PKNH_0423400 | ATP-dependent Clp protease proteolytic subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PKNH_0423400SP0.0005230.9993470.000130CS pos: 23-24. ICA-HK. Pr: 0.7466
No Results

  • Fasta :-

    >PKNH_0423400 MQSYPLLLLLLLLAAIALSPICAHKGGATAKYSYITSRSNVRIKRLKNFKKYKTKLLLSP GEHNQHGISIPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDL ENNKIINLNGITDVISIIDVIEYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSF CLNQSYSVIPFNQATNIEIQNKEIMNTKRKVVEIIANNTGKDKSHIEQILERDRYFSAPE AVEFNLVDHILEKE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0423400.fa Sequence name : PKNH_0423400 Sequence length : 254 VALUES OF COMPUTED PARAMETERS Coef20 : 4.409 CoefTot : -1.539 ChDiff : 9 ZoneTo : 91 KR : 13 DE : 1 CleavSite : 88 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.271 2.865 0.564 0.870 MesoH : -0.339 0.418 -0.235 0.240 MuHd_075 : 23.663 18.698 8.099 6.297 MuHd_095 : 31.950 19.750 10.028 6.724 MuHd_100 : 35.126 18.375 7.802 6.210 MuHd_105 : 39.084 17.790 9.456 6.924 Hmax_075 : 15.700 19.483 5.598 6.340 Hmax_095 : 4.100 8.300 -0.991 3.600 Hmax_100 : 10.100 7.400 -3.235 3.880 Hmax_105 : 3.500 10.900 1.035 1.208 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4734 0.5266 DFMC : 0.2338 0.7662 This protein is probably imported in chloroplast. f(Ser) = 0.1319 f(Arg) = 0.0440 CMi = 1.00251 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 254 PKNH_0423400 MQSYPLLLLLLLLAAIALSPICAHKGGATAKYSYITSRSNVRIKRLKNFKKYKTKLLLSPGEHNQHGISIPSMLLSKRII 80 FLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIINLNGITDVISIIDVIEYISSDVYTYCLGKAYGIS 160 CILASSGKKGFRFSLKNSSFCLNQSYSVIPFNQATNIEIQNKEIMNTKRKVVEIIANNTGKDKSHIEQILERDRYFSAPE 240 AVEFNLVDHILEKE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0423400 25 SPICAHK|GG 0.070 . PKNH_0423400 31 KGGATAK|YS 0.072 . PKNH_0423400 38 YSYITSR|SN 0.124 . PKNH_0423400 42 TSRSNVR|IK 0.078 . PKNH_0423400 44 RSNVRIK|RL 0.067 . PKNH_0423400 45 SNVRIKR|LK 0.365 . PKNH_0423400 47 VRIKRLK|NF 0.064 . PKNH_0423400 50 KRLKNFK|KY 0.067 . PKNH_0423400 51 RLKNFKK|YK 0.147 . PKNH_0423400 53 KNFKKYK|TK 0.061 . PKNH_0423400 55 FKKYKTK|LL 0.065 . PKNH_0423400 77 PSMLLSK|RI 0.054 . PKNH_0423400 78 SMLLSKR|II 0.144 . PKNH_0423400 106 YLEYESK|RK 0.057 . PKNH_0423400 107 LEYESKR|KP 0.119 . PKNH_0423400 108 EYESKRK|PI 0.085 . PKNH_0423400 124 GDLENNK|II 0.058 . PKNH_0423400 155 YTYCLGK|AY 0.062 . PKNH_0423400 168 ILASSGK|KG 0.057 . PKNH_0423400 169 LASSGKK|GF 0.112 . PKNH_0423400 172 SGKKGFR|FS 0.085 . PKNH_0423400 176 GFRFSLK|NS 0.086 . PKNH_0423400 202 NIEIQNK|EI 0.063 . PKNH_0423400 208 KEIMNTK|RK 0.057 . PKNH_0423400 209 EIMNTKR|KV 0.271 . PKNH_0423400 210 IMNTKRK|VV 0.150 . PKNH_0423400 221 IANNTGK|DK 0.123 . PKNH_0423400 223 NNTGKDK|SH 0.079 . PKNH_0423400 232 IEQILER|DR 0.089 . PKNH_0423400 234 QILERDR|YF 0.094 . PKNH_0423400 253 VDHILEK|E- 0.064 . ____________________________^_________________

  • Fasta :-

    >PKNH_0423400 ATGCAAAGTTACCCTCTGCTGTTGCTACTGCTGTTGCTTGCGGCGATTGCCCTTTCCCCC ATATGTGCGCACAAAGGGGGGGCAACCGCCAAGTACAGCTACATAACGAGCAGAAGCAAC GTACGAATAAAGAGATTAAAAAATTTTAAAAAGTACAAAACGAAGTTGCTCCTTTCACCT GGTGAACACAACCAACACGGGATCAGCATCCCGTCAATGTTACTATCCAAGAGAATCATT TTTCTGTCATCTCCAGTGTATCCCCATATATCAGAGCAAATAATCTCACAGCTCCTTTAC CTGGAATATGAGTCCAAAAGAAAACCAATTCATCTATACATTAACAGTACAGGCGATTTA GAAAACAATAAAATTATAAACCTTAATGGAATCACAGATGTCATATCGATTATCGATGTG ATAGAATACATTTCATCCGATGTGTACACATACTGTTTGGGGAAGGCGTATGGCATTTCC TGTATTTTGGCTAGCAGTGGGAAAAAGGGGTTTCGTTTTTCCCTCAAAAATTCGTCTTTC TGCTTGAACCAATCTTACTCGGTTATTCCCTTCAACCAAGCAACCAACATTGAAATACAG AACAAGGAAATTATGAATACGAAAAGGAAAGTCGTCGAAATTATTGCCAACAACACGGGG AAGGACAAGAGTCACATCGAGCAAATTTTGGAGAGGGATAGGTATTTCAGTGCCCCAGAG GCTGTGGAATTCAACTTGGTGGACCATATCCTCGAGAAGGAGTAG
  • Download Fasta

  • Fasta :-

    MQSYPLLLLLLLLAAIALSPICAHKGGATAKYSYITSRSNVRIKRLKNFKKYKTKLLLSP GEHNQHGISIPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDL ENNKIINLNGITDVISIIDVIEYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSF CLNQSYSVIPFNQATNIEIQNKEIMNTKRKVVEIIANNTGKDKSHIEQILERDRYFSAPE AVEFNLVDHILEKE

  • title: active site residues
  • coordinates: G158,N183,D233
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_0423400224 SGKDKSHIEQ0.997unspPKNH_0423400224 SGKDKSHIEQ0.997unspPKNH_0423400224 SGKDKSHIEQ0.997unspPKNH_0423400237 SDRYFSAPEA0.996unspPKNH_042340059 SKLLLSPGEH0.994unspPKNH_0423400174 SGFRFSLKNS0.996unsp

PK14_1595c      PK14_1600c      PKH_131255      PKH_131260      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India