PF3D7_1433600 | signal peptidase complex subunit SPC1, putative

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  • Fasta :-

    >PF3D7_1433600 MDVMNYFISIIKHTFVCLKSNQMDYCGQNLAYTIRNIIFGISTIISIIVGYYSQSLALST YIILGGTALASILILPTWPMYNRNNIEWEKSYSSSNDKKRK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1433600.fa Sequence name : PF3D7_1433600 Sequence length : 101 VALUES OF COMPUTED PARAMETERS Coef20 : 4.233 CoefTot : -2.493 ChDiff : 4 ZoneTo : 86 KR : 4 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.971 1.882 0.415 0.764 MesoH : 0.649 0.944 -0.009 0.422 MuHd_075 : 22.550 19.315 9.325 5.323 MuHd_095 : 37.174 31.549 12.334 7.991 MuHd_100 : 40.598 32.921 12.753 8.945 MuHd_105 : 41.083 30.412 12.859 8.690 Hmax_075 : 6.000 22.500 2.462 6.840 Hmax_095 : 12.775 15.575 6.473 5.127 Hmax_100 : 18.500 21.300 5.638 9.500 Hmax_105 : 21.000 28.800 4.949 6.659 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7680 0.2320 DFMC : 0.7360 0.2640
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 101 PF3D7_1433600 MDVMNYFISIIKHTFVCLKSNQMDYCGQNLAYTIRNIIFGISTIISIIVGYYSQSLALSTYIILGGTALASILILPTWPM 80 YNRNNIEWEKSYSSSNDKKRK 160 ................................................................................ 80 ..................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1433600 12 YFISIIK|HT 0.064 . PF3D7_1433600 19 HTFVCLK|SN 0.072 . PF3D7_1433600 35 NLAYTIR|NI 0.119 . PF3D7_1433600 83 TWPMYNR|NN 0.099 . PF3D7_1433600 90 NNIEWEK|SY 0.080 . PF3D7_1433600 98 YSSSNDK|KR 0.061 . PF3D7_1433600 99 SSSNDKK|RK 0.126 . PF3D7_1433600 100 SSNDKKR|K- 0.304 . PF3D7_1433600 101 SNDKKRK|-- 0.114 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1433600 ATGGATGTAATGAACTATTTTATAAGCATAATTAAACATACTTTTGTTTGCCTAAAATCC AATCAAATGGACTATTGTGGTCAAAATCTTGCCTATACTATAAGAAATATTATTTTTGGT ATTAGTACAATAATATCAATAATTGTTGGATATTACAGTCAAAGTTTAGCATTGAGTACA TATATAATATTAGGAGGGACTGCCTTAGCAAGCATTTTAATATTACCAACGTGGCCAATG TATAATCGAAACAATATTGAATGGGAAAAAAGTTACAGTTCATCAAATGATAAAAAGAGA AAATAA
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  • Fasta :-

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IDSitePeptideScoreMethod
PF3D7_143360094 SKSYSSSNDK0.994unsp

1396.t00467      PF14_0317      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India