PF3D7_1345200 | rhomboid protease ROM6, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1345200OTHER0.9992760.0000020.000722
No Results

  • Fasta :-

    >PF3D7_1345200 MLIYHKFCKYKKKNEDLFINIIYNKHNSLFGNLNKSGKKYIHTCTALKRKDRVRCERKIK LKEKFKIIVYASLYFFTCDYLYHEFILKNSKNEKNEAKKREQNIEVVRLNNGIINKGGDN NNINNSNNNIYKQNDIVKKDQSYFFLYSNPFVNFFIDSIKKLNIFINSNTIHNENEDKQG DKNLKKSDRKNDEKENNSYEIKITRGSRNKNIYENSNMDKEKLYKGDYHNNDNYKKHNNN NNNNNNMTNIFTNHIYNKNYFFNKCNLFLLCNGLIFITWRISEVLINKRLFHFMCRNFIC SYNNIKQKYIHTIITSSISHITFPHFLFNMWAFYTITNTLLSPEIGEKKKKFYFFNYKSN VLQQKMNDQDIINICVLSSICSTIPYILLNKKNQILGASGSIMGLVYILSTLKPNEVFIS LFPLPYLKLTALQLCHLSILTNIFFLFFRKKKVNHFNIAWSAHMFGLLGGALYNIYQRKI KNNNNYYPFIQLSIKNGYIDYLNSYLDLIDMLKCFCLQTKMFFSLDIKTMQSLNRKINSI KSHTAQRRIHFQIKKMKNLEFLSKRNQLQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1345200.fa Sequence name : PF3D7_1345200 Sequence length : 569 VALUES OF COMPUTED PARAMETERS Coef20 : 3.370 CoefTot : -1.130 ChDiff : 48 ZoneTo : 14 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.800 1.794 0.442 0.655 MesoH : 0.597 1.047 -0.043 0.437 MuHd_075 : 21.592 21.495 8.453 4.645 MuHd_095 : 18.369 11.471 5.598 4.643 MuHd_100 : 25.428 13.401 7.365 5.514 MuHd_105 : 29.766 12.955 8.078 5.623 Hmax_075 : 0.438 10.850 -0.849 2.879 Hmax_095 : 1.575 7.875 -2.012 3.483 Hmax_100 : -1.000 5.200 -2.922 2.880 Hmax_105 : 3.967 5.833 -0.862 4.013 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7203 0.2797 DFMC : 0.7999 0.2001
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 569 PF3D7_1345200 MLIYHKFCKYKKKNEDLFINIIYNKHNSLFGNLNKSGKKYIHTCTALKRKDRVRCERKIKLKEKFKIIVYASLYFFTCDY 80 LYHEFILKNSKNEKNEAKKREQNIEVVRLNNGIINKGGDNNNINNSNNNIYKQNDIVKKDQSYFFLYSNPFVNFFIDSIK 160 KLNIFINSNTIHNENEDKQGDKNLKKSDRKNDEKENNSYEIKITRGSRNKNIYENSNMDKEKLYKGDYHNNDNYKKHNNN 240 NNNNNNMTNIFTNHIYNKNYFFNKCNLFLLCNGLIFITWRISEVLINKRLFHFMCRNFICSYNNIKQKYIHTIITSSISH 320 ITFPHFLFNMWAFYTITNTLLSPEIGEKKKKFYFFNYKSNVLQQKMNDQDIINICVLSSICSTIPYILLNKKNQILGASG 400 SIMGLVYILSTLKPNEVFISLFPLPYLKLTALQLCHLSILTNIFFLFFRKKKVNHFNIAWSAHMFGLLGGALYNIYQRKI 480 KNNNNYYPFIQLSIKNGYIDYLNSYLDLIDMLKCFCLQTKMFFSLDIKTMQSLNRKINSIKSHTAQRRIHFQIKKMKNLE 560 FLSKRNQLQ 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ......... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1345200 6 -MLIYHK|FC 0.057 . PF3D7_1345200 9 IYHKFCK|YK 0.088 . PF3D7_1345200 11 HKFCKYK|KK 0.071 . PF3D7_1345200 12 KFCKYKK|KN 0.105 . PF3D7_1345200 13 FCKYKKK|NE 0.111 . PF3D7_1345200 25 INIIYNK|HN 0.064 . PF3D7_1345200 35 LFGNLNK|SG 0.089 . PF3D7_1345200 38 NLNKSGK|KY 0.069 . PF3D7_1345200 39 LNKSGKK|YI 0.114 . PF3D7_1345200 48 HTCTALK|RK 0.058 . PF3D7_1345200 49 TCTALKR|KD 0.111 . PF3D7_1345200 50 CTALKRK|DR 0.100 . PF3D7_1345200 52 ALKRKDR|VR 0.157 . PF3D7_1345200 54 KRKDRVR|CE 0.104 . PF3D7_1345200 57 DRVRCER|KI 0.254 . PF3D7_1345200 58 RVRCERK|IK 0.075 . PF3D7_1345200 60 RCERKIK|LK 0.123 . PF3D7_1345200 62 ERKIKLK|EK 0.077 . PF3D7_1345200 64 KIKLKEK|FK 0.082 . PF3D7_1345200 66 KLKEKFK|II 0.064 . PF3D7_1345200 88 YHEFILK|NS 0.054 . PF3D7_1345200 91 FILKNSK|NE 0.050 . PF3D7_1345200 94 KNSKNEK|NE 0.076 . PF3D7_1345200 98 NEKNEAK|KR 0.075 . PF3D7_1345200 99 EKNEAKK|RE 0.094 . PF3D7_1345200 100 KNEAKKR|EQ 0.179 . PF3D7_1345200 108 QNIEVVR|LN 0.086 . PF3D7_1345200 116 NNGIINK|GG 0.062 . PF3D7_1345200 132 SNNNIYK|QN 0.086 . PF3D7_1345200 138 KQNDIVK|KD 0.063 . PF3D7_1345200 139 QNDIVKK|DQ 0.129 . PF3D7_1345200 160 FFIDSIK|KL 0.062 . PF3D7_1345200 161 FIDSIKK|LN 0.072 . PF3D7_1345200 178 HNENEDK|QG 0.070 . PF3D7_1345200 182 EDKQGDK|NL 0.060 . PF3D7_1345200 185 QGDKNLK|KS 0.061 . PF3D7_1345200 186 GDKNLKK|SD 0.137 . PF3D7_1345200 189 NLKKSDR|KN 0.134 . PF3D7_1345200 190 LKKSDRK|ND 0.087 . PF3D7_1345200 194 DRKNDEK|EN 0.066 . PF3D7_1345200 202 NNSYEIK|IT 0.075 . PF3D7_1345200 205 YEIKITR|GS 0.086 . PF3D7_1345200 208 KITRGSR|NK 0.214 . PF3D7_1345200 210 TRGSRNK|NI 0.073 . PF3D7_1345200 220 ENSNMDK|EK 0.070 . PF3D7_1345200 222 SNMDKEK|LY 0.073 . PF3D7_1345200 225 DKEKLYK|GD 0.066 . PF3D7_1345200 235 HNNDNYK|KH 0.065 . PF3D7_1345200 236 NNDNYKK|HN 0.088 . PF3D7_1345200 258 TNHIYNK|NY 0.068 . PF3D7_1345200 264 KNYFFNK|CN 0.063 . PF3D7_1345200 280 LIFITWR|IS 0.087 . PF3D7_1345200 288 SEVLINK|RL 0.057 . PF3D7_1345200 289 EVLINKR|LF 0.106 . PF3D7_1345200 296 LFHFMCR|NF 0.085 . PF3D7_1345200 306 CSYNNIK|QK 0.061 . PF3D7_1345200 308 YNNIKQK|YI 0.120 . PF3D7_1345200 348 SPEIGEK|KK 0.057 . PF3D7_1345200 349 PEIGEKK|KK 0.081 . PF3D7_1345200 350 EIGEKKK|KF 0.083 . PF3D7_1345200 351 IGEKKKK|FY 0.127 . PF3D7_1345200 358 FYFFNYK|SN 0.072 . PF3D7_1345200 365 SNVLQQK|MN 0.076 . PF3D7_1345200 391 PYILLNK|KN 0.056 . PF3D7_1345200 392 YILLNKK|NQ 0.072 . PF3D7_1345200 413 YILSTLK|PN 0.056 . PF3D7_1345200 428 FPLPYLK|LT 0.057 . PF3D7_1345200 449 IFFLFFR|KK 0.073 . PF3D7_1345200 450 FFLFFRK|KK 0.065 . PF3D7_1345200 451 FLFFRKK|KV 0.117 . PF3D7_1345200 452 LFFRKKK|VN 0.267 . PF3D7_1345200 478 LYNIYQR|KI 0.081 . PF3D7_1345200 479 YNIYQRK|IK 0.080 . PF3D7_1345200 481 IYQRKIK|NN 0.128 . PF3D7_1345200 495 FIQLSIK|NG 0.058 . PF3D7_1345200 513 DLIDMLK|CF 0.059 . PF3D7_1345200 520 CFCLQTK|MF 0.060 . PF3D7_1345200 528 FFSLDIK|TM 0.056 . PF3D7_1345200 535 TMQSLNR|KI 0.108 . PF3D7_1345200 536 MQSLNRK|IN 0.103 . PF3D7_1345200 541 RKINSIK|SH 0.103 . PF3D7_1345200 547 KSHTAQR|RI 0.116 . PF3D7_1345200 548 SHTAQRR|IH 0.171 . PF3D7_1345200 554 RIHFQIK|KM 0.067 . PF3D7_1345200 555 IHFQIKK|MK 0.086 . PF3D7_1345200 557 FQIKKMK|NL 0.066 . PF3D7_1345200 564 NLEFLSK|RN 0.059 . PF3D7_1345200 565 LEFLSKR|NQ 0.150 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1345200 ATGCTAATATACCATAAATTTTGTAAATATAAGAAAAAAAATGAAGATTTATTTATTAAC ATAATTTACAATAAGCATAATTCGTTATTCGGTAACTTAAACAAGAGCGGGAAAAAATAT ATTCACACATGTACAGCTCTAAAAAGAAAAGATAGAGTAAGGTGTGAGAGGAAAATAAAA TTAAAAGAAAAGTTTAAAATTATTGTTTATGCGTCATTATATTTTTTTACATGTGATTAT TTATATCATGAATTTATTTTAAAAAATAGTAAGAATGAAAAAAACGAAGCAAAAAAAAGA GAACAAAATATTGAGGTCGTTCGTTTAAATAATGGAATTATAAACAAAGGAGGTGATAAT AATAATATTAATAATAGTAATAATAATATATATAAACAAAATGATATTGTAAAAAAAGAT CAGTCCTATTTCTTTCTTTATAGTAATCCTTTTGTAAATTTTTTCATAGATAGTATTAAA AAATTAAACATTTTTATCAACTCAAATACGATACATAACGAAAATGAGGATAAGCAAGGT GACAAGAATTTGAAAAAGTCTGATAGAAAAAATGATGAGAAGGAAAACAATTCTTATGAA ATAAAAATTACAAGGGGGAGTAGAAATAAAAATATATATGAAAATTCAAATATGGATAAA GAAAAATTATACAAAGGAGATTATCATAATAATGATAATTACAAAAAACATAACAATAAT AATAATAATAATAATAATATGACTAATATATTTACAAATCATATATATAACAAAAATTAT TTTTTTAATAAATGCAACTTATTTTTACTTTGTAATGGATTAATATTTATTACATGGAGA ATTAGTGAGGTGTTGATAAATAAGAGATTATTTCATTTTATGTGTAGAAATTTTATATGC TCTTATAATAATATAAAACAGAAATATATACATACAATTATTACATCAAGTATTAGTCAT ATTACTTTTCCACATTTTTTATTTAATATGTGGGCTTTCTATACAATTACAAATACATTA TTATCCCCAGAAATAGGAGAAAAGAAAAAAAAGTTTTATTTTTTTAATTATAAATCTAAT GTATTACAACAAAAAATGAATGATCAGGATATTATAAATATATGTGTATTATCTTCTATA TGTTCAACTATACCATATATTCTATTAAATAAAAAAAATCAAATACTTGGAGCGTCTGGT TCTATCATGGGGTTAGTATATATATTATCAACATTAAAACCAAATGAAGTGTTTATTTCA TTATTCCCATTACCTTATTTGAAATTAACAGCATTACAATTATGTCATTTAAGTATATTA ACAAATATATTTTTTCTTTTTTTTCGAAAAAAAAAAGTAAATCATTTCAACATTGCATGG TCAGCACATATGTTTGGTCTTTTAGGTGGTGCACTATATAATATATATCAAAGAAAAATA AAAAATAATAATAATTATTATCCATTTATTCAACTCTCTATAAAAAATGGATATATAGAT TATCTTAATTCATATTTAGATCTTATAGATATGTTAAAGTGTTTCTGCCTACAAACAAAA ATGTTCTTCTCTCTAGATATAAAAACAATGCAATCACTTAACAGAAAAATAAATTCTATT AAATCACACACAGCACAAAGAAGAATACATTTCCAAATTAAAAAAATGAAAAACTTGGAG TTCTTATCCAAAAGAAATCAATTACAATAA
  • Download Fasta

  • Fasta :-

    MLIYHKFCKYKKKNEDLFINIIYNKHNSLFGNLNKSGKKYIHTCTALKRKDRVRCERKIK LKEKFKIIVYASLYFFTCDYLYHEFILKNSKNEKNEAKKREQNIEVVRLNNGIINKGGDN NNINNSNNNIYKQNDIVKKDQSYFFLYSNPFVNFFIDSIKKLNIFINSNTIHNENEDKQG DKNLKKSDRKNDEKENNSYEIKITRGSRNKNIYENSNMDKEKLYKGDYHNNDNYKKHNNN NNNNNNMTNIFTNHIYNKNYFFNKCNLFLLCNGLIFITWRISEVLINKRLFHFMCRNFIC SYNNIKQKYIHTIITSSISHITFPHFLFNMWAFYTITNTLLSPEIGEKKKKFYFFNYKSN VLQQKMNDQDIINICVLSSICSTIPYILLNKKNQILGASGSIMGLVYILSTLKPNEVFIS LFPLPYLKLTALQLCHLSILTNIFFLFFRKKKVNHFNIAWSAHMFGLLGGALYNIYQRKI KNNNNYYPFIQLSIKNGYIDYLNSYLDLIDMLKCFCLQTKMFFSLDIKTMQSLNRKINSI KSHTAQRRIHFQIKKMKNLEFLSKRNQLQ

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_1345200187 SNLKKSDRKN0.995unspPF3D7_1345200342 SNTLLSPEIG0.996unsp

PF13_0241      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India