PKNH_0314000 | conserved Plasmodium membrane protein, unknown function

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >PKNH_0314000 MFHHFRGRNALHNYLSRCACGKFPPGVIPYRNRWPKVRSLTVLETLRRPHSGYSRRGDPS HTTKHRRDCKGGKADSFKEKHERDGWSERSEKINTEMSLYYPESNSFPFVTTGILLGMVG ISSFFQFLIYTLKFCEDESSILLKVNEFLDHLDAYFIIHDFEGGPGEGHSTRGRDAVKSG LFSIKYLTSPFFANENILQCAVQLSTFFLASRFLEKQFGSLKFGALFISASILSNLLTHN FLKYLTNQVESLNSLNFVLIHPSGSMAFICALCSICFKNCAIWKDIPVHCSILVVPYLLS SFYGLLSLYKIGKNTLENTHGEVAPSERNSLQSVDAKDHPYEDPPHLGMPHTTRSSHAND ITNPLHSSDKEQPNAPPSNKHVQNETMEILRNFLIVKACDEVIKRRKKENMFPNKKIQNL KNESLKNINEINNRSKKIFFGLSSSFTDICGILLASCGSFLFKMLR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0314000.fa Sequence name : PKNH_0314000 Sequence length : 466 VALUES OF COMPUTED PARAMETERS Coef20 : 4.183 CoefTot : -2.113 ChDiff : 14 ZoneTo : 57 KR : 12 DE : 1 CleavSite : 58 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.241 1.947 0.438 0.769 MesoH : 0.560 1.000 -0.043 0.408 MuHd_075 : 42.205 25.476 12.250 9.283 MuHd_095 : 39.061 20.274 8.282 8.233 MuHd_100 : 32.294 17.738 8.388 7.900 MuHd_105 : 38.506 19.937 8.342 9.490 Hmax_075 : 10.600 7.875 3.920 3.970 Hmax_095 : 6.100 10.700 -1.904 3.460 Hmax_100 : 6.100 11.100 2.120 3.760 Hmax_105 : 9.217 9.450 0.700 4.083 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0112 0.9888 DFMC : 0.0235 0.9765 This protein is probably imported in mitochondria. f(Ser) = 0.0702 f(Arg) = 0.1754 CMi = 0.22235 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 466 PKNH_0314000 MFHHFRGRNALHNYLSRCACGKFPPGVIPYRNRWPKVRSLTVLETLRRPHSGYSRRGDPSHTTKHRRDCKGGKADSFKEK 80 HERDGWSERSEKINTEMSLYYPESNSFPFVTTGILLGMVGISSFFQFLIYTLKFCEDESSILLKVNEFLDHLDAYFIIHD 160 FEGGPGEGHSTRGRDAVKSGLFSIKYLTSPFFANENILQCAVQLSTFFLASRFLEKQFGSLKFGALFISASILSNLLTHN 240 FLKYLTNQVESLNSLNFVLIHPSGSMAFICALCSICFKNCAIWKDIPVHCSILVVPYLLSSFYGLLSLYKIGKNTLENTH 320 GEVAPSERNSLQSVDAKDHPYEDPPHLGMPHTTRSSHANDITNPLHSSDKEQPNAPPSNKHVQNETMEILRNFLIVKACD 400 EVIKRRKKENMFPNKKIQNLKNESLKNINEINNRSKKIFFGLSSSFTDICGILLASCGSFLFKMLR 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0314000 6 -MFHHFR|GR 0.090 . PKNH_0314000 8 FHHFRGR|NA 0.102 . PKNH_0314000 17 LHNYLSR|CA 0.123 . PKNH_0314000 22 SRCACGK|FP 0.077 . PKNH_0314000 31 PGVIPYR|NR 0.087 . PKNH_0314000 33 VIPYRNR|WP 0.071 . PKNH_0314000 36 YRNRWPK|VR 0.141 . PKNH_0314000 38 NRWPKVR|SL 0.196 . PKNH_0314000 47 TVLETLR|RP 0.067 . PKNH_0314000 48 VLETLRR|PH 0.096 . PKNH_0314000 55 PHSGYSR|RG 0.094 . PKNH_0314000 56 HSGYSRR|GD 0.161 . PKNH_0314000 64 DPSHTTK|HR 0.079 . PKNH_0314000 66 SHTTKHR|RD 0.114 . PKNH_0314000 67 HTTKHRR|DC 0.262 . PKNH_0314000 70 KHRRDCK|GG 0.119 . PKNH_0314000 73 RDCKGGK|AD 0.081 . PKNH_0314000 78 GKADSFK|EK 0.077 . PKNH_0314000 80 ADSFKEK|HE 0.089 . PKNH_0314000 83 FKEKHER|DG 0.108 . PKNH_0314000 89 RDGWSER|SE 0.141 . PKNH_0314000 92 WSERSEK|IN 0.103 . PKNH_0314000 133 FLIYTLK|FC 0.066 . PKNH_0314000 144 ESSILLK|VN 0.068 . PKNH_0314000 172 GEGHSTR|GR 0.133 . PKNH_0314000 174 GHSTRGR|DA 0.217 . PKNH_0314000 178 RGRDAVK|SG 0.072 . PKNH_0314000 185 SGLFSIK|YL 0.069 . PKNH_0314000 212 TFFLASR|FL 0.126 . PKNH_0314000 216 ASRFLEK|QF 0.072 . PKNH_0314000 222 KQFGSLK|FG 0.057 . PKNH_0314000 243 LTHNFLK|YL 0.082 . PKNH_0314000 278 LCSICFK|NC 0.061 . PKNH_0314000 284 KNCAIWK|DI 0.073 . PKNH_0314000 310 GLLSLYK|IG 0.055 . PKNH_0314000 313 SLYKIGK|NT 0.068 . PKNH_0314000 328 EVAPSER|NS 0.093 . PKNH_0314000 337 LQSVDAK|DH 0.081 . PKNH_0314000 354 GMPHTTR|SS 0.159 . PKNH_0314000 370 PLHSSDK|EQ 0.062 . PKNH_0314000 380 NAPPSNK|HV 0.081 . PKNH_0314000 391 ETMEILR|NF 0.069 . PKNH_0314000 397 RNFLIVK|AC 0.066 . PKNH_0314000 404 ACDEVIK|RR 0.056 . PKNH_0314000 405 CDEVIKR|RK 0.111 . PKNH_0314000 406 DEVIKRR|KK 0.151 . PKNH_0314000 407 EVIKRRK|KE 0.068 . PKNH_0314000 408 VIKRRKK|EN 0.186 . PKNH_0314000 415 ENMFPNK|KI 0.066 . PKNH_0314000 416 NMFPNKK|IQ 0.073 . PKNH_0314000 421 KKIQNLK|NE 0.061 . PKNH_0314000 426 LKNESLK|NI 0.077 . PKNH_0314000 434 INEINNR|SK 0.105 . PKNH_0314000 436 EINNRSK|KI 0.081 . PKNH_0314000 437 INNRSKK|IF 0.366 . PKNH_0314000 463 CGSFLFK|ML 0.076 . PKNH_0314000 466 FLFKMLR|-- 0.083 . ____________________________^_________________

  • Fasta :-

    >PKNH_0314000 ATGTTCCACCATTTCAGGGGGAGGAATGCACTACATAACTACCTATCAAGATGCGCCTGC GGGAAGTTCCCGCCTGGGGTTATCCCCTACAGGAACCGCTGGCCCAAAGTAAGAAGCCTA ACTGTGTTGGAAACTCTGAGAAGACCCCACAGTGGGTACAGTAGAAGGGGCGACCCATCG CACACCACAAAGCATAGAAGGGATTGCAAAGGTGGCAAAGCAGATTCCTTCAAAGAAAAA CATGAAAGGGACGGATGGAGCGAACGCAGTGAAAAAATAAACACAGAAATGTCCCTTTAC TATCCAGAGAGTAACTCCTTCCCATTTGTGACTACCGGCATCTTGTTGGGCATGGTGGGC ATTTCGTCCTTTTTTCAATTTTTAATTTACACCCTGAAATTTTGTGAGGATGAGTCAAGC ATCCTGCTAAAAGTAAACGAGTTCCTGGACCATCTGGATGCCTATTTTATAATTCACGAC TTTGAGGGGGGCCCAGGTGAAGGACACAGTACAAGAGGACGTGACGCCGTGAAGTCTGGC CTCTTCAGCATCAAATATTTGACGTCTCCATTTTTCGCCAATGAAAATATCCTACAATGC GCAGTTCAGCTATCCACCTTCTTTTTGGCCTCGAGATTTCTTGAAAAACAATTTGGGTCC TTAAAATTTGGCGCACTATTCATAAGCGCTTCCATACTTTCTAACCTTCTAACACATAAC TTCTTAAAATACCTTACGAACCAAGTGGAATCATTAAACTCCCTTAACTTTGTTCTTATA CACCCTTCTGGGTCCATGGCTTTCATTTGTGCCTTGTGCTCCATTTGCTTCAAAAATTGC GCCATCTGGAAGGATATCCCAGTCCACTGCTCCATTTTAGTCGTTCCTTATCTTCTTTCT TCCTTCTACGGTCTATTATCTTTGTACAAAATAGGAAAGAATACTTTGGAAAATACTCAC GGGGAGGTTGCTCCCAGTGAGAGGAACTCCCTCCAAAGTGTAGATGCTAAAGACCATCCC TATGAAGATCCCCCACATTTGGGTATGCCCCACACAACAAGGAGCAGCCATGCCAACGAC ATAACTAACCCCCTCCACAGCAGTGACAAAGAACAACCAAATGCCCCCCCCAGTAATAAA CACGTCCAAAATGAAACCATGGAAATTTTAAGGAACTTCCTAATCGTAAAGGCATGTGAT GAAGTTATTAAGAGGCGCAAAAAGGAAAATATGTTTCCAAACAAAAAGATACAGAACCTC AAAAATGAATCGCTTAAAAATATCAACGAAATTAATAACAGGTCGAAGAAAATATTTTTT GGCTTGTCTTCTTCCTTTACTGACATATGTGGCATCCTGCTTGCATCATGCGGGTCTTTC CTTTTTAAAATGCTCAGGTAG
  • Download Fasta

  • Fasta :-

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_0314000326 SEVAPSERNS0.991unspPKNH_0314000326 SEVAPSERNS0.991unspPKNH_0314000326 SEVAPSERNS0.991unspPKNH_031400051 SRRPHSGYSR0.992unspPKNH_031400076 SGKADSFKEK0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India