PKNH_0212000 | proteasome subunit alpha type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0212000OTHER0.9993790.0002240.000397
No Results

  • Fasta :-

    >PKNH_0212000 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRIASTLIE KSSVEKLLPIDDHIGCAMSGLMADARTLIDYARVECNHYKFIYNENINIKSCVELISELA LDFSNLSDNKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFLAASIGSAQEGAE LLLQENYNKNMTFEEAEILALTVLRQVMEDKLSSSNVEIAAIKKSDQTFYKYNTDDISRI IEALPSPIYPTIDMTA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0212000.fa Sequence name : PKNH_0212000 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.827 CoefTot : 0.359 ChDiff : -8 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.506 0.243 0.551 MesoH : -0.644 0.530 -0.303 0.219 MuHd_075 : 26.581 14.114 5.973 6.050 MuHd_095 : 22.151 12.185 5.897 4.710 MuHd_100 : 16.896 13.422 4.329 4.470 MuHd_105 : 11.946 13.520 3.115 4.358 Hmax_075 : 3.063 1.575 -1.476 2.135 Hmax_095 : 11.800 5.700 0.856 3.450 Hmax_100 : 3.000 3.000 -1.467 2.890 Hmax_105 : -5.775 2.400 -3.727 1.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8134 0.1866 DFMC : 0.8328 0.1672
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PKNH_0212000 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRIASTLIEKSSVEKLLPIDDHIGCAMSG 80 LMADARTLIDYARVECNHYKFIYNENINIKSCVELISELALDFSNLSDNKRKKIMSRPFGVALLIGGVDKNGPCLWYTEP 160 SGTNTRFLAASIGSAQEGAELLLQENYNKNMTFEEAEILALTVLRQVMEDKLSSSNVEIAAIKKSDQTFYKYNTDDISRI 240 IEALPSPIYPTIDMTA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0212000 5 --MFSTR|SE 0.129 . PKNH_0212000 10 TRSEYDR|GV 0.202 . PKNH_0212000 20 TFSPEGR|LF 0.104 . PKNH_0212000 32 YALGAIK|LG 0.060 . PKNH_0212000 52 VILASER|RI 0.070 . PKNH_0212000 53 ILASERR|IA 0.179 . PKNH_0212000 61 ASTLIEK|SS 0.065 . PKNH_0212000 66 EKSSVEK|LL 0.066 . PKNH_0212000 86 GLMADAR|TL 0.113 . PKNH_0212000 93 TLIDYAR|VE 0.082 . PKNH_0212000 100 VECNHYK|FI 0.078 . PKNH_0212000 110 NENINIK|SC 0.076 . PKNH_0212000 130 SNLSDNK|RK 0.052 . PKNH_0212000 131 NLSDNKR|KK 0.200 . PKNH_0212000 132 LSDNKRK|KI 0.100 . PKNH_0212000 133 SDNKRKK|IM 0.141 . PKNH_0212000 137 RKKIMSR|PF 0.130 . PKNH_0212000 150 LIGGVDK|NG 0.057 . PKNH_0212000 166 PSGTNTR|FL 0.113 . PKNH_0212000 189 LQENYNK|NM 0.059 . PKNH_0212000 205 LALTVLR|QV 0.101 . PKNH_0212000 211 RQVMEDK|LS 0.065 . PKNH_0212000 223 VEIAAIK|KS 0.059 . PKNH_0212000 224 EIAAIKK|SD 0.114 . PKNH_0212000 231 SDQTFYK|YN 0.080 . PKNH_0212000 239 NTDDISR|II 0.082 . ____________________________^_________________

  • Fasta :-

    >PKNH_0212000 ATGTTTTCAACCAGGAGCGAGTATGACCGGGGAGTAAACACCTTTTCGCCAGAAGGCAGA CTTTTTCAAGTGGAGTACGCGCTGGGCGCTATAAAGCTGGGTAGCACTGCAGTCGGTATC TGCGTAAACGATGGAGTGATCTTGGCCTCAGAAAGAAGAATCGCCTCCACATTAATAGAA AAATCTTCAGTGGAGAAGCTACTTCCAATAGATGACCACATAGGATGTGCCATGAGTGGA CTCATGGCGGACGCAAGGACACTAATAGACTACGCAAGGGTCGAGTGCAATCATTACAAG TTCATATATAATGAAAATATAAACATAAAATCTTGTGTAGAATTAATATCGGAGTTAGCA TTAGATTTTTCTAACTTGTCTGACAATAAAAGGAAGAAAATAATGAGCAGACCATTTGGC GTTGCCTTACTGATAGGAGGAGTCGATAAGAATGGTCCTTGTCTTTGGTACACGGAACCA TCTGGAACGAACACGAGATTTTTAGCTGCTTCCATTGGCTCTGCTCAAGAAGGGGCAGAA TTGTTACTACAAGAAAATTACAATAAAAATATGACCTTTGAGGAAGCTGAGATTTTGGCG CTCACCGTTTTAAGGCAGGTGATGGAGGATAAGTTGTCTTCCTCCAACGTGGAAATTGCG GCTATTAAGAAATCCGATCAGACGTTTTACAAGTACAATACGGACGACATCTCCAGGATC ATCGAGGCGCTTCCCTCGCCCATCTACCCAACCATCGACATGACCGCTTAG
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  • Fasta :-

    MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRIASTLIE KSSVEKLLPIDDHIGCAMSGLMADARTLIDYARVECNHYKFIYNENINIKSCVELISELA LDFSNLSDNKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFLAASIGSAQEGAE LLLQENYNKNMTFEEAEILALTVLRQVMEDKLSSSNVEIAAIKKSDQTFYKYNTDDISRI IEALPSPIYPTIDMTA

  • title: active site
  • coordinates: S35,E51,R53,K66,S174
No Results
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No Results

PK7_2120w      PKH_021180      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India