PKNH_0711400 | protease, putative

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

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  • Curated_GO_Functions:        

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_IDPredictionOTHERSPmTPCS_Position
PKNH_0711400SP0.2093620.7889780.001660CS pos: 18-19. VGC-FN. Pr: 0.6932
No Results

  • Fasta :-

    >PKNH_0711400 MMLHFFCIVLILQLYVGCFNIKKNIIVTYEGGRVAKGKAVKSSAFLVRRQLFKLKKIQAH SSDNWEGKTSIDEAQNNEAKNTLREFYDRNFRRLRKTFEFVKYGLISIQNNLLSNSLASQ LAISVSFFFLHFYMLSRHFLILFPYQLIPNHSNILMSLDMNNTLFFLLSIYSFKRFKDHF HSFKQRLQLNRFTIRLQDNKRKNILSICFFLIASYVLSGYVSIYTERILTLWKLFSRPLS ENVVKSLQILTGHFIWVGCSIVVFRKLLYPYFLNNESNLNLRHKSSWWFEVIYGYVFSHF VFNIVDLLNNFIINRFMGEGEDEVYVDNSIDDIVSGREFVSTLLCIISPCFSAPFFEEFI YRFFVLKSLNLFMHIHYAVTFSSLFFAIHHLNIFNLLPLFFLSFLWSYIYIYTDNILVTM LIHSFWNIYVFLSSLYS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0711400.fa Sequence name : PKNH_0711400 Sequence length : 437 VALUES OF COMPUTED PARAMETERS Coef20 : 4.292 CoefTot : -1.391 ChDiff : 15 ZoneTo : 62 KR : 11 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.982 2.235 0.455 0.779 MesoH : 1.086 1.230 -0.043 0.564 MuHd_075 : 26.872 21.901 8.255 7.773 MuHd_095 : 37.862 23.653 11.510 8.052 MuHd_100 : 34.552 21.621 10.165 7.729 MuHd_105 : 37.968 20.594 10.264 7.115 Hmax_075 : 6.400 17.500 1.476 6.043 Hmax_095 : 14.600 18.800 3.103 5.460 Hmax_100 : 10.400 16.200 1.726 4.770 Hmax_105 : 12.833 10.763 2.854 5.052 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0490 0.9510 DFMC : 0.0824 0.9176 This protein is probably imported in mitochondria. f(Ser) = 0.0645 f(Arg) = 0.0484 CMi = 0.46838 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 437 PKNH_0711400 MMLHFFCIVLILQLYVGCFNIKKNIIVTYEGGRVAKGKAVKSSAFLVRRQLFKLKKIQAHSSDNWEGKTSIDEAQNNEAK 80 NTLREFYDRNFRRLRKTFEFVKYGLISIQNNLLSNSLASQLAISVSFFFLHFYMLSRHFLILFPYQLIPNHSNILMSLDM 160 NNTLFFLLSIYSFKRFKDHFHSFKQRLQLNRFTIRLQDNKRKNILSICFFLIASYVLSGYVSIYTERILTLWKLFSRPLS 240 ENVVKSLQILTGHFIWVGCSIVVFRKLLYPYFLNNESNLNLRHKSSWWFEVIYGYVFSHFVFNIVDLLNNFIINRFMGEG 320 EDEVYVDNSIDDIVSGREFVSTLLCIISPCFSAPFFEEFIYRFFVLKSLNLFMHIHYAVTFSSLFFAIHHLNIFNLLPLF 400 FLSFLWSYIYIYTDNILVTMLIHSFWNIYVFLSSLYS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ..................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0711400 22 VGCFNIK|KN 0.061 . PKNH_0711400 23 GCFNIKK|NI 0.089 . PKNH_0711400 33 VTYEGGR|VA 0.073 . PKNH_0711400 36 EGGRVAK|GK 0.153 . PKNH_0711400 38 GRVAKGK|AV 0.118 . PKNH_0711400 41 AKGKAVK|SS 0.074 . PKNH_0711400 48 SSAFLVR|RQ 0.091 . PKNH_0711400 49 SAFLVRR|QL 0.151 . PKNH_0711400 53 VRRQLFK|LK 0.069 . PKNH_0711400 55 RQLFKLK|KI 0.065 . PKNH_0711400 56 QLFKLKK|IQ 0.087 . PKNH_0711400 68 SDNWEGK|TS 0.078 . PKNH_0711400 80 AQNNEAK|NT 0.067 . PKNH_0711400 84 EAKNTLR|EF 0.079 . PKNH_0711400 89 LREFYDR|NF 0.104 . PKNH_0711400 92 FYDRNFR|RL 0.148 . PKNH_0711400 93 YDRNFRR|LR 0.151 . PKNH_0711400 95 RNFRRLR|KT 0.221 . PKNH_0711400 96 NFRRLRK|TF 0.192 . PKNH_0711400 102 KTFEFVK|YG 0.059 . PKNH_0711400 137 HFYMLSR|HF 0.082 . PKNH_0711400 174 LSIYSFK|RF 0.072 . PKNH_0711400 175 SIYSFKR|FK 0.210 . PKNH_0711400 177 YSFKRFK|DH 0.079 . PKNH_0711400 184 DHFHSFK|QR 0.062 . PKNH_0711400 186 FHSFKQR|LQ 0.093 . PKNH_0711400 191 QRLQLNR|FT 0.112 . PKNH_0711400 195 LNRFTIR|LQ 0.096 . PKNH_0711400 200 IRLQDNK|RK 0.055 . PKNH_0711400 201 RLQDNKR|KN 0.138 . PKNH_0711400 202 LQDNKRK|NI 0.084 . PKNH_0711400 227 VSIYTER|IL 0.073 . PKNH_0711400 233 RILTLWK|LF 0.056 . PKNH_0711400 237 LWKLFSR|PL 0.090 . PKNH_0711400 245 LSENVVK|SL 0.092 . PKNH_0711400 265 CSIVVFR|KL 0.078 . PKNH_0711400 266 SIVVFRK|LL 0.088 . PKNH_0711400 282 ESNLNLR|HK 0.089 . PKNH_0711400 284 NLNLRHK|SS 0.100 . PKNH_0711400 315 NNFIINR|FM 0.139 . PKNH_0711400 337 DDIVSGR|EF 0.080 . PKNH_0711400 362 FEEFIYR|FF 0.075 . PKNH_0711400 367 YRFFVLK|SL 0.085 . ____________________________^_________________

  • Fasta :-

    >PKNH_0711400 ATGATGCTTCATTTTTTTTGTATTGTCCTAATTCTGCAGTTGTACGTCGGGTGCTTCAAC ATAAAAAAAAACATAATAGTGACATACGAAGGGGGGAGAGTAGCGAAGGGGAAGGCAGTT AAGTCGAGTGCATTTCTAGTGAGGAGGCAACTTTTTAAACTTAAAAAAATTCAAGCCCAT TCTTCAGACAATTGGGAGGGAAAAACTTCCATTGATGAAGCACAGAATAATGAAGCAAAG AATACCCTACGTGAATTTTACGATCGGAATTTTAGGCGATTGAGGAAGACATTCGAATTT GTAAAATATGGTTTAATCTCCATTCAGAATAATTTACTCTCAAACTCGTTAGCTAGTCAG CTAGCCATTTCTGTGTCGTTTTTTTTTCTTCACTTTTATATGCTATCTCGACACTTCCTC ATTTTATTCCCCTACCAGTTAATTCCAAACCATTCCAATATTTTGATGAGCTTGGACATG AACAACACGCTCTTTTTCTTATTGTCCATATATTCTTTCAAACGTTTCAAGGATCACTTT CACAGCTTCAAGCAGAGGCTACAGTTGAACCGGTTCACCATAAGGCTGCAGGACAATAAG AGGAAAAATATCCTCTCCATCTGCTTCTTTTTGATTGCGTCCTACGTCTTGTCGGGTTAC GTGTCCATATACACGGAGCGCATCTTGACGCTCTGGAAACTGTTCAGTCGCCCCCTCTCG GAAAATGTCGTGAAGTCGCTACAGATCCTGACTGGGCACTTCATATGGGTAGGGTGCAGC ATCGTCGTATTTAGGAAGTTGCTTTACCCCTACTTCCTAAACAATGAAAGCAATTTGAAT TTGCGCCACAAAAGCAGTTGGTGGTTCGAGGTAATATACGGGTACGTCTTTTCCCACTTC GTATTCAACATTGTGGATTTGTTGAACAATTTTATAATAAATCGTTTCATGGGTGAAGGT GAAGACGAAGTGTACGTGGACAACAGTATAGACGATATTGTTAGCGGAAGAGAGTTTGTT TCAACTCTGTTGTGCATTATTAGTCCCTGTTTTAGTGCACCTTTTTTTGAGGAATTCATT TATCGTTTTTTTGTGCTTAAGAGTTTGAATTTGTTCATGCATATACATTACGCCGTTACG TTTTCTTCTCTATTTTTCGCAATTCACCATTTGAACATCTTTAACTTACTTCCTCTATTT TTCCTGTCCTTCCTATGGTCTTACATTTATATATACACTGACAACATTCTCGTTACTATG CTTATTCACTCGTTTTGGAACATTTACGTTTTTTTGTCCTCCCTGTACAGCTAG
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  • Fasta :-

    MMLHFFCIVLILQLYVGCFNIKKNIIVTYEGGRVAKGKAVKSSAFLVRRQLFKLKKIQAH SSDNWEGKTSIDEAQNNEAKNTLREFYDRNFRRLRKTFEFVKYGLISIQNNLLSNSLASQ LAISVSFFFLHFYMLSRHFLILFPYQLIPNHSNILMSLDMNNTLFFLLSIYSFKRFKDHF HSFKQRLQLNRFTIRLQDNKRKNILSICFFLIASYVLSGYVSIYTERILTLWKLFSRPLS ENVVKSLQILTGHFIWVGCSIVVFRKLLYPYFLNNESNLNLRHKSSWWFEVIYGYVFSHF VFNIVDLLNNFIINRFMGEGEDEVYVDNSIDDIVSGREFVSTLLCIISPCFSAPFFEEFI YRFFVLKSLNLFMHIHYAVTFSSLFFAIHHLNIFNLLPLFFLSFLWSYIYIYTDNILVTM LIHSFWNIYVFLSSLYS

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_0711400325 YEDEVYVDNS0.992unspPKNH_0711400335 SDDIVSGREF0.991unsp

PK9_1220c      PKH_071080      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India