PKNH_0913900 | pyridoxine biosynthesis protein PDX2, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0913900OTHER0.9991740.0007740.000052
No Results

  • Fasta :-

    >PKNH_0913900 MADITIGVLSLQGDFQPHIKHLNKLEQPNLRVIEVRNIKDLSTCDGLVIPGGESTTLRKC FAYDNDALYNALKEFIHIKKKPVWGTCAGCILLSNNVENNETQSKAYGKNFSLGGLDITI SRNYYGSQNDSFICSLNVHSENSAFKKNLRGACIRAPYIKEIHSDQIHTLATFSHEPFGS NIIAAVEQNNCLGMVFHPELMPYNSFHQYFYEKVKNSKK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0913900.fa Sequence name : PKNH_0913900 Sequence length : 219 VALUES OF COMPUTED PARAMETERS Coef20 : 3.336 CoefTot : 0.141 ChDiff : 2 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.647 0.794 0.010 0.443 MesoH : -0.813 0.008 -0.493 0.135 MuHd_075 : 18.420 10.840 4.601 2.069 MuHd_095 : 16.908 8.521 3.519 1.599 MuHd_100 : 19.138 11.508 3.438 2.495 MuHd_105 : 16.753 11.529 2.072 2.829 Hmax_075 : 17.267 13.417 2.281 4.795 Hmax_095 : 11.812 10.200 1.316 3.980 Hmax_100 : 13.600 13.600 0.981 5.520 Hmax_105 : 11.200 10.300 0.277 4.043 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9340 0.0660 DFMC : 0.9372 0.0628
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 219 PKNH_0913900 MADITIGVLSLQGDFQPHIKHLNKLEQPNLRVIEVRNIKDLSTCDGLVIPGGESTTLRKCFAYDNDALYNALKEFIHIKK 80 KPVWGTCAGCILLSNNVENNETQSKAYGKNFSLGGLDITISRNYYGSQNDSFICSLNVHSENSAFKKNLRGACIRAPYIK 160 EIHSDQIHTLATFSHEPFGSNIIAAVEQNNCLGMVFHPELMPYNSFHQYFYEKVKNSKK 240 ................................................................................ 80 ................................................................................ 160 ........................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0913900 20 DFQPHIK|HL 0.069 . PKNH_0913900 24 HIKHLNK|LE 0.065 . PKNH_0913900 31 LEQPNLR|VI 0.079 . PKNH_0913900 36 LRVIEVR|NI 0.105 . PKNH_0913900 39 IEVRNIK|DL 0.159 . PKNH_0913900 58 GESTTLR|KC 0.112 . PKNH_0913900 59 ESTTLRK|CF 0.068 . PKNH_0913900 73 ALYNALK|EF 0.062 . PKNH_0913900 79 KEFIHIK|KK 0.065 . PKNH_0913900 80 EFIHIKK|KP 0.082 . PKNH_0913900 81 FIHIKKK|PV 0.150 . PKNH_0913900 105 NNETQSK|AY 0.075 . PKNH_0913900 109 QSKAYGK|NF 0.077 . PKNH_0913900 122 LDITISR|NY 0.085 . PKNH_0913900 146 SENSAFK|KN 0.064 . PKNH_0913900 147 ENSAFKK|NL 0.143 . PKNH_0913900 150 AFKKNLR|GA 0.099 . PKNH_0913900 155 LRGACIR|AP 0.111 . PKNH_0913900 160 IRAPYIK|EI 0.080 . PKNH_0913900 213 HQYFYEK|VK 0.059 . PKNH_0913900 215 YFYEKVK|NS 0.064 . PKNH_0913900 218 EKVKNSK|K- 0.064 . PKNH_0913900 219 KVKNSKK|-- 0.103 . ____________________________^_________________

  • Fasta :-

    >PKNH_0913900 ATGGCAGATATTACAATTGGCGTTTTGTCTCTCCAGGGGGATTTCCAACCACACATAAAG CACTTGAATAAATTGGAACAACCAAACTTGAGGGTTATAGAAGTTCGAAATATAAAGGAC CTGAGCACTTGTGATGGTCTCGTGATACCCGGCGGGGAGTCCACGACATTGAGAAAATGT TTCGCCTACGATAACGATGCCTTGTACAACGCCTTAAAGGAATTCATTCACATCAAGAAG AAACCCGTATGGGGGACCTGTGCGGGATGCATCCTCCTCTCGAACAACGTGGAGAACAAT GAGACACAAAGCAAAGCATACGGCAAGAATTTTTCCTTGGGGGGATTGGACATCACCATA AGCCGGAACTATTATGGCTCACAGAACGACAGCTTCATATGCTCGCTAAATGTACACTCA GAAAACAGTGCCTTCAAGAAGAATTTGCGCGGGGCCTGCATACGAGCCCCGTACATAAAG GAAATTCACTCCGATCAGATTCACACACTCGCGACATTTTCCCATGAACCCTTCGGCTCC AATATAATAGCTGCTGTCGAACAGAACAACTGCTTGGGAATGGTCTTCCATCCAGAGCTA ATGCCGTACAATTCCTTTCATCAGTATTTTTACGAGAAAGTCAAAAATAGTAAAAAGTGA
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  • Fasta :-

    MADITIGVLSLQGDFQPHIKHLNKLEQPNLRVIEVRNIKDLSTCDGLVIPGGESTTLRKC FAYDNDALYNALKEFIHIKKKPVWGTCAGCILLSNNVENNETQSKAYGKNFSLGGLDITI SRNYYGSQNDSFICSLNVHSENSAFKKNLRGACIRAPYIKEIHSDQIHTLATFSHEPFGS NIIAAVEQNNCLGMVFHPELMPYNSFHQYFYEKVKNSKK

  • title: catalytic triad
  • coordinates: C87,H197,E199
No Results
No Results
IDSitePeptideScoreMethod
PKNH_091390042 SIKDLSTCDG0.992unsp

PK11_1290c      PKH_091360      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India