PKNH_0110900 | 26S proteasome regulatory subunit RPN10, putative

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_IDPredictionOTHERSPmTPCS_Position
PKNH_0110900OTHER0.9999780.0000220.000001
No Results

  • Fasta :-

    >PKNH_0110900 MSSIEATIICIDNSDYNRNEDIVPNRFLSQIDCVNVLCCNKTSMHYKNNIGIIMMAGDKT KVKVSLTNDIGQLLSCIHDIKLDGTCDIVRSLLIAQLALKHRVDKNLAQKIMLFVGSPFK VNEKQLISTGKQLKKNNICLDIISYGDIHTNRDILMMLYNSVNSNDNCKFIECPETENNL SRFVLNSLLNNNDYNIENIQEDDQLMSAMQMSLGENQQLNDQKNVSTSGGIIYTSNNSDL PTIEEIENMKDIDNELKEALILSLKEYYEKNKTENANQEDGEGDGKKEVKEGDDVSDHVS DDVLDEAADEANNQAVPSNEDNPIGTDKPSDDTPFDEKEEENFSLVNESYKNNFDSGDHQ TQVEDAKEKKENESYEKVFKIDKEEGNLQDNTQGGGINEKLYNSEKSVSKENDGVGVSSE NQDGGDAPSTTHIQDTSYISSILGKINATVNVFSGEKSDEKEKESADKGDASSGEDQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0110900.fa Sequence name : PKNH_0110900 Sequence length : 477 VALUES OF COMPUTED PARAMETERS Coef20 : 3.842 CoefTot : 0.224 ChDiff : -46 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.541 1.035 -0.070 0.390 MesoH : -0.853 0.414 -0.381 0.151 MuHd_075 : 10.709 8.985 4.030 2.788 MuHd_095 : 2.313 8.456 2.878 4.053 MuHd_100 : 9.308 7.295 3.123 2.343 MuHd_105 : 20.634 7.009 5.140 0.475 Hmax_075 : -4.200 5.483 -1.302 1.528 Hmax_095 : -2.275 7.100 -0.127 3.460 Hmax_100 : -1.700 6.700 0.678 2.300 Hmax_105 : 5.800 9.400 1.439 2.110 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9725 0.0275 DFMC : 0.9458 0.0542
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 477 PKNH_0110900 MSSIEATIICIDNSDYNRNEDIVPNRFLSQIDCVNVLCCNKTSMHYKNNIGIIMMAGDKTKVKVSLTNDIGQLLSCIHDI 80 KLDGTCDIVRSLLIAQLALKHRVDKNLAQKIMLFVGSPFKVNEKQLISTGKQLKKNNICLDIISYGDIHTNRDILMMLYN 160 SVNSNDNCKFIECPETENNLSRFVLNSLLNNNDYNIENIQEDDQLMSAMQMSLGENQQLNDQKNVSTSGGIIYTSNNSDL 240 PTIEEIENMKDIDNELKEALILSLKEYYEKNKTENANQEDGEGDGKKEVKEGDDVSDHVSDDVLDEAADEANNQAVPSNE 320 DNPIGTDKPSDDTPFDEKEEENFSLVNESYKNNFDSGDHQTQVEDAKEKKENESYEKVFKIDKEEGNLQDNTQGGGINEK 400 LYNSEKSVSKENDGVGVSSENQDGGDAPSTTHIQDTSYISSILGKINATVNVFSGEKSDEKEKESADKGDASSGEDQ 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0110900 18 DNSDYNR|NE 0.096 . PKNH_0110900 26 EDIVPNR|FL 0.136 . PKNH_0110900 41 NVLCCNK|TS 0.054 . PKNH_0110900 47 KTSMHYK|NN 0.110 . PKNH_0110900 59 IMMAGDK|TK 0.054 . PKNH_0110900 61 MAGDKTK|VK 0.061 . PKNH_0110900 63 GDKTKVK|VS 0.064 . PKNH_0110900 81 SCIHDIK|LD 0.064 . PKNH_0110900 90 GTCDIVR|SL 0.112 . PKNH_0110900 100 IAQLALK|HR 0.057 . PKNH_0110900 102 QLALKHR|VD 0.074 . PKNH_0110900 105 LKHRVDK|NL 0.223 . PKNH_0110900 110 DKNLAQK|IM 0.060 . PKNH_0110900 120 FVGSPFK|VN 0.065 . PKNH_0110900 124 PFKVNEK|QL 0.064 . PKNH_0110900 131 QLISTGK|QL 0.070 . PKNH_0110900 134 STGKQLK|KN 0.069 . PKNH_0110900 135 TGKQLKK|NN 0.086 . PKNH_0110900 152 GDIHTNR|DI 0.123 . PKNH_0110900 169 NSNDNCK|FI 0.084 . PKNH_0110900 182 TENNLSR|FV 0.177 . PKNH_0110900 223 QQLNDQK|NV 0.093 . PKNH_0110900 250 EEIENMK|DI 0.081 . PKNH_0110900 257 DIDNELK|EA 0.054 . PKNH_0110900 265 ALILSLK|EY 0.060 . PKNH_0110900 270 LKEYYEK|NK 0.061 . PKNH_0110900 272 EYYEKNK|TE 0.063 . PKNH_0110900 286 DGEGDGK|KE 0.057 . PKNH_0110900 287 GEGDGKK|EV 0.174 . PKNH_0110900 290 DGKKEVK|EG 0.070 . PKNH_0110900 328 NPIGTDK|PS 0.074 . PKNH_0110900 338 DTPFDEK|EE 0.053 . PKNH_0110900 351 LVNESYK|NN 0.080 . PKNH_0110900 367 TQVEDAK|EK 0.069 . PKNH_0110900 369 VEDAKEK|KE 0.058 . PKNH_0110900 370 EDAKEKK|EN 0.134 . PKNH_0110900 377 ENESYEK|VF 0.053 . PKNH_0110900 380 SYEKVFK|ID 0.063 . PKNH_0110900 383 KVFKIDK|EE 0.060 . PKNH_0110900 400 GGGINEK|LY 0.059 . PKNH_0110900 406 KLYNSEK|SV 0.152 . PKNH_0110900 410 SEKSVSK|EN 0.075 . PKNH_0110900 445 ISSILGK|IN 0.077 . PKNH_0110900 457 NVFSGEK|SD 0.069 . PKNH_0110900 461 GEKSDEK|EK 0.062 . PKNH_0110900 463 KSDEKEK|ES 0.067 . PKNH_0110900 468 EKESADK|GD 0.068 . ____________________________^_________________

  • Fasta :-

    >PKNH_0110900 ATGAGTTCCATCGAGGCGACCATCATCTGCATTGACAACAGTGACTACAACAGGAATGAG GACATCGTGCCGAATAGGTTTCTCTCGCAGATCGACTGCGTGAACGTGCTCTGTTGTAAC AAGACGAGCATGCACTACAAAAACAACATCGGAATAATAATGATGGCAGGAGACAAGACA AAAGTGAAGGTGTCCCTGACAAATGACATAGGGCAACTACTCTCCTGTATCCACGACATT AAGTTGGACGGCACATGTGACATCGTGAGAAGTCTACTGATCGCCCAGCTTGCCCTGAAG CATCGCGTGGACAAAAATCTGGCGCAAAAAATTATGCTCTTTGTAGGGAGCCCCTTCAAA GTTAATGAAAAACAACTAATCAGTACAGGTAAACAGTTAAAGAAAAACAACATCTGTCTA GATATAATTAGTTATGGAGACATACACACAAATAGAGATATCCTGATGATGTTATACAAC AGCGTAAATAGCAATGACAACTGTAAATTCATTGAGTGTCCTGAAACGGAGAACAACCTT AGCAGATTTGTTCTGAATTCTTTACTTAACAATAACGATTATAATATTGAAAATATCCAG GAGGATGATCAATTAATGAGTGCTATGCAAATGTCTCTGGGGGAAAATCAACAATTAAAT GATCAGAAAAATGTTTCTACCTCCGGTGGTATTATCTACACTTCTAATAACAGTGACTTA CCCACTATTGAAGAAATTGAAAATATGAAAGACATTGATAATGAGTTGAAGGAGGCCTTA ATTTTATCGCTCAAGGAATATTATGAGAAGAACAAGACGGAAAATGCCAATCAGGAGGAT GGTGAAGGGGATGGCAAAAAGGAAGTCAAAGAGGGAGATGATGTATCAGACCATGTATCA GACGATGTGTTAGACGAAGCGGCAGACGAAGCGAATAATCAGGCTGTTCCATCAAATGAA GACAACCCCATCGGAACAGACAAACCAAGTGATGACACCCCCTTTGATGAAAAAGAAGAA GAAAATTTTTCCCTCGTAAATGAGAGCTATAAAAACAACTTTGACAGTGGAGACCATCAG ACACAGGTCGAAGATGCCAAGGAGAAAAAAGAAAACGAGAGCTACGAGAAGGTGTTCAAA ATAGATAAAGAGGAAGGTAACTTGCAGGATAACACTCAAGGGGGTGGCATAAATGAAAAG TTGTATAATTCGGAGAAGAGCGTTTCAAAAGAGAATGATGGGGTGGGTGTGTCCAGTGAG AATCAGGATGGTGGTGATGCTCCTTCGACCACGCATATTCAGGACACCAGCTATATTTCC AGCATCCTCGGGAAGATTAACGCAACTGTGAATGTGTTCAGCGGTGAAAAATCGGACGAA AAGGAGAAGGAGTCGGCGGACAAGGGGGACGCCTCCTCCGGGGAGGATCAGTAG
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  • Fasta :-

    MSSIEATIICIDNSDYNRNEDIVPNRFLSQIDCVNVLCCNKTSMHYKNNIGIIMMAGDKT KVKVSLTNDIGQLLSCIHDIKLDGTCDIVRSLLIAQLALKHRVDKNLAQKIMLFVGSPFK VNEKQLISTGKQLKKNNICLDIISYGDIHTNRDILMMLYNSVNSNDNCKFIECPETENNL SRFVLNSLLNNNDYNIENIQEDDQLMSAMQMSLGENQQLNDQKNVSTSGGIIYTSNNSDL PTIEEIENMKDIDNELKEALILSLKEYYEKNKTENANQEDGEGDGKKEVKEGDDVSDHVS DDVLDEAADEANNQAVPSNEDNPIGTDKPSDDTPFDEKEEENFSLVNESYKNNFDSGDHQ TQVEDAKEKKENESYEKVFKIDKEEGNLQDNTQGGGINEKLYNSEKSVSKENDGVGVSSE NQDGGDAPSTTHIQDTSYISSILGKINATVNVFSGEKSDEKEKESADKGDASSGEDQ

  • title: metal ion-dependent adhesion site (MIDAS)
  • coordinates: D12,C86,G116
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_0110900349 SLVNESYKNN0.992unspPKNH_0110900349 SLVNESYKNN0.992unspPKNH_0110900349 SLVNESYKNN0.992unspPKNH_0110900409 SEKSVSKEND0.996unspPKNH_0110900454 SVNVFSGEKS0.991unspPKNH_0110900458 SSGEKSDEKE0.991unspPKNH_0110900473 SGDASSGEDQ0.998unspPKNH_011090029 SNRFLSQIDC0.993unspPKNH_0110900318 SQAVPSNEDN0.994unsp

PK8_0710c      PKH_011040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India