PF3D7_1470900 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1470900OTHER0.9955070.0036060.000886
No Results

  • Fasta :-

    >PF3D7_1470900 MDTLIGLRGNNFVVLAADTYSINSIIKLKNDDNTKFYDIHGNKCLLLGGSIGDRLQFGEF IRKNVHLYQYQNNTDMFVKSFAFFTRKNLAYYLRRNPFEVNCLIAGYDKKDGYQLYWCDY LSNMDSVNKGAHGYGAYLVSAILDKYYHENLTVDEALDIFKLCFEELKKRFLLTQINYEL RIMYDNKVETQYVTV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1470900.fa Sequence name : PF3D7_1470900 Sequence length : 195 VALUES OF COMPUTED PARAMETERS Coef20 : 3.942 CoefTot : -0.223 ChDiff : 0 ZoneTo : 17 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.347 1.259 -0.084 0.454 MesoH : -1.284 -0.103 -0.572 0.117 MuHd_075 : 14.442 6.284 3.089 2.724 MuHd_095 : 16.081 12.000 4.559 3.091 MuHd_100 : 9.362 6.096 3.015 2.149 MuHd_105 : 15.545 1.944 3.907 2.021 Hmax_075 : 9.450 14.933 1.295 5.133 Hmax_095 : 6.825 14.100 0.565 4.515 Hmax_100 : 7.000 14.100 0.421 4.540 Hmax_105 : 7.233 11.433 0.421 4.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9898 0.0102 DFMC : 0.9918 0.0082
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 195 PF3D7_1470900 MDTLIGLRGNNFVVLAADTYSINSIIKLKNDDNTKFYDIHGNKCLLLGGSIGDRLQFGEFIRKNVHLYQYQNNTDMFVKS 80 FAFFTRKNLAYYLRRNPFEVNCLIAGYDKKDGYQLYWCDYLSNMDSVNKGAHGYGAYLVSAILDKYYHENLTVDEALDIF 160 KLCFEELKKRFLLTQINYELRIMYDNKVETQYVTV 240 ................................................................................ 80 ................................................................................ 160 ................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1470900 8 DTLIGLR|GN 0.070 . PF3D7_1470900 27 SINSIIK|LK 0.062 . PF3D7_1470900 29 NSIIKLK|ND 0.060 . PF3D7_1470900 35 KNDDNTK|FY 0.069 . PF3D7_1470900 43 YDIHGNK|CL 0.059 . PF3D7_1470900 54 GGSIGDR|LQ 0.080 . PF3D7_1470900 62 QFGEFIR|KN 0.073 . PF3D7_1470900 63 FGEFIRK|NV 0.094 . PF3D7_1470900 79 NTDMFVK|SF 0.066 . PF3D7_1470900 86 SFAFFTR|KN 0.091 . PF3D7_1470900 87 FAFFTRK|NL 0.075 . PF3D7_1470900 94 NLAYYLR|RN 0.076 . PF3D7_1470900 95 LAYYLRR|NP 0.110 . PF3D7_1470900 109 LIAGYDK|KD 0.068 . PF3D7_1470900 110 IAGYDKK|DG 0.111 . PF3D7_1470900 129 NMDSVNK|GA 0.075 . PF3D7_1470900 145 VSAILDK|YY 0.073 . PF3D7_1470900 161 EALDIFK|LC 0.058 . PF3D7_1470900 168 LCFEELK|KR 0.054 . PF3D7_1470900 169 CFEELKK|RF 0.062 . PF3D7_1470900 170 FEELKKR|FL 0.221 . PF3D7_1470900 181 QINYELR|IM 0.083 . PF3D7_1470900 187 RIMYDNK|VE 0.063 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1470900 ATGGATACGTTGATTGGTTTAAGAGGAAACAATTTCGTAGTCCTGGCTGCTGATACATAT AGCATAAATTCAATAATTAAATTAAAAAATGATGACAACACAAAATTTTATGATATACAT GGAAATAAATGTTTATTACTAGGAGGTTCGATAGGAGACAGATTACAATTTGGAGAATTC ATTCGTAAAAATGTGCACTTGTATCAGTATCAAAATAATACAGATATGTTTGTTAAAAGT TTTGCTTTTTTTACAAGAAAAAATTTGGCTTACTACTTGAGAAGAAACCCTTTTGAAGTT AATTGTCTGATAGCTGGATATGATAAGAAGGATGGATATCAACTATACTGGTGTGATTAT TTAAGTAATATGGATTCTGTTAATAAAGGTGCTCATGGATACGGAGCCTATTTAGTGAGC GCAATATTAGATAAATATTATCATGAAAATCTAACAGTTGATGAGGCCTTAGATATATTC AAATTATGTTTTGAAGAATTGAAAAAAAGGTTTCTATTAACTCAAATTAACTACGAACTA AGAATAATGTACGATAATAAAGTAGAGACACAATATGTAACCGTATAA
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  • Fasta :-

    MDTLIGLRGNNFVVLAADTYSINSIIKLKNDDNTKFYDIHGNKCLLLGGSIGDRLQFGEF IRKNVHLYQYQNNTDMFVKSFAFFTRKNLAYYLRRNPFEVNCLIAGYDKKDGYQLYWCDY LSNMDSVNKGAHGYGAYLVSAILDKYYHENLTVDEALDIFKLCFEELKKRFLLTQINYEL RIMYDNKVETQYVTV

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PF14_0676      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India