PKNH_0702100 | signal peptidase complex subunit 3, putative

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  • Fasta :-

    >PKNH_0702100 MDNVLNRLNVISYSMALCFLILCLFNYGTSFYLFDEKAMSTNIKVKSVKRLVYNRHIKGD EAVLSLDLSYDMSKAFNWNLKQLFLYVLVTYETPEKVKNEVIIQDYIITNKNVAKRTYKN FITKYSLKDYNNGLRNNNINLQVCYKYMPIVGLSRSYEGTKISYKLPAEYFDNLPSNYPL YYPDK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0702100.fa Sequence name : PKNH_0702100 Sequence length : 185 VALUES OF COMPUTED PARAMETERS Coef20 : 4.546 CoefTot : -0.029 ChDiff : 8 ZoneTo : 34 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.888 2.194 0.448 0.686 MesoH : -0.777 0.360 -0.431 0.171 MuHd_075 : 26.939 13.656 5.933 5.073 MuHd_095 : 23.712 15.726 5.505 4.978 MuHd_100 : 26.401 19.679 7.909 5.077 MuHd_105 : 27.177 23.197 9.097 5.012 Hmax_075 : 12.600 15.983 2.191 5.437 Hmax_095 : 17.800 18.200 3.026 6.107 Hmax_100 : 19.000 20.200 4.565 6.360 Hmax_105 : 4.900 13.900 1.974 2.310 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8962 0.1038 DFMC : 0.8521 0.1479
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 185 PKNH_0702100 MDNVLNRLNVISYSMALCFLILCLFNYGTSFYLFDEKAMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNL 80 KQLFLYVLVTYETPEKVKNEVIIQDYIITNKNVAKRTYKNFITKYSLKDYNNGLRNNNINLQVCYKYMPIVGLSRSYEGT 160 KISYKLPAEYFDNLPSNYPLYYPDK 240 ................................................................................ 80 ................................................................................ 160 ......................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0702100 7 MDNVLNR|LN 0.095 . PKNH_0702100 37 FYLFDEK|AM 0.062 . PKNH_0702100 44 AMSTNIK|VK 0.073 . PKNH_0702100 46 STNIKVK|SV 0.132 . PKNH_0702100 49 IKVKSVK|RL 0.064 . PKNH_0702100 50 KVKSVKR|LV 0.163 . PKNH_0702100 55 KRLVYNR|HI 0.112 . PKNH_0702100 58 VYNRHIK|GD 0.197 . PKNH_0702100 74 LSYDMSK|AF 0.071 . PKNH_0702100 81 AFNWNLK|QL 0.066 . PKNH_0702100 96 TYETPEK|VK 0.059 . PKNH_0702100 98 ETPEKVK|NE 0.059 . PKNH_0702100 111 DYIITNK|NV 0.060 . PKNH_0702100 115 TNKNVAK|RT 0.084 . PKNH_0702100 116 NKNVAKR|TY 0.189 . PKNH_0702100 119 VAKRTYK|NF 0.123 . PKNH_0702100 124 YKNFITK|YS 0.070 . PKNH_0702100 128 ITKYSLK|DY 0.080 . PKNH_0702100 135 DYNNGLR|NN 0.081 . PKNH_0702100 146 NLQVCYK|YM 0.070 . PKNH_0702100 155 PIVGLSR|SY 0.107 . PKNH_0702100 161 RSYEGTK|IS 0.060 . PKNH_0702100 165 GTKISYK|LP 0.061 . PKNH_0702100 185 PLYYPDK|-- 0.067 . ____________________________^_________________

  • Fasta :-

    >PKNH_0702100 ATGGACAACGTGCTGAATAGGCTAAATGTCATTTCGTATTCCATGGCCTTGTGCTTTCTT ATCCTATGCCTCTTCAACTATGGAACTTCCTTTTATTTATTTGACGAGAAAGCAATGTCG ACGAATATAAAAGTAAAGAGTGTGAAGAGGTTGGTGTATAATCGACACATAAAAGGAGAC GAAGCCGTGCTATCGCTAGACCTATCATATGACATGAGCAAAGCATTCAATTGGAATTTG AAGCAGCTATTTCTTTATGTTCTAGTAACGTATGAAACACCAGAAAAGGTAAAAAACGAA GTTATTATACAGGATTATATAATTACCAATAAAAATGTGGCCAAAAGAACCTACAAAAAT TTCATCACGAAATATTCTCTTAAAGATTATAATAATGGATTAAGAAATAATAATATTAAT TTGCAAGTTTGTTACAAATATATGCCTATAGTTGGTTTGTCAAGATCTTATGAGGGTACT AAAATTTCGTACAAATTGCCTGCAGAATATTTTGACAATTTGCCGTCCAATTATCCTTTG TATTACCCAGACAAGTGA
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  • Fasta :-

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IDSitePeptideScoreMethod
PKNH_070210047 SIKVKSVKRL0.992unsp

PK9_0160c      PKH_070160      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India