PKNH_0423300 | conserved protein, unknown function

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No Results
No Results

  • Fasta :-

    >PKNH_0423300 MIAKRLLLGSLASRSFGRYNLLRRKGPIVWTRKFSSSRERTPNFGKKKAQSGNKKIGKED IKSIDQHAGEKSSYSHESDGGSSEGILTHLVSKNGKEQMVGELPKLVLAILQEKSSLPSE KKMLIDQYKRIVCERLEGVSQNNADKKDALNFADIFSTLYLCYMEKIFDLDFVTKVNAAL EVLLSRVGDKKDQIGHRDEREKDVLKDVTINHCMMMFHYLSSLNVKNVTLCNQVGDYIVS NEVPPLVIYHYLECLSLLADSTDRSGKSSLRDYVVPVVEIFLENFYNFNNYLVLRIVHFL HKLSFMDAELFLLLTRKINKNVYRENANRFELCLLARTYALYKRENITFNNYVCEDLLRN LIKYEDNFQNEEDGPVSSHVKNPDNSTSDDFSTPLQNQSANAPDVIEIENVNRQNYPLFK HPLYNDGLNFYAFFVDAKTTNRDKCLERKNNLNLTFVNGNANEKERQVTSTHMSEWHKLF LHDEYKEKDIKNEPFVKLEDTQKGDRQMVEAYNQSLSEDLHFQFNHKKIAQLFEQVSKDM DNVEIDLVTDEEVPTQMDDEAVHQYRKKILYIENYYIGHIFHIVDSLLSLKAHHNCATFK KMENKILNAIKNNELYIIDNFDSDEIKSLLIFLSHTNRNYKEAFIYALTHRMVDLYINNL CQPSTLSTFFYFLLNFTKHRVVKKNRFNHTIRNVIYNSYSWLNDNKIVLNLTTGIDATNA EEKENSDTRRVIKTKNYSLLQVLSMHICKNVYFMSLSTLASLLRSMSYLFFTDANFFNVF IPLFMKHMSDLSNVDILNITQAYNKQKIQNKYFYYLLAKQYQSNRSEETKNADQKIKLIG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0423300.fa Sequence name : PKNH_0423300 Sequence length : 840 VALUES OF COMPUTED PARAMETERS Coef20 : 4.671 CoefTot : -0.951 ChDiff : 4 ZoneTo : 58 KR : 17 DE : 1 CleavSite : 42 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.282 1.412 0.069 0.634 MesoH : 0.027 0.612 -0.303 0.282 MuHd_075 : 51.289 32.750 12.214 12.624 MuHd_095 : 40.337 22.069 12.738 8.548 MuHd_100 : 40.324 19.741 11.700 8.381 MuHd_105 : 36.636 16.678 10.136 7.319 Hmax_075 : 17.150 23.917 4.123 7.000 Hmax_095 : 2.900 3.700 -0.703 2.630 Hmax_100 : 3.300 -0.300 -0.964 2.270 Hmax_105 : -0.000 -0.817 -2.020 4.440 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0054 0.9946 DFMC : 0.0028 0.9972 This protein is probably imported in mitochondria. f(Ser) = 0.1207 f(Arg) = 0.1379 CMi = 0.45872 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 840 PKNH_0423300 MIAKRLLLGSLASRSFGRYNLLRRKGPIVWTRKFSSSRERTPNFGKKKAQSGNKKIGKEDIKSIDQHAGEKSSYSHESDG 80 GSSEGILTHLVSKNGKEQMVGELPKLVLAILQEKSSLPSEKKMLIDQYKRIVCERLEGVSQNNADKKDALNFADIFSTLY 160 LCYMEKIFDLDFVTKVNAALEVLLSRVGDKKDQIGHRDEREKDVLKDVTINHCMMMFHYLSSLNVKNVTLCNQVGDYIVS 240 NEVPPLVIYHYLECLSLLADSTDRSGKSSLRDYVVPVVEIFLENFYNFNNYLVLRIVHFLHKLSFMDAELFLLLTRKINK 320 NVYRENANRFELCLLARTYALYKRENITFNNYVCEDLLRNLIKYEDNFQNEEDGPVSSHVKNPDNSTSDDFSTPLQNQSA 400 NAPDVIEIENVNRQNYPLFKHPLYNDGLNFYAFFVDAKTTNRDKCLERKNNLNLTFVNGNANEKERQVTSTHMSEWHKLF 480 LHDEYKEKDIKNEPFVKLEDTQKGDRQMVEAYNQSLSEDLHFQFNHKKIAQLFEQVSKDMDNVEIDLVTDEEVPTQMDDE 560 AVHQYRKKILYIENYYIGHIFHIVDSLLSLKAHHNCATFKKMENKILNAIKNNELYIIDNFDSDEIKSLLIFLSHTNRNY 640 KEAFIYALTHRMVDLYINNLCQPSTLSTFFYFLLNFTKHRVVKKNRFNHTIRNVIYNSYSWLNDNKIVLNLTTGIDATNA 720 EEKENSDTRRVIKTKNYSLLQVLSMHICKNVYFMSLSTLASLLRSMSYLFFTDANFFNVFIPLFMKHMSDLSNVDILNIT 800 QAYNKQKIQNKYFYYLLAKQYQSNRSEETKNADQKIKLIG 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ........................................ 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0423300 4 ---MIAK|RL 0.057 . PKNH_0423300 5 --MIAKR|LL 0.174 . PKNH_0423300 14 LGSLASR|SF 0.130 . PKNH_0423300 18 ASRSFGR|YN 0.095 . PKNH_0423300 23 GRYNLLR|RK 0.139 . PKNH_0423300 24 RYNLLRR|KG 0.098 . PKNH_0423300 25 YNLLRRK|GP 0.069 . PKNH_0423300 32 GPIVWTR|KF 0.116 . PKNH_0423300 33 PIVWTRK|FS 0.099 . PKNH_0423300 38 RKFSSSR|ER 0.087 . PKNH_0423300 40 FSSSRER|TP 0.088 . PKNH_0423300 46 RTPNFGK|KK 0.064 . PKNH_0423300 47 TPNFGKK|KA 0.156 . PKNH_0423300 48 PNFGKKK|AQ 0.123 . PKNH_0423300 54 KAQSGNK|KI 0.071 . PKNH_0423300 55 AQSGNKK|IG 0.105 . PKNH_0423300 58 GNKKIGK|ED 0.080 . PKNH_0423300 62 IGKEDIK|SI 0.091 . PKNH_0423300 71 DQHAGEK|SS 0.077 . PKNH_0423300 93 LTHLVSK|NG 0.063 . PKNH_0423300 96 LVSKNGK|EQ 0.073 . PKNH_0423300 105 MVGELPK|LV 0.082 . PKNH_0423300 114 LAILQEK|SS 0.077 . PKNH_0423300 121 SSLPSEK|KM 0.060 . PKNH_0423300 122 SLPSEKK|ML 0.114 . PKNH_0423300 129 MLIDQYK|RI 0.066 . PKNH_0423300 130 LIDQYKR|IV 0.207 . PKNH_0423300 135 KRIVCER|LE 0.119 . PKNH_0423300 146 SQNNADK|KD 0.061 . PKNH_0423300 147 QNNADKK|DA 0.170 . PKNH_0423300 166 YLCYMEK|IF 0.060 . PKNH_0423300 175 DLDFVTK|VN 0.063 . PKNH_0423300 186 LEVLLSR|VG 0.076 . PKNH_0423300 190 LSRVGDK|KD 0.067 . PKNH_0423300 191 SRVGDKK|DQ 0.135 . PKNH_0423300 197 KDQIGHR|DE 0.099 . PKNH_0423300 200 IGHRDER|EK 0.223 . PKNH_0423300 202 HRDEREK|DV 0.091 . PKNH_0423300 206 REKDVLK|DV 0.093 . PKNH_0423300 226 LSSLNVK|NV 0.077 . PKNH_0423300 264 LADSTDR|SG 0.097 . PKNH_0423300 267 STDRSGK|SS 0.165 . PKNH_0423300 271 SGKSSLR|DY 0.084 . PKNH_0423300 295 NNYLVLR|IV 0.112 . PKNH_0423300 302 IVHFLHK|LS 0.059 . PKNH_0423300 316 LFLLLTR|KI 0.071 . PKNH_0423300 317 FLLLTRK|IN 0.069 . PKNH_0423300 320 LTRKINK|NV 0.075 . PKNH_0423300 324 INKNVYR|EN 0.094 . PKNH_0423300 329 YRENANR|FE 0.084 . PKNH_0423300 337 ELCLLAR|TY 0.073 . PKNH_0423300 343 RTYALYK|RE 0.057 . PKNH_0423300 344 TYALYKR|EN 0.152 . PKNH_0423300 359 VCEDLLR|NL 0.093 . PKNH_0423300 363 LLRNLIK|YE 0.087 . PKNH_0423300 381 PVSSHVK|NP 0.065 . PKNH_0423300 413 EIENVNR|QN 0.090 . PKNH_0423300 420 QNYPLFK|HP 0.057 . PKNH_0423300 438 AFFVDAK|TT 0.061 . PKNH_0423300 442 DAKTTNR|DK 0.089 . PKNH_0423300 444 KTTNRDK|CL 0.063 . PKNH_0423300 448 RDKCLER|KN 0.082 . PKNH_0423300 449 DKCLERK|NN 0.067 . PKNH_0423300 464 NGNANEK|ER 0.058 . PKNH_0423300 466 NANEKER|QV 0.153 . PKNH_0423300 478 HMSEWHK|LF 0.065 . PKNH_0423300 486 FLHDEYK|EK 0.068 . PKNH_0423300 488 HDEYKEK|DI 0.079 . PKNH_0423300 491 YKEKDIK|NE 0.053 . PKNH_0423300 497 KNEPFVK|LE 0.063 . PKNH_0423300 503 KLEDTQK|GD 0.067 . PKNH_0423300 506 DTQKGDR|QM 0.074 . PKNH_0423300 527 HFQFNHK|KI 0.072 . PKNH_0423300 528 FQFNHKK|IA 0.108 . PKNH_0423300 538 LFEQVSK|DM 0.079 . PKNH_0423300 566 EAVHQYR|KK 0.087 . PKNH_0423300 567 AVHQYRK|KI 0.083 . PKNH_0423300 568 VHQYRKK|IL 0.108 . PKNH_0423300 591 DSLLSLK|AH 0.056 . PKNH_0423300 600 HNCATFK|KM 0.071 . PKNH_0423300 601 NCATFKK|ME 0.144 . PKNH_0423300 605 FKKMENK|IL 0.077 . PKNH_0423300 611 KILNAIK|NN 0.063 . PKNH_0423300 627 FDSDEIK|SL 0.087 . PKNH_0423300 638 FLSHTNR|NY 0.094 . PKNH_0423300 641 HTNRNYK|EA 0.175 . PKNH_0423300 651 IYALTHR|MV 0.138 . PKNH_0423300 678 FLLNFTK|HR 0.057 . PKNH_0423300 680 LNFTKHR|VV 0.140 . PKNH_0423300 683 TKHRVVK|KN 0.162 . PKNH_0423300 684 KHRVVKK|NR 0.099 . PKNH_0423300 686 RVVKKNR|FN 0.152 . PKNH_0423300 692 RFNHTIR|NV 0.115 . PKNH_0423300 706 SWLNDNK|IV 0.067 . PKNH_0423300 723 ATNAEEK|EN 0.075 . PKNH_0423300 729 KENSDTR|RV 0.113 . PKNH_0423300 730 ENSDTRR|VI 0.232 . PKNH_0423300 733 DTRRVIK|TK 0.140 . PKNH_0423300 735 RRVIKTK|NY 0.076 . PKNH_0423300 749 LSMHICK|NV 0.071 . PKNH_0423300 764 TLASLLR|SM 0.144 . PKNH_0423300 786 FIPLFMK|HM 0.060 . PKNH_0423300 805 ITQAYNK|QK 0.060 . PKNH_0423300 807 QAYNKQK|IQ 0.074 . PKNH_0423300 811 KQKIQNK|YF 0.069 . PKNH_0423300 819 FYYLLAK|QY 0.060 . PKNH_0423300 825 KQYQSNR|SE 0.140 . PKNH_0423300 830 NRSEETK|NA 0.116 . PKNH_0423300 835 TKNADQK|IK 0.074 . PKNH_0423300 837 NADQKIK|LI 0.082 . ____________________________^_________________

  • Fasta :-

    >PKNH_0423300 ATGATCGCAAAGAGGTTGTTGCTAGGCTCGCTCGCATCGCGGAGCTTTGGCAGGTATAAC TTGCTCAGGAGAAAAGGGCCGATCGTCTGGACAAGGAAATTCTCCTCCTCGCGCGAAAGG ACTCCTAATTTTGGCAAAAAAAAAGCGCAAAGTGGGAATAAAAAAATCGGTAAGGAAGAC ATCAAATCGATTGACCAACACGCGGGGGAGAAATCATCTTATTCCCATGAGTCCGATGGA GGGTCGTCAGAAGGAATACTCACCCATTTAGTAAGCAAAAATGGAAAGGAGCAAATGGTA GGGGAACTGCCAAAATTAGTGCTTGCAATTTTGCAGGAAAAATCGTCCCTACCGTCAGAA AAAAAAATGCTAATAGATCAGTACAAACGAATTGTGTGTGAACGCTTGGAAGGGGTGTCT CAGAATAATGCAGATAAAAAGGATGCCCTCAATTTTGCAGACATTTTTTCCACCTTGTAT TTGTGTTACATGGAAAAGATATTCGACTTGGACTTCGTAACGAAAGTGAATGCCGCGCTG GAAGTGCTACTCAGTAGGGTCGGTGACAAAAAGGATCAAATCGGGCATCGCGATGAACGT GAGAAAGATGTGTTGAAGGATGTCACAATTAACCATTGCATGATGATGTTCCATTACTTA TCCTCTTTAAATGTTAAAAATGTAACATTGTGCAACCAGGTAGGAGACTATATCGTAAGT AATGAAGTGCCCCCCCTTGTCATCTACCATTACCTAGAATGTCTCAGCCTGCTAGCCGAC TCGACTGACAGAAGCGGCAAGAGCAGTCTGCGCGATTATGTTGTGCCCGTCGTAGAAATT TTCTTGGAAAACTTTTACAACTTCAACAATTACCTTGTGCTGCGAATTGTGCACTTTCTA CATAAACTGAGCTTTATGGACGCAGAACTGTTTCTCCTCCTGACAAGGAAGATAAATAAA AATGTGTATCGGGAGAATGCCAACCGCTTTGAGTTGTGTCTACTGGCCCGCACGTACGCC CTGTACAAAAGGGAAAACATCACCTTCAATAATTACGTGTGTGAAGATTTGTTGCGCAAC TTGATCAAATATGAGGACAACTTTCAGAACGAAGAGGATGGACCCGTTAGCAGCCATGTT AAGAACCCAGATAACAGCACCTCTGATGACTTCTCCACCCCGTTGCAGAACCAATCCGCG AACGCCCCCGATGTGATCGAAATTGAAAACGTGAACCGACAAAACTACCCCCTCTTTAAG CATCCCCTGTACAACGATGGATTGAACTTCTACGCCTTCTTCGTCGACGCCAAGACAACC AACAGGGACAAATGCTTAGAACGGAAAAATAATTTGAACTTAACTTTTGTAAACGGTAAT GCTAACGAGAAAGAGCGCCAAGTAACCAGTACACACATGTCCGAGTGGCACAAGCTATTC CTCCACGATGAGTACAAAGAGAAAGATATAAAAAACGAACCATTCGTTAAGTTGGAAGAC ACGCAAAAGGGGGATCGACAAATGGTAGAAGCGTACAATCAATCTTTATCAGAAGATCTG CACTTCCAATTTAACCATAAGAAAATTGCACAACTGTTTGAACAGGTGAGCAAAGATATG GATAACGTCGAAATCGACCTCGTGACCGACGAGGAGGTACCCACACAAATGGATGACGAA GCTGTTCACCAGTACAGGAAAAAAATTCTTTATATCGAAAATTATTACATTGGTCATATA TTTCACATAGTAGACTCTTTGCTATCTTTGAAGGCACACCACAATTGTGCCACATTCAAA AAAATGGAAAATAAAATTCTGAATGCTATAAAAAATAATGAACTGTACATAATTGACAAT TTTGATAGTGACGAAATTAAAAGCCTGTTAATTTTTTTATCACATACAAATAGAAATTAC AAAGAGGCATTTATTTACGCCCTGACGCATCGAATGGTAGATTTGTACATTAATAACTTG TGCCAGCCAAGTACATTGTCCACATTTTTTTATTTTCTGTTGAATTTCACAAAGCACAGA GTTGTTAAGAAGAACAGATTTAACCACACCATAAGGAATGTCATCTATAATAGCTATTCT TGGCTCAATGACAATAAAATCGTTTTAAATCTCACCACGGGTATCGATGCGACGAATGCA GAAGAAAAAGAAAACAGTGACACACGCCGCGTTATCAAAACGAAAAATTACTCTCTTCTG CAAGTTCTCTCCATGCACATCTGCAAAAATGTCTATTTTATGAGCCTCTCAACGCTAGCC TCCCTACTCAGATCAATGTCCTACTTGTTCTTCACCGATGCCAATTTTTTTAATGTGTTC ATACCTCTATTTATGAAGCACATGTCGGATCTCAGCAACGTAGACATTTTGAACATAACT CAGGCCTACAACAAGCAGAAAATTCAAAACAAATATTTCTACTACTTGCTAGCAAAGCAG TACCAGAGCAACCGTTCAGAGGAAACGAAGAATGCCGACCAGAAAATTAAGCTAATTGGC TAG
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_042330075 SKSSYSHESD0.992unspPKNH_042330075 SKSSYSHESD0.992unspPKNH_042330075 SKSSYSHESD0.992unspPKNH_0423300265 SSTDRSGKSS0.994unspPKNH_0423300269 SSGKSSLRDY0.997unspPKNH_0423300386 SNPDNSTSDD0.997unspPKNH_042330036 SRKFSSSRER0.993unspPKNH_042330037 SKFSSSRERT0.998unsp

PK14_1595c      PK14_1600c      PKH_131260      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India