PKNH_1015600 | eukaryotic translation initiation factor 3 subunit B, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1015600OTHER0.9995640.0004110.000025
No Results

  • Fasta :-

    >PKNH_1015600 MVKVSESELSDKELEEFLSDDSDEGNEELLNKKYTEKEALITLETKFPKIVTILGIPKVE EEKHSRLAEVLKKLFIKHLNAKISDSSLLNIKIYMPVDDDKKTKGICFVTFNDSFQANEA VKILNKLKLDAKHVLTASKMDDIENIISRDEHVMPINVVGFTREKIRWWLYDERCREQFI VRYDSHFEVHWFDPLEKEPQLIYTTYKKSAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF EKLIRLQHKSVKEISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEYSA RDKSYHYFLWSPDDKYIACMGKQKEVYVYELPSMLLMEDHEKKRTPLKYTFVKEFDWSPV DNIMSIWIPGTKTTPGTLILVDIPSRKELVSRKIYDVVHASIHWQSKGDYLCLKTTIEKK ISKKSKKEFTQLEIFRIREKNIPVDNVQIDGIKTKQFHWEESSSNRFALIVRDEATSRQQ IRFYKIENKGTARNTKWISTFDINSQMNFMRWSPQGSYFILASLGSEGLLYFCLLNSNDE VEVIHKDEHLLANSVSWSNCGRYLVTSVSCMANAGGSNYREENSETGFFIWSFQGRCLMT IKKPSFFQFFFRPHPKSLFSDKQKVDIKNNLKDYSKKFDVMDEKVRQAKRNQLITDRKTV EESFNEKIEKVTQLFHSFKEYEEFKKNWEQFESQFEWEEKTVVIEHVLSVKQEIFA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1015600.fa Sequence name : PKNH_1015600 Sequence length : 716 VALUES OF COMPUTED PARAMETERS Coef20 : 3.360 CoefTot : -0.001 ChDiff : 2 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.482 1.765 0.288 0.672 MesoH : -0.425 0.168 -0.348 0.193 MuHd_075 : 26.568 16.931 8.158 4.562 MuHd_095 : 23.015 13.472 5.875 4.381 MuHd_100 : 11.439 6.008 3.363 1.712 MuHd_105 : 19.794 11.119 5.427 3.296 Hmax_075 : 14.233 16.333 2.744 4.713 Hmax_095 : -0.962 9.275 -1.738 3.447 Hmax_100 : -6.500 2.800 -3.570 1.000 Hmax_105 : 6.700 12.200 0.108 4.060 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8731 0.1269 DFMC : 0.9459 0.0541
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 716 PKNH_1015600 MVKVSESELSDKELEEFLSDDSDEGNEELLNKKYTEKEALITLETKFPKIVTILGIPKVEEEKHSRLAEVLKKLFIKHLN 80 AKISDSSLLNIKIYMPVDDDKKTKGICFVTFNDSFQANEAVKILNKLKLDAKHVLTASKMDDIENIISRDEHVMPINVVG 160 FTREKIRWWLYDERCREQFIVRYDSHFEVHWFDPLEKEPQLIYTTYKKSAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF 240 EKLIRLQHKSVKEISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEYSARDKSYHYFLWSPDDKYIACM 320 GKQKEVYVYELPSMLLMEDHEKKRTPLKYTFVKEFDWSPVDNIMSIWIPGTKTTPGTLILVDIPSRKELVSRKIYDVVHA 400 SIHWQSKGDYLCLKTTIEKKISKKSKKEFTQLEIFRIREKNIPVDNVQIDGIKTKQFHWEESSSNRFALIVRDEATSRQQ 480 IRFYKIENKGTARNTKWISTFDINSQMNFMRWSPQGSYFILASLGSEGLLYFCLLNSNDEVEVIHKDEHLLANSVSWSNC 560 GRYLVTSVSCMANAGGSNYREENSETGFFIWSFQGRCLMTIKKPSFFQFFFRPHPKSLFSDKQKVDIKNNLKDYSKKFDV 640 MDEKVRQAKRNQLITDRKTVEESFNEKIEKVTQLFHSFKEYEEFKKNWEQFESQFEWEEKTVVIEHVLSVKQEIFA 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................................................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1015600 3 ----MVK|VS 0.064 . PKNH_1015600 12 ESELSDK|EL 0.068 . PKNH_1015600 32 NEELLNK|KY 0.063 . PKNH_1015600 33 EELLNKK|YT 0.095 . PKNH_1015600 37 NKKYTEK|EA 0.072 . PKNH_1015600 46 LITLETK|FP 0.059 . PKNH_1015600 49 LETKFPK|IV 0.081 . PKNH_1015600 58 TILGIPK|VE 0.057 . PKNH_1015600 63 PKVEEEK|HS 0.061 . PKNH_1015600 66 EEEKHSR|LA 0.094 . PKNH_1015600 72 RLAEVLK|KL 0.069 . PKNH_1015600 73 LAEVLKK|LF 0.103 . PKNH_1015600 77 LKKLFIK|HL 0.080 . PKNH_1015600 82 IKHLNAK|IS 0.080 . PKNH_1015600 92 SSLLNIK|IY 0.063 . PKNH_1015600 101 MPVDDDK|KT 0.066 . PKNH_1015600 102 PVDDDKK|TK 0.091 . PKNH_1015600 104 DDDKKTK|GI 0.078 . PKNH_1015600 122 QANEAVK|IL 0.064 . PKNH_1015600 126 AVKILNK|LK 0.058 . PKNH_1015600 128 KILNKLK|LD 0.062 . PKNH_1015600 132 KLKLDAK|HV 0.076 . PKNH_1015600 139 HVLTASK|MD 0.060 . PKNH_1015600 149 IENIISR|DE 0.105 . PKNH_1015600 163 NVVGFTR|EK 0.073 . PKNH_1015600 165 VGFTREK|IR 0.053 . PKNH_1015600 167 FTREKIR|WW 0.100 . PKNH_1015600 174 WWLYDER|CR 0.076 . PKNH_1015600 176 LYDERCR|EQ 0.077 . PKNH_1015600 182 REQFIVR|YD 0.119 . PKNH_1015600 197 WFDPLEK|EP 0.056 . PKNH_1015600 207 LIYTTYK|KS 0.060 . PKNH_1015600 208 IYTTYKK|SA 0.115 . PKNH_1015600 242 GGDNFEK|LI 0.063 . PKNH_1015600 245 NFEKLIR|LQ 0.081 . PKNH_1015600 249 LIRLQHK|SV 0.133 . PKNH_1015600 252 LQHKSVK|EI 0.081 . PKNH_1015600 274 GTPASLR|NE 0.069 . PKNH_1015600 277 ASLRNEK|SI 0.200 . PKNH_1015600 283 KSICIWR|VI 0.096 . PKNH_1015600 288 WRVITGK|LL 0.066 . PKNH_1015600 291 ITGKLLR|SF 0.127 . PKNH_1015600 301 TPEYSAR|DK 0.158 . PKNH_1015600 303 EYSARDK|SY 0.094 . PKNH_1015600 315 LWSPDDK|YI 0.087 . PKNH_1015600 322 YIACMGK|QK 0.068 . PKNH_1015600 324 ACMGKQK|EV 0.081 . PKNH_1015600 342 LMEDHEK|KR 0.060 . PKNH_1015600 343 MEDHEKK|RT 0.086 . PKNH_1015600 344 EDHEKKR|TP 0.157 . PKNH_1015600 348 KKRTPLK|YT 0.099 . PKNH_1015600 353 LKYTFVK|EF 0.071 . PKNH_1015600 372 IWIPGTK|TT 0.057 . PKNH_1015600 386 LVDIPSR|KE 0.067 . PKNH_1015600 387 VDIPSRK|EL 0.068 . PKNH_1015600 392 RKELVSR|KI 0.139 . PKNH_1015600 393 KELVSRK|IY 0.093 . PKNH_1015600 407 SIHWQSK|GD 0.079 . PKNH_1015600 414 GDYLCLK|TT 0.063 . PKNH_1015600 419 LKTTIEK|KI 0.062 . PKNH_1015600 420 KTTIEKK|IS 0.088 . PKNH_1015600 423 IEKKISK|KS 0.067 . PKNH_1015600 424 EKKISKK|SK 0.145 . PKNH_1015600 426 KISKKSK|KE 0.101 . PKNH_1015600 427 ISKKSKK|EF 0.156 . PKNH_1015600 436 TQLEIFR|IR 0.095 . PKNH_1015600 438 LEIFRIR|EK 0.081 . PKNH_1015600 440 IFRIREK|NI 0.061 . PKNH_1015600 453 VQIDGIK|TK 0.054 . PKNH_1015600 455 IDGIKTK|QF 0.092 . PKNH_1015600 466 EESSSNR|FA 0.154 . PKNH_1015600 472 RFALIVR|DE 0.100 . PKNH_1015600 478 RDEATSR|QQ 0.080 . PKNH_1015600 482 TSRQQIR|FY 0.160 . PKNH_1015600 485 QQIRFYK|IE 0.133 . PKNH_1015600 489 FYKIENK|GT 0.066 . PKNH_1015600 493 ENKGTAR|NT 0.088 . PKNH_1015600 496 GTARNTK|WI 0.179 . PKNH_1015600 511 SQMNFMR|WS 0.115 . PKNH_1015600 546 EVEVIHK|DE 0.060 . PKNH_1015600 562 SWSNCGR|YL 0.137 . PKNH_1015600 580 AGGSNYR|EE 0.080 . PKNH_1015600 596 IWSFQGR|CL 0.158 . PKNH_1015600 602 RCLMTIK|KP 0.060 . PKNH_1015600 603 CLMTIKK|PS 0.093 . PKNH_1015600 612 FFQFFFR|PH 0.111 . PKNH_1015600 616 FFRPHPK|SL 0.084 . PKNH_1015600 622 KSLFSDK|QK 0.071 . PKNH_1015600 624 LFSDKQK|VD 0.065 . PKNH_1015600 628 KQKVDIK|NN 0.057 . PKNH_1015600 632 DIKNNLK|DY 0.078 . PKNH_1015600 636 NLKDYSK|KF 0.060 . PKNH_1015600 637 LKDYSKK|FD 0.105 . PKNH_1015600 644 FDVMDEK|VR 0.059 . PKNH_1015600 646 VMDEKVR|QA 0.088 . PKNH_1015600 649 EKVRQAK|RN 0.118 . PKNH_1015600 650 KVRQAKR|NQ 0.120 . PKNH_1015600 657 NQLITDR|KT 0.070 . PKNH_1015600 658 QLITDRK|TV 0.120 . PKNH_1015600 667 EESFNEK|IE 0.058 . PKNH_1015600 670 FNEKIEK|VT 0.057 . PKNH_1015600 679 QLFHSFK|EY 0.070 . PKNH_1015600 685 KEYEEFK|KN 0.068 . PKNH_1015600 686 EYEEFKK|NW 0.131 . PKNH_1015600 700 QFEWEEK|TV 0.068 . PKNH_1015600 711 EHVLSVK|QE 0.060 . ____________________________^_________________

  • Fasta :-

    >PKNH_1015600 ATGGTGAAGGTCTCGGAGAGCGAACTGAGCGACAAGGAGTTGGAGGAATTCCTGTCGGAC GACAGCGACGAGGGAAATGAGGAACTGTTAAATAAAAAGTATACGGAGAAAGAAGCACTG ATTACGCTGGAAACCAAATTTCCCAAAATAGTTACGATATTAGGTATTCCAAAGGTAGAG GAAGAGAAGCATAGCAGATTGGCGGAGGTGTTGAAGAAATTATTTATAAAACATTTGAAT GCCAAAATAAGTGACTCCTCCTTATTGAACATAAAAATATACATGCCTGTAGATGATGAC AAGAAAACCAAAGGGATCTGCTTCGTAACCTTTAATGACAGTTTCCAGGCAAACGAAGCA GTGAAGATTCTGAACAAGTTGAAGCTGGATGCAAAACACGTGTTAACCGCTTCGAAAATG GATGATATAGAAAATATTATAAGTAGAGATGAACACGTTATGCCAATAAATGTCGTTGGT TTTACGAGAGAAAAAATCAGATGGTGGTTATATGATGAGAGGTGTAGAGAACAGTTCATT GTCCGGTACGATTCTCACTTTGAAGTTCACTGGTTTGATCCCCTGGAAAAAGAACCACAA CTCATTTACACTACTTATAAGAAAAGTGCACCTTTCTCCAGTGTGCAGTGGAGTAACCAA GGATCCTATTTAGTTAGTTTTCACAACCCTGGTATAGCTCTCTGGGGGGGAGACAACTTC GAAAAATTAATTCGATTGCAGCATAAAAGTGTAAAGGAGATTAGTTTTTCTCCCAATGAA AATTATGTTCTCACATGGGATGGTACCCCTGCGTCTTTGAGAAATGAAAAATCCATATGT ATTTGGAGAGTAATAACAGGAAAATTGTTGCGTTCGTTTATTACGCCAGAATATAGCGCC AGGGATAAGAGCTACCATTACTTTTTGTGGAGTCCAGATGATAAATACATTGCTTGTATG GGAAAGCAGAAGGAGGTGTATGTGTATGAGCTGCCAAGTATGTTGTTGATGGAAGACCAC GAAAAGAAGAGGACTCCTCTTAAGTACACTTTTGTGAAGGAATTCGATTGGTCTCCTGTT GATAACATTATGTCCATATGGATTCCAGGGACGAAAACTACCCCAGGAACATTAATCCTG GTAGATATTCCCTCTAGGAAGGAACTTGTGTCGAGAAAAATATATGATGTGGTGCATGCA TCTATACATTGGCAAAGTAAGGGAGATTACTTGTGTCTGAAAACTACCATCGAAAAAAAG ATTAGTAAGAAGAGCAAAAAGGAATTCACCCAATTAGAAATTTTCCGCATCAGAGAAAAG AACATCCCCGTGGATAATGTTCAAATAGATGGAATCAAAACGAAGCAATTCCATTGGGAA GAATCCAGTAGCAATAGATTCGCTTTAATTGTTAGAGATGAAGCCACTAGTAGACAACAA ATTAGGTTTTACAAAATTGAGAACAAGGGCACAGCTAGAAATACTAAATGGATTAGCACC TTTGATATTAACAGCCAGATGAACTTTATGCGTTGGTCACCACAGGGATCCTACTTCATT TTAGCTTCATTAGGATCAGAAGGTCTTCTCTACTTCTGCCTTCTCAATTCCAATGATGAA GTGGAAGTGATACATAAAGATGAACACCTCCTGGCGAATTCCGTTTCGTGGAGCAACTGT GGAAGGTATCTAGTCACATCAGTCTCTTGCATGGCAAACGCAGGTGGCTCCAACTATAGG GAAGAAAATAGCGAAACGGGATTTTTCATATGGTCTTTTCAAGGCAGGTGCTTAATGACC ATTAAGAAGCCTTCCTTCTTTCAGTTTTTCTTTAGACCACACCCCAAATCTCTGTTCAGT GACAAGCAAAAAGTCGACATAAAAAATAACTTAAAGGACTATTCCAAAAAGTTCGATGTT ATGGATGAGAAGGTTAGACAAGCCAAACGAAATCAACTCATAACTGACCGAAAAACTGTG GAAGAGTCATTTAACGAGAAAATAGAGAAAGTCACTCAACTTTTCCACTCCTTCAAGGAG TATGAAGAATTCAAGAAAAATTGGGAGCAGTTTGAGAGCCAATTCGAATGGGAGGAGAAA ACCGTCGTCATTGAACATGTCCTCTCAGTCAAACAGGAAATATTTGCATAA
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  • Fasta :-

    MVKVSESELSDKELEEFLSDDSDEGNEELLNKKYTEKEALITLETKFPKIVTILGIPKVE EEKHSRLAEVLKKLFIKHLNAKISDSSLLNIKIYMPVDDDKKTKGICFVTFNDSFQANEA VKILNKLKLDAKHVLTASKMDDIENIISRDEHVMPINVVGFTREKIRWWLYDERCREQFI VRYDSHFEVHWFDPLEKEPQLIYTTYKKSAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF EKLIRLQHKSVKEISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEYSA RDKSYHYFLWSPDDKYIACMGKQKEVYVYELPSMLLMEDHEKKRTPLKYTFVKEFDWSPV DNIMSIWIPGTKTTPGTLILVDIPSRKELVSRKIYDVVHASIHWQSKGDYLCLKTTIEKK ISKKSKKEFTQLEIFRIREKNIPVDNVQIDGIKTKQFHWEESSSNRFALIVRDEATSRQQ IRFYKIENKGTARNTKWISTFDINSQMNFMRWSPQGSYFILASLGSEGLLYFCLLNSNDE VEVIHKDEHLLANSVSWSNCGRYLVTSVSCMANAGGSNYREENSETGFFIWSFQGRCLMT IKKPSFFQFFFRPHPKSLFSDKQKVDIKNNLKDYSKKFDVMDEKVRQAKRNQLITDRKTV EESFNEKIEKVTQLFHSFKEYEEFKKNWEQFESQFEWEEKTVVIEHVLSVKQEIFA

  • title: polypeptide substrate binding site
  • coordinates: I53,I56,K63,R66,L67,E69,V70,L71,K73,L74,K77,I123,L124,N125,K126,K128,L129,V134,L135
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_1015600185 SVRYDSHFEV0.993unspPKNH_1015600185 SVRYDSHFEV0.993unspPKNH_1015600185 SVRYDSHFEV0.993unspPKNH_1015600250 SLQHKSVKEI0.995unspPKNH_1015600257 SEISFSPNEN0.992unspPKNH_1015600299 STPEYSARDK0.993unspPKNH_1015600358 SEFDWSPVDN0.994unspPKNH_1015600422 SEKKISKKSK0.996unspPKNH_1015600425 SISKKSKKEF0.998unspPKNH_1015600677 SQLFHSFKEY0.997unspPKNH_101560010 SESELSDKEL0.997unspPKNH_101560022 SLSDDSDEGN0.995unsp

PK5_1700w      PKH_101510      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India