PF3D7_1353800 | proteasome subunit alpha type-4, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1353800OTHER0.9997030.0000950.000202
No Results

  • Fasta :-

    >PF3D7_1353800 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGLITKDGVILGADKVFISKLIDKAN NYEKIYKIDKHIFCGVAGLNADANILINQSRLYAQRYLYNYNEVQPVSQLVVQICDIKQS YTQYGGLRPYGVSFLIGGYDTKDGYQLYHTDPSGNYSGWFATAIGTNNLTASSVLKQEWK NDMTLEEGLLLALKTLAKSTDTEIPKSEKIELAYLTNKDGEVYQKYLTEKEIEELIKLYT QKYIKE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1353800.fa Sequence name : PF3D7_1353800 Sequence length : 246 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.254 ChDiff : -2 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.053 1.329 0.075 0.526 MesoH : -0.561 0.324 -0.392 0.212 MuHd_075 : 23.056 5.387 3.615 6.134 MuHd_095 : 14.841 4.720 3.134 2.857 MuHd_100 : 18.488 8.050 3.829 4.676 MuHd_105 : 19.679 11.334 4.048 6.197 Hmax_075 : -3.850 -2.975 -3.651 0.210 Hmax_095 : -1.312 -1.050 -2.054 0.411 Hmax_100 : 10.800 3.300 0.402 2.970 Hmax_105 : -1.283 -0.933 -1.926 2.065 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7943 0.2057 DFMC : 0.6938 0.3062
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 246 PF3D7_1353800 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGLITKDGVILGADKVFISKLIDKANNYEKIYKIDKHIFCGVAGLN 80 ADANILINQSRLYAQRYLYNYNEVQPVSQLVVQICDIKQSYTQYGGLRPYGVSFLIGGYDTKDGYQLYHTDPSGNYSGWF 160 ATAIGTNNLTASSVLKQEWKNDMTLEEGLLLALKTLAKSTDTEIPKSEKIELAYLTNKDGEVYQKYLTEKEIEELIKLYT 240 QKYIKE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1353800 3 ----MAR|RY 0.096 . PF3D7_1353800 4 ---MARR|YD 0.146 . PF3D7_1353800 8 ARRYDSR|TT 0.106 . PF3D7_1353800 17 TFSPEGR|LY 0.096 . PF3D7_1353800 40 TIGLITK|DG 0.062 . PF3D7_1353800 49 VILGADK|VF 0.054 . PF3D7_1353800 54 DKVFISK|LI 0.067 . PF3D7_1353800 58 ISKLIDK|AN 0.061 . PF3D7_1353800 64 KANNYEK|IY 0.067 . PF3D7_1353800 67 NYEKIYK|ID 0.066 . PF3D7_1353800 70 KIYKIDK|HI 0.071 . PF3D7_1353800 91 ILINQSR|LY 0.081 . PF3D7_1353800 96 SRLYAQR|YL 0.102 . PF3D7_1353800 118 VQICDIK|QS 0.063 . PF3D7_1353800 128 TQYGGLR|PY 0.104 . PF3D7_1353800 142 IGGYDTK|DG 0.071 . PF3D7_1353800 176 TASSVLK|QE 0.081 . PF3D7_1353800 180 VLKQEWK|ND 0.065 . PF3D7_1353800 194 GLLLALK|TL 0.061 . PF3D7_1353800 198 ALKTLAK|ST 0.100 . PF3D7_1353800 206 TDTEIPK|SE 0.075 . PF3D7_1353800 209 EIPKSEK|IE 0.057 . PF3D7_1353800 218 LAYLTNK|DG 0.072 . PF3D7_1353800 225 DGEVYQK|YL 0.072 . PF3D7_1353800 230 QKYLTEK|EI 0.072 . PF3D7_1353800 237 EIEELIK|LY 0.062 . PF3D7_1353800 242 IKLYTQK|YI 0.076 . PF3D7_1353800 245 YTQKYIK|E- 0.061 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1353800 ATGGCAAGAAGATATGATAGTAGAACAACTACCTTTTCTCCAGAAGGAAGGTTATATCAA GTAGAATATGCTTTGGAAGCCATAAATAATGCAAGTATAACAATTGGTTTAATAACAAAG GATGGAGTAATATTAGGAGCGGATAAAGTTTTTATTTCAAAATTAATTGATAAAGCTAAT AATTATGAAAAAATATATAAAATTGATAAACACATATTTTGTGGTGTAGCAGGATTGAAT GCTGACGCAAATATTTTAATAAACCAATCTAGATTATATGCACAAAGATATTTATATAAT TATAATGAAGTACAACCAGTATCACAATTAGTAGTTCAAATATGTGATATCAAGCAAAGT TACACACAATATGGTGGATTAAGACCATATGGTGTTAGCTTTTTAATTGGTGGTTATGAT ACAAAAGATGGATACCAACTTTATCATACTGATCCAAGTGGAAATTATTCAGGATGGTTT GCAACAGCTATTGGTACCAATAACTTAACAGCTAGTTCTGTACTTAAACAGGAATGGAAA AATGACATGACTTTGGAAGAAGGTTTGTTATTAGCTTTAAAAACACTAGCAAAAAGTACT GATACGGAAATTCCCAAAAGTGAAAAAATCGAATTAGCATATTTAACAAATAAAGATGGG GAAGTATATCAAAAGTATTTAACGGAAAAGGAAATAGAAGAGTTAATTAAATTGTATACA CAGAAGTATATTAAAGAATAA
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  • Fasta :-

    MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGLITKDGVILGADKVFISKLIDKAN NYEKIYKIDKHIFCGVAGLNADANILINQSRLYAQRYLYNYNEVQPVSQLVVQICDIKQS YTQYGGLRPYGVSFLIGGYDTKDGYQLYHTDPSGNYSGWFATAIGTNNLTASSVLKQEWK NDMTLEEGLLLALKTLAKSTDTEIPKSEKIELAYLTNKDGEVYQKYLTEKEIEELIKLYT QKYIKE

  • title: active site
  • coordinates: S32,D48,V50,K64,T166
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_1353800207 SEIPKSEKIE0.991unspPF3D7_1353800207 SEIPKSEKIE0.991unspPF3D7_1353800207 SEIPKSEKIE0.991unspPF3D7_13538007 SRRYDSRTTT0.992unspPF3D7_135380013 STTTFSPEGR0.99unsp

PF13_0282      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India