PKNH_0705200 | ATP-dependent protease ATPase subunit ClpY, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0705200OTHER0.9994990.0000740.000426
No Results

  • Fasta :-

    >PKNH_0705200 MKNLDVHKYIKLVNFLNKKKKCPQLSLKYVKGEDGCDLQLANYVNINKGKIGNDALRYTN DSTVSKILSNVTELGNESVVSSTQRKGVEKKLFLSNGTKGKRNSNLDRNSQTKNDLTIQV NYVNGGGNLRNDVVGPLTGCRMKQTGGRKVDIRHDDGLGQSSLYRKEEQVNSKLMRMHCN GTSYEGMNQTEGRSNLHRSGEMSKFEVFQKRESLRDGCDMEGGQIHTLEKITHLGFNHRG DRYSVSNGDEGSYDAGEKNRNSNTFQSMEETERELSSEENFAKVKITKENIIIMDNLKEE SRKGKKTKKMTMTEERENVDDDLETMESNVRSSAQEKCLKVEETQGGEETGGSCNGVDND EVVGDKEKKMCDDNPNEEGKEKEKINFQMKNGKVNKKCLYPHEIVEYLNKYIIGQTEAKK VVANALRQRWRRIQVDDDMRKDIIPKNILMIGPTGVGKTEIARRISMFVDAPFIKVEATK FTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQAQETVENIILYSLLGNIKEEEKS IWRKYLKDGSLDDKVVSIDIPNYVNNNMFSNDSVENAVKEALSNHQNIKSVKIIHQNINK QNDKKTMTIREAKQKLLQLEIDSSMNQDVILKTAISSVEEEGIVFIDEIDKICSKSNSSY NGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIASGAFQRVKPNDMLNELQGRLP VHVNLSSLTINDFIEILTKTHNNLLQQNIALLKTEGIDLQFTDDAIETIANAAHDMNFYV ENIGVRRLHTIIEKIMEDINYDVYNYVNKTIVIDKEKVKKSLEGFIKQFDLKKYII
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0705200.fa Sequence name : PKNH_0705200 Sequence length : 836 VALUES OF COMPUTED PARAMETERS Coef20 : 3.513 CoefTot : -2.146 ChDiff : -3 ZoneTo : 32 KR : 9 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.629 1.041 -0.100 0.462 MesoH : -0.806 0.224 -0.433 0.184 MuHd_075 : 23.904 18.890 8.901 4.978 MuHd_095 : 24.089 16.253 9.000 4.780 MuHd_100 : 34.615 21.471 12.003 6.963 MuHd_105 : 36.908 23.868 12.922 7.763 Hmax_075 : -5.017 3.733 -2.393 3.103 Hmax_095 : 2.200 7.300 0.076 1.304 Hmax_100 : 3.500 8.300 0.011 2.940 Hmax_105 : 3.617 13.417 -0.753 3.280 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9034 0.0966 DFMC : 0.8127 0.1873
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 836 PKNH_0705200 MKNLDVHKYIKLVNFLNKKKKCPQLSLKYVKGEDGCDLQLANYVNINKGKIGNDALRYTNDSTVSKILSNVTELGNESVV 80 SSTQRKGVEKKLFLSNGTKGKRNSNLDRNSQTKNDLTIQVNYVNGGGNLRNDVVGPLTGCRMKQTGGRKVDIRHDDGLGQ 160 SSLYRKEEQVNSKLMRMHCNGTSYEGMNQTEGRSNLHRSGEMSKFEVFQKRESLRDGCDMEGGQIHTLEKITHLGFNHRG 240 DRYSVSNGDEGSYDAGEKNRNSNTFQSMEETERELSSEENFAKVKITKENIIIMDNLKEESRKGKKTKKMTMTEERENVD 320 DDLETMESNVRSSAQEKCLKVEETQGGEETGGSCNGVDNDEVVGDKEKKMCDDNPNEEGKEKEKINFQMKNGKVNKKCLY 400 PHEIVEYLNKYIIGQTEAKKVVANALRQRWRRIQVDDDMRKDIIPKNILMIGPTGVGKTEIARRISMFVDAPFIKVEATK 480 FTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQAQETVENIILYSLLGNIKEEEKSIWRKYLKDGSLDDKVVSIDI 560 PNYVNNNMFSNDSVENAVKEALSNHQNIKSVKIIHQNINKQNDKKTMTIREAKQKLLQLEIDSSMNQDVILKTAISSVEE 640 EGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIASGAFQRVKPNDMLNELQGRLP 720 VHVNLSSLTINDFIEILTKTHNNLLQQNIALLKTEGIDLQFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDIN 800 YDVYNYVNKTIVIDKEKVKKSLEGFIKQFDLKKYII 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 .................................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0705200 2 -----MK|NL 0.067 . PKNH_0705200 8 KNLDVHK|YI 0.067 . PKNH_0705200 11 DVHKYIK|LV 0.066 . PKNH_0705200 18 LVNFLNK|KK 0.061 . PKNH_0705200 19 VNFLNKK|KK 0.095 . PKNH_0705200 20 NFLNKKK|KC 0.070 . PKNH_0705200 21 FLNKKKK|CP 0.121 . PKNH_0705200 28 CPQLSLK|YV 0.088 . PKNH_0705200 31 LSLKYVK|GE 0.067 . PKNH_0705200 48 NYVNINK|GK 0.057 . PKNH_0705200 50 VNINKGK|IG 0.080 . PKNH_0705200 57 IGNDALR|YT 0.120 . PKNH_0705200 66 NDSTVSK|IL 0.079 . PKNH_0705200 85 VVSSTQR|KG 0.077 . PKNH_0705200 86 VSSTQRK|GV 0.286 . PKNH_0705200 90 QRKGVEK|KL 0.076 . PKNH_0705200 91 RKGVEKK|LF 0.097 . PKNH_0705200 99 FLSNGTK|GK 0.067 . PKNH_0705200 101 SNGTKGK|RN 0.071 . PKNH_0705200 102 NGTKGKR|NS 0.110 . PKNH_0705200 108 RNSNLDR|NS 0.119 . PKNH_0705200 113 DRNSQTK|ND 0.074 . PKNH_0705200 130 NGGGNLR|ND 0.073 . PKNH_0705200 141 GPLTGCR|MK 0.092 . PKNH_0705200 143 LTGCRMK|QT 0.075 . PKNH_0705200 148 MKQTGGR|KV 0.132 . PKNH_0705200 149 KQTGGRK|VD 0.067 . PKNH_0705200 153 GRKVDIR|HD 0.135 . PKNH_0705200 165 GQSSLYR|KE 0.104 . PKNH_0705200 166 QSSLYRK|EE 0.079 . PKNH_0705200 173 EEQVNSK|LM 0.061 . PKNH_0705200 176 VNSKLMR|MH 0.143 . PKNH_0705200 193 MNQTEGR|SN 0.128 . PKNH_0705200 198 GRSNLHR|SG 0.229 . PKNH_0705200 204 RSGEMSK|FE 0.063 . PKNH_0705200 210 KFEVFQK|RE 0.056 . PKNH_0705200 211 FEVFQKR|ES 0.171 . PKNH_0705200 215 QKRESLR|DG 0.173 . PKNH_0705200 230 QIHTLEK|IT 0.070 . PKNH_0705200 239 HLGFNHR|GD 0.102 . PKNH_0705200 242 FNHRGDR|YS 0.274 . PKNH_0705200 258 SYDAGEK|NR 0.056 . PKNH_0705200 260 DAGEKNR|NS 0.104 . PKNH_0705200 273 SMEETER|EL 0.096 . PKNH_0705200 283 SEENFAK|VK 0.075 . PKNH_0705200 285 ENFAKVK|IT 0.066 . PKNH_0705200 288 AKVKITK|EN 0.072 . PKNH_0705200 298 IIMDNLK|EE 0.061 . PKNH_0705200 302 NLKEESR|KG 0.073 . PKNH_0705200 303 LKEESRK|GK 0.124 . PKNH_0705200 305 EESRKGK|KT 0.275 . PKNH_0705200 306 ESRKGKK|TK 0.085 . PKNH_0705200 308 RKGKKTK|KM 0.085 . PKNH_0705200 309 KGKKTKK|MT 0.161 . PKNH_0705200 316 MTMTEER|EN 0.077 . PKNH_0705200 331 TMESNVR|SS 0.097 . PKNH_0705200 337 RSSAQEK|CL 0.093 . PKNH_0705200 340 AQEKCLK|VE 0.064 . PKNH_0705200 366 DEVVGDK|EK 0.056 . PKNH_0705200 368 VVGDKEK|KM 0.061 . PKNH_0705200 369 VGDKEKK|MC 0.114 . PKNH_0705200 380 NPNEEGK|EK 0.092 . PKNH_0705200 382 NEEGKEK|EK 0.061 . PKNH_0705200 384 EGKEKEK|IN 0.069 . PKNH_0705200 390 KINFQMK|NG 0.064 . PKNH_0705200 393 FQMKNGK|VN 0.063 . PKNH_0705200 396 KNGKVNK|KC 0.059 . PKNH_0705200 397 NGKVNKK|CL 0.124 . PKNH_0705200 410 IVEYLNK|YI 0.070 . PKNH_0705200 419 IGQTEAK|KV 0.076 . PKNH_0705200 420 GQTEAKK|VV 0.120 . PKNH_0705200 427 VVANALR|QR 0.072 . PKNH_0705200 429 ANALRQR|WR 0.094 . PKNH_0705200 431 ALRQRWR|RI 0.099 . PKNH_0705200 432 LRQRWRR|IQ 0.430 . PKNH_0705200 440 QVDDDMR|KD 0.065 . PKNH_0705200 441 VDDDMRK|DI 0.096 . PKNH_0705200 446 RKDIIPK|NI 0.071 . PKNH_0705200 458 GPTGVGK|TE 0.062 . PKNH_0705200 463 GKTEIAR|RI 0.092 . PKNH_0705200 464 KTEIARR|IS 0.127 . PKNH_0705200 475 VDAPFIK|VE 0.061 . PKNH_0705200 480 IKVEATK|FT 0.103 . PKNH_0705200 489 EVGFHGK|DV 0.148 . PKNH_0705200 496 DVDQIIK|DL 0.057 . PKNH_0705200 504 LVEIAVK|RQ 0.057 . PKNH_0705200 505 VEIAVKR|QK 0.183 . PKNH_0705200 507 IAVKRQK|TK 0.067 . PKNH_0705200 509 VKRQKTK|FE 0.090 . PKNH_0705200 515 KFEIEIR|EQ 0.076 . PKNH_0705200 535 SLLGNIK|EE 0.061 . PKNH_0705200 539 NIKEEEK|SI 0.071 . PKNH_0705200 543 EEKSIWR|KY 0.067 . PKNH_0705200 544 EKSIWRK|YL 0.133 . PKNH_0705200 547 IWRKYLK|DG 0.069 . PKNH_0705200 554 DGSLDDK|VV 0.081 . PKNH_0705200 579 SVENAVK|EA 0.058 . PKNH_0705200 589 SNHQNIK|SV 0.148 . PKNH_0705200 592 QNIKSVK|II 0.083 . PKNH_0705200 600 IHQNINK|QN 0.075 . PKNH_0705200 604 INKQNDK|KT 0.071 . PKNH_0705200 605 NKQNDKK|TM 0.095 . PKNH_0705200 610 KKTMTIR|EA 0.138 . PKNH_0705200 613 MTIREAK|QK 0.121 . PKNH_0705200 615 IREAKQK|LL 0.076 . PKNH_0705200 632 NQDVILK|TA 0.061 . PKNH_0705200 651 FIDEIDK|IC 0.059 . PKNH_0705200 655 IDKICSK|SN 0.072 . PKNH_0705200 672 SAEGVQR|DL 0.110 . PKNH_0705200 686 GCVINTK|YG 0.062 . PKNH_0705200 705 ASGAFQR|VK 0.073 . PKNH_0705200 707 GAFQRVK|PN 0.064 . PKNH_0705200 718 LNELQGR|LP 0.076 . PKNH_0705200 739 FIEILTK|TH 0.058 . PKNH_0705200 753 QNIALLK|TE 0.062 . PKNH_0705200 786 VENIGVR|RL 0.087 . PKNH_0705200 787 ENIGVRR|LH 0.134 . PKNH_0705200 794 LHTIIEK|IM 0.062 . PKNH_0705200 809 VYNYVNK|TI 0.062 . PKNH_0705200 815 KTIVIDK|EK 0.058 . PKNH_0705200 817 IVIDKEK|VK 0.059 . PKNH_0705200 819 IDKEKVK|KS 0.063 . PKNH_0705200 820 DKEKVKK|SL 0.232 . PKNH_0705200 827 SLEGFIK|QF 0.066 . PKNH_0705200 832 IKQFDLK|KY 0.067 . PKNH_0705200 833 KQFDLKK|YI 0.112 . ____________________________^_________________

  • Fasta :-

    >PKNH_0705200 ATGAAAAACCTCGATGTGCACAAGTATATTAAATTGGTGAATTTTTTGAACAAGAAGAAA AAATGTCCCCAGCTTAGTTTAAAATATGTCAAAGGTGAAGATGGATGTGATCTTCAATTA GCCAATTATGTAAATATCAACAAAGGAAAAATAGGGAACGATGCATTGAGATACACAAAT GACAGTACAGTGTCCAAGATACTTTCGAATGTGACCGAGCTTGGGAACGAGTCGGTGGTT TCCTCTACGCAAAGAAAAGGGGTGGAAAAAAAACTTTTTCTATCGAATGGCACCAAGGGG AAGAGGAATAGCAACCTGGATAGAAACTCCCAAACGAAGAATGATTTAACGATACAGGTA AACTATGTCAATGGGGGCGGAAATCTCCGAAACGATGTTGTGGGCCCGTTAACAGGCTGC AGAATGAAACAGACAGGAGGGAGAAAGGTAGATATACGACACGATGATGGACTGGGCCAA AGTAGTCTATATAGGAAGGAGGAGCAGGTGAATTCCAAATTGATGCGAATGCATTGTAAT GGAACATCATACGAAGGTATGAATCAGACGGAGGGACGAAGCAATCTACACAGAAGTGGC GAAATGAGCAAATTTGAAGTTTTCCAAAAGAGGGAATCTCTCCGAGATGGGTGTGACATG GAAGGGGGACAGATACACACCCTTGAGAAAATCACCCATTTAGGGTTTAACCATCGAGGG GATCGTTACAGCGTTAGTAATGGCGACGAAGGAAGCTACGACGCAGGAGAGAAAAACAGA AATTCCAATACCTTCCAATCAATGGAGGAGACAGAAAGAGAATTAAGTAGCGAAGAAAAT TTTGCGAAGGTGAAAATTACCAAAGAAAATATTATAATTATGGATAATTTGAAGGAAGAA AGTCGAAAGGGGAAAAAAACGAAGAAAATGACCATGACGGAGGAAAGGGAAAATGTGGAT GACGACTTAGAGACGATGGAAAGCAATGTGAGAAGCAGTGCACAGGAAAAATGCTTGAAG GTGGAAGAGACACAAGGAGGAGAAGAAACAGGTGGTAGTTGTAACGGGGTAGACAACGAT GAGGTGGTAGGAGACAAGGAAAAAAAAATGTGTGATGATAATCCAAATGAAGAAGGAAAA GAAAAAGAAAAAATAAATTTCCAAATGAAGAATGGCAAGGTAAATAAAAAGTGTCTGTAC CCACATGAAATTGTTGAATATTTAAACAAATATATTATAGGGCAAACGGAAGCAAAGAAA GTCGTGGCAAATGCATTGAGACAGAGATGGAGAAGAATACAAGTAGATGACGACATGAGA AAGGACATCATTCCGAAGAACATATTAATGATAGGACCAACTGGAGTTGGAAAAACAGAG ATAGCAAGAAGAATTTCCATGTTTGTGGATGCACCTTTTATCAAGGTGGAAGCGACAAAA TTTACTGAAGTGGGTTTTCACGGAAAAGACGTCGATCAGATTATTAAGGACTTAGTCGAA ATAGCCGTGAAGAGACAAAAAACAAAGTTCGAAATTGAAATTAGGGAACAGGCACAAGAA ACGGTGGAAAATATCATCTTGTATTCCCTACTGGGAAATATAAAGGAGGAGGAGAAGAGT ATTTGGAGAAAATATTTGAAAGATGGCTCCTTAGACGACAAGGTAGTGAGTATCGATATT CCAAATTATGTAAATAACAACATGTTTTCCAACGACTCAGTGGAGAATGCAGTGAAGGAA GCGCTAAGTAATCACCAAAATATTAAGAGCGTCAAAATTATACACCAAAATATTAACAAA CAGAATGATAAAAAAACCATGACTATACGAGAAGCTAAGCAGAAACTCTTGCAGTTGGAA ATCGATTCCTCTATGAACCAGGACGTTATCCTAAAAACAGCTATCAGCTCTGTAGAAGAA GAAGGAATTGTGTTCATTGACGAAATTGATAAAATTTGTTCCAAGTCGAATTCGTCTTAC AATGGACCAGATGCAAGCGCGGAGGGAGTTCAGAGAGATTTACTTCCCCTCATAGAAGGA TGTGTAATAAACACCAAGTATGGAAATATCAACACGAACTATATTTTGTTCATCGCATCA GGGGCCTTCCAGAGAGTCAAGCCAAATGATATGCTCAACGAACTACAGGGAAGATTGCCT GTGCATGTGAACCTCTCTAGTTTAACTATAAATGATTTTATCGAAATTTTGACAAAGACC CATAATAATTTGCTGCAACAGAATATTGCCCTGTTGAAAACGGAAGGGATAGATCTTCAG TTTACGGATGATGCCATTGAAACTATTGCAAATGCCGCACATGACATGAACTTTTACGTA GAGAATATCGGTGTCCGAAGACTGCATACCATCATAGAGAAAATCATGGAGGATATCAAT TACGACGTTTACAATTATGTGAATAAAACCATTGTCATTGATAAAGAGAAGGTGAAGAAA TCCCTGGAAGGATTCATTAAGCAGTTCGACTTGAAGAAGTACATCATTTGA
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  • Fasta :-

    MKNLDVHKYIKLVNFLNKKKKCPQLSLKYVKGEDGCDLQLANYVNINKGKIGNDALRYTN DSTVSKILSNVTELGNESVVSSTQRKGVEKKLFLSNGTKGKRNSNLDRNSQTKNDLTIQV NYVNGGGNLRNDVVGPLTGCRMKQTGGRKVDIRHDDGLGQSSLYRKEEQVNSKLMRMHCN GTSYEGMNQTEGRSNLHRSGEMSKFEVFQKRESLRDGCDMEGGQIHTLEKITHLGFNHRG DRYSVSNGDEGSYDAGEKNRNSNTFQSMEETERELSSEENFAKVKITKENIIIMDNLKEE SRKGKKTKKMTMTEERENVDDDLETMESNVRSSAQEKCLKVEETQGGEETGGSCNGVDND EVVGDKEKKMCDDNPNEEGKEKEKINFQMKNGKVNKKCLYPHEIVEYLNKYIIGQTEAKK VVANALRQRWRRIQVDDDMRKDIIPKNILMIGPTGVGKTEIARRISMFVDAPFIKVEATK FTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQAQETVENIILYSLLGNIKEEEKS IWRKYLKDGSLDDKVVSIDIPNYVNNNMFSNDSVENAVKEALSNHQNIKSVKIIHQNINK QNDKKTMTIREAKQKLLQLEIDSSMNQDVILKTAISSVEEEGIVFIDEIDKICSKSNSSY NGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIASGAFQRVKPNDMLNELQGRLP VHVNLSSLTINDFIEILTKTHNNLLQQNIALLKTEGIDLQFTDDAIETIANAAHDMNFYV ENIGVRRLHTIIEKIMEDINYDVYNYVNKTIVIDKEKVKKSLEGFIKQFDLKKYII

  • title: ATP binding site
  • coordinates: P453,T454,G455,V456,G457,K458,T459,E460
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_0705200267 SNTFQSMEET0.997unspPKNH_0705200267 SNTFQSMEET0.997unspPKNH_0705200267 SNTFQSMEET0.997unspPKNH_0705200271 TSMEETEREL0.992unspPKNH_0705200276 SERELSSEEN0.998unspPKNH_0705200333 SNVRSSAQEK0.995unspPKNH_0705200573 SFSNDSVENA0.992unspPKNH_0705200637 STAISSVEEE0.993unspPKNH_0705200213 SQKRESLRDG0.998unspPKNH_0705200244 SGDRYSVSNG0.997unsp

PK9_0470c      PKH_070460      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India