998780.0000810.000042
No Results

  • Fasta :-

    >PF3D7_1328100 MKLEYINILKEENGGYNFDNLKRNEILKEKGVKFPQFRKTGTTICGLVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIWCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVSMC VSRLTQELFKYQGYKVCAIVLGGVDVNGPQLYGIHPHGSSCLLPFTALGSGSLNAMAVLE AKYRDNMTIEEGKNLVCEAICAGIFNDLGSGGNVDICVITKDSYQHIRPYKEPNMRLYHL PHPTIYPKGTTPILSEKIEYIKKFISVEDA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1328100.fa Sequence name : PF3D7_1328100 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 2.714 CoefTot : 0.009 ChDiff : 2 ZoneTo : 3 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.476 1.412 0.311 0.535 MesoH : -0.109 0.469 -0.212 0.284 MuHd_075 : 19.761 10.961 6.453 3.533 MuHd_095 : 1.817 1.100 1.921 1.425 MuHd_100 : 6.779 3.362 2.736 2.417 MuHd_105 : 10.137 7.725 3.719 3.039 Hmax_075 : 0.400 7.500 -1.626 3.760 Hmax_095 : -8.500 0.600 -3.926 2.180 Hmax_100 : 0.700 3.700 -1.324 3.400 Hmax_105 : -6.533 3.967 -3.679 1.843 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9965 0.0035 DFMC : 0.9872 0.0128
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 PF3D7_1328100 MKLEYINILKEENGGYNFDNLKRNEILKEKGVKFPQFRKTGTTICGLVCQNAVILGADTRATEGPIVADKNCSKLHYISK 80 NIWCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVSMCVSRLTQELFKYQGYKVCAIVLGGVDVNGPQLYGIHPHGSS 160 CLLPFTALGSGSLNAMAVLEAKYRDNMTIEEGKNLVCEAICAGIFNDLGSGGNVDICVITKDSYQHIRPYKEPNMRLYHL 240 PHPTIYPKGTTPILSEKIEYIKKFISVEDA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1328100 2 -----MK|LE 0.059 . PF3D7_1328100 10 EYINILK|EE 0.055 . PF3D7_1328100 22 YNFDNLK|RN 0.057 . PF3D7_1328100 23 NFDNLKR|NE 0.138 . PF3D7_1328100 28 KRNEILK|EK 0.095 . PF3D7_1328100 30 NEILKEK|GV 0.068 . PF3D7_1328100 33 LKEKGVK|FP 0.061 . PF3D7_1328100 38 VKFPQFR|KT 0.134 . PF3D7_1328100 39 KFPQFRK|TG 0.070 . PF3D7_1328100 60 ILGADTR|AT 0.099 . PF3D7_1328100 70 GPIVADK|NC 0.065 . PF3D7_1328100 74 ADKNCSK|LH 0.059 . PF3D7_1328100 80 KLHYISK|NI 0.078 . PF3D7_1328100 108 HNVELHR|LN 0.078 . PF3D7_1328100 116 NTNTQPR|VS 0.090 . PF3D7_1328100 123 VSMCVSR|LT 0.097 . PF3D7_1328100 130 LTQELFK|YQ 0.074 . PF3D7_1328100 135 FKYQGYK|VC 0.069 . PF3D7_1328100 182 MAVLEAK|YR 0.065 . PF3D7_1328100 184 VLEAKYR|DN 0.162 . PF3D7_1328100 193 MTIEEGK|NL 0.057 . PF3D7_1328100 221 DICVITK|DS 0.073 . PF3D7_1328100 228 DSYQHIR|PY 0.089 . PF3D7_1328100 231 QHIRPYK|EP 0.114 . PF3D7_1328100 236 YKEPNMR|LY 0.083 . PF3D7_1328100 248 HPTIYPK|GT 0.080 . PF3D7_1328100 257 TPILSEK|IE 0.064 . PF3D7_1328100 262 EKIEYIK|KF 0.065 . PF3D7_1328100 263 KIEYIKK|FI 0.116 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1328100 ATGAAACTCGAATATATAAATATACTCAAAGAAGAAAACGGAGGATATAATTTTGATAAC TTAAAAAGAAATGAAATATTAAAAGAAAAGGGAGTAAAGTTTCCACAATTTCGAAAAACA GGAACAACAATCTGTGGATTGGTTTGCCAAAATGCAGTTATTTTGGGTGCCGATACAAGA GCTACGGAGGGACCAATAGTAGCTGATAAAAATTGTAGTAAATTACATTATATAAGTAAA AATATATGGTGTGCAGGTGCAGGTGTAGCAGGAGATTTAGAACATACAACTTTATGGTTA CAACATAATGTCGAATTACATCGTTTAAATACAAATACACAACCAAGAGTATCCATGTGT GTATCAAGATTAACTCAAGAATTATTTAAATATCAAGGATATAAAGTATGTGCAATAGTA TTAGGTGGAGTAGATGTTAATGGACCACAATTATATGGGATACATCCCCATGGTTCATCT TGTTTATTACCATTTACAGCTTTGGGTTCAGGATCTTTAAATGCTATGGCAGTATTAGAA GCAAAATATAGAGACAATATGACAATAGAAGAAGGAAAAAATCTAGTATGTGAAGCTATA TGTGCAGGTATTTTTAATGATTTAGGTTCTGGTGGTAATGTAGATATATGTGTTATTACA AAAGATAGTTATCAACATATAAGACCTTATAAAGAACCAAACATGCGATTATATCACTTA CCTCATCCAACTATTTATCCAAAAGGAACCACACCTATTTTATCTGAAAAAATTGAATAT ATTAAAAAATTTATATCTGTAGAAGATGCATAA
  • Download Fasta

  • Fasta :-

    MKLEYINILKEENGGYNFDNLKRNEILKEKGVKFPQFRKTGTTICGLVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIWCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVSMC VSRLTQELFKYQGYKVCAIVLGGVDVNGPQLYGIHPHGSSCLLPFTALGSGSLNAMAVLE AKYRDNMTIEEGKNLVCEAICAGIFNDLGSGGNVDICVITKDSYQHIRPYKEPNMRLYHL PHPTIYPKGTTPILSEKIEYIKKFISVEDA

No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_1328100118 SQPRVSMCVS0.996unspPF3D7_1328100266 SKKFISVEDA0.997unsp

PF13_0156      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India