PKNH_0111000 | serine protease DegP, putative

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_IDPredictionOTHERSPmTPCS_Position
PKNH_0111000SP0.0306040.9686190.000777CS pos: 16-17. VAA-LL. Pr: 0.6354
No Results

  • Fasta :-

    >PKNH_0111000 MKLSLLSYSFCASVAALLIIRDEGDTSGSFFASCAAWPMGERAPRTDGTNYTHHNRGELT TEIGLEEEHLYNDTETQGGDDSELVFNKRTPSVRSKSSTVDPPFVKYVPAYVNLPVNYKP VAKMNAAGGEEESGLPLSDIYKEGDHHPSERTKDGQYDPSIQQYEVSFKNNTVEGEYPSE SNYQVQEEPLSGAPNTWRRKKKKKTLDHRMNLIEHNLKDYSPMKDQLIHRKPLNSYISNF YDGTSDKSVQHRIGKIKLSTHRNDRRMIKDILTPQTVKVMKEYLLKRRKKYGNEKIQHLV DSSSDQMYREDSASLGNSWKGSIKVSHPLRFFPASFPLHTPMTANQGEAKR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0111000.fa Sequence name : PKNH_0111000 Sequence length : 351 VALUES OF COMPUTED PARAMETERS Coef20 : 4.957 CoefTot : 1.346 ChDiff : 4 ZoneTo : 21 KR : 2 DE : 0 CleavSite : 23 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.894 2.035 0.431 0.658 MesoH : -1.105 -0.263 -0.497 0.064 MuHd_075 : 17.442 16.059 4.080 5.150 MuHd_095 : 9.010 10.646 4.390 2.513 MuHd_100 : 10.928 10.147 4.846 2.938 MuHd_105 : 13.756 8.766 4.819 3.532 Hmax_075 : 19.700 25.400 5.688 7.920 Hmax_095 : 16.800 19.775 4.654 5.801 Hmax_100 : 18.100 21.400 4.704 5.220 Hmax_105 : 17.033 17.733 3.962 6.113 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9421 0.0579 DFMC : 0.9055 0.0945
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 351 PKNH_0111000 MKLSLLSYSFCASVAALLIIRDEGDTSGSFFASCAAWPMGERAPRTDGTNYTHHNRGELTTEIGLEEEHLYNDTETQGGD 80 DSELVFNKRTPSVRSKSSTVDPPFVKYVPAYVNLPVNYKPVAKMNAAGGEEESGLPLSDIYKEGDHHPSERTKDGQYDPS 160 IQQYEVSFKNNTVEGEYPSESNYQVQEEPLSGAPNTWRRKKKKKTLDHRMNLIEHNLKDYSPMKDQLIHRKPLNSYISNF 240 YDGTSDKSVQHRIGKIKLSTHRNDRRMIKDILTPQTVKVMKEYLLKRRKKYGNEKIQHLVDSSSDQMYREDSASLGNSWK 320 GSIKVSHPLRFFPASFPLHTPMTANQGEAKR 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0111000 2 -----MK|LS 0.056 . PKNH_0111000 21 AALLIIR|DE 0.088 . PKNH_0111000 42 AWPMGER|AP 0.071 . PKNH_0111000 45 MGERAPR|TD 0.347 . PKNH_0111000 56 NYTHHNR|GE 0.082 . PKNH_0111000 88 SELVFNK|RT 0.061 . PKNH_0111000 89 ELVFNKR|TP 0.119 . PKNH_0111000 94 KRTPSVR|SK 0.152 . PKNH_0111000 96 TPSVRSK|SS 0.115 . PKNH_0111000 106 VDPPFVK|YV 0.075 . PKNH_0111000 119 NLPVNYK|PV 0.070 . PKNH_0111000 123 NYKPVAK|MN 0.078 . PKNH_0111000 142 PLSDIYK|EG 0.066 . PKNH_0111000 151 DHHPSER|TK 0.123 . PKNH_0111000 153 HPSERTK|DG 0.078 . PKNH_0111000 169 QYEVSFK|NN 0.066 . PKNH_0111000 198 GAPNTWR|RK 0.077 . PKNH_0111000 199 APNTWRR|KK 0.185 . PKNH_0111000 200 PNTWRRK|KK 0.077 . PKNH_0111000 201 NTWRRKK|KK 0.287 . PKNH_0111000 202 TWRRKKK|KK 0.384 . PKNH_0111000 203 WRRKKKK|KT 0.204 . PKNH_0111000 204 RRKKKKK|TL 0.200 . PKNH_0111000 209 KKTLDHR|MN 0.076 . PKNH_0111000 218 LIEHNLK|DY 0.079 . PKNH_0111000 224 KDYSPMK|DQ 0.068 . PKNH_0111000 230 KDQLIHR|KP 0.074 . PKNH_0111000 231 DQLIHRK|PL 0.088 . PKNH_0111000 247 YDGTSDK|SV 0.102 . PKNH_0111000 252 DKSVQHR|IG 0.140 . PKNH_0111000 255 VQHRIGK|IK 0.094 . PKNH_0111000 257 HRIGKIK|LS 0.069 . PKNH_0111000 262 IKLSTHR|ND 0.081 . PKNH_0111000 265 STHRNDR|RM 0.227 . PKNH_0111000 266 THRNDRR|MI 0.229 . PKNH_0111000 269 NDRRMIK|DI 0.193 . PKNH_0111000 278 LTPQTVK|VM 0.052 . PKNH_0111000 281 QTVKVMK|EY 0.061 . PKNH_0111000 286 MKEYLLK|RR 0.059 . PKNH_0111000 287 KEYLLKR|RK 0.126 . PKNH_0111000 288 EYLLKRR|KK 0.115 . PKNH_0111000 289 YLLKRRK|KY 0.085 . PKNH_0111000 290 LLKRRKK|YG 0.393 . PKNH_0111000 295 KKYGNEK|IQ 0.064 . PKNH_0111000 309 SSDQMYR|ED 0.116 . PKNH_0111000 320 SLGNSWK|GS 0.076 . PKNH_0111000 324 SWKGSIK|VS 0.065 . PKNH_0111000 330 KVSHPLR|FF 0.131 . PKNH_0111000 350 ANQGEAK|R- 0.068 . PKNH_0111000 351 NQGEAKR|-- 0.174 . ____________________________^_________________

  • Fasta :-

    >PKNH_0111000 ATGAAGTTGTCTCTGCTGAGTTATTCATTCTGTGCGTCTGTCGCAGCGCTCCTGATTATA CGGGATGAGGGTGACACCTCGGGTAGCTTCTTTGCTTCGTGCGCTGCTTGGCCGATGGGT GAAAGGGCACCCCGGACTGACGGTACCAACTACACACATCATAACAGGGGGGAGTTAACA ACAGAGATTGGACTGGAGGAGGAGCATCTTTACAACGATACAGAAACGCAGGGAGGAGAT GACTCTGAACTTGTATTCAATAAAAGGACACCAAGTGTTCGGAGTAAAAGTAGCACAGTA GATCCTCCCTTCGTTAAATACGTTCCCGCGTATGTTAATCTGCCCGTGAATTACAAACCA GTGGCTAAAATGAATGCAGCTGGTGGAGAAGAAGAGAGCGGACTCCCCCTTAGCGATATA TACAAGGAGGGCGATCATCACCCGAGTGAACGCACAAAGGATGGACAGTACGATCCTTCA ATACAACAGTATGAAGTCTCATTTAAAAATAATACCGTAGAAGGTGAATACCCTAGTGAA AGCAACTACCAAGTTCAGGAGGAACCTCTCTCTGGTGCACCTAACACATGGAGGCGAAAA AAAAAAAAAAAAACCTTAGACCACAGAATGAATTTAATAGAACACAATCTGAAGGACTAC TCACCAATGAAGGATCAGCTCATTCACAGAAAACCGTTAAACTCATATATAAGTAACTTC TATGATGGTACCTCAGACAAGTCTGTACAACATCGAATAGGAAAAATCAAACTCAGTACC CACAGGAACGATAGAAGAATGATAAAAGATATTCTCACCCCACAGACGGTTAAAGTTATG AAAGAGTACCTACTGAAGAGGAGAAAAAAATATGGAAATGAAAAAATCCAGCATTTAGTG GATTCGTCCTCAGATCAGATGTACAGGGAAGATAGTGCCTCCTTGGGAAATAGCTGGAAG GGTAGCATAAAAGTGAGTCATCCGTTGAGATTCTTTCCAGCGAGCTTTCCTCTCCACACT CCGATGACAGCAAACCAGGGAGAAGCCAAGAGGTGA
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  • Fasta :-

    MKLSLLSYSFCASVAALLIIRDEGDTSGSFFASCAAWPMGERAPRTDGTNYTHHNRGELT TEIGLEEEHLYNDTETQGGDDSELVFNKRTPSVRSKSSTVDPPFVKYVPAYVNLPVNYKP VAKMNAAGGEEESGLPLSDIYKEGDHHPSERTKDGQYDPSIQQYEVSFKNNTVEGEYPSE SNYQVQEEPLSGAPNTWRRKKKKKTLDHRMNLIEHNLKDYSPMKDQLIHRKPLNSYISNF YDGTSDKSVQHRIGKIKLSTHRNDRRMIKDILTPQTVKVMKEYLLKRRKKYGNEKIQHLV DSSSDQMYREDSASLGNSWKGSIKVSHPLRFFPASFPLHTPMTANQGEAKR

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_011100098 SRSKSSTVDP0.995unspPKNH_011100098 SRSKSSTVDP0.995unspPKNH_011100098 SRSKSSTVDP0.995unspPKNH_011100095 SPSVRSKSST0.991unspPKNH_011100097 SVRSKSSTVD0.992unsp

PK8_0700c      PKH_011050      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India