PKNH_1026700 | rhomboid protease ROM4, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PKNH_1026700OTHER0.9999980.0000010.000001
No Results

  • Fasta :-

    >PKNH_1026700 MGTEKASNGNHEEKSKSKSKSKSKAVRHVAESPGRLTEESPKKGEFKKAVPKKNILGNYK VSKGPFLSSDKLGKNVDSSDKDDTPSGNKEDSDEESDVSMGVARGGGPRSGRNTTDALGA TATKSATATKSATGTKNATGTKSGAGTKSGTGTKNATGTNRGTTAKGGMTDTEVKDGPSD IKILVTSEEPLHTLPSGAVERRAPLNPFASPILGKYRRKKKNAKIKVKDPRLNNNPLVGR LIVCISSTAILFWVFFAEMIFNYNTFNGRCISKVLYPIYTESVIKKREPFYVFLGYGACE YNLEESASDRHFIGTKASDKGWPTNKVEHNADARGDSSWDSVNTRVYNQLGGLNTNYIRN YGEIYRLFWSVYLHGGFMHIIFNVLCQIQILWMIEPDWGFLRTLLLFFISGVTGNLLSAV CDPCGVTIGSSGSLYGLIGALFTYHIEYWKTIPRPCSVLIFMVIVIIFGIFIGMFGYTDN YAHMGGCLGGILYGFATITTVSAADKCTLGERMLTSPPFSWFLSNETKELIEAKAREKKI RGENYRKKQIANKVHKEDAFHIMISLMKKRINDEGRPPCRMKMREWIVRITAASALIIMW IVLFVYLLNETAYKSYTPMGQIKFTGVHTCFCCEITKEKFPFISVGNFYWCFTNEEATKY YCGK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1026700.fa Sequence name : PKNH_1026700 Sequence length : 664 VALUES OF COMPUTED PARAMETERS Coef20 : 2.956 CoefTot : -0.250 ChDiff : 28 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.953 3.235 0.699 1.102 MesoH : 1.123 1.322 0.152 0.563 MuHd_075 : 22.658 9.760 5.005 3.135 MuHd_095 : 10.509 4.394 2.986 1.448 MuHd_100 : 11.210 6.063 4.574 2.327 MuHd_105 : 12.261 7.062 5.659 2.655 Hmax_075 : -11.200 -7.788 -6.389 -1.103 Hmax_095 : -12.425 -7.700 -5.969 -0.858 Hmax_100 : -7.600 -7.500 -4.045 -0.170 Hmax_105 : -10.500 -8.283 -5.231 -0.828 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9967 0.0033 DFMC : 0.9941 0.0059
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 664 PKNH_1026700 MGTEKASNGNHEEKSKSKSKSKSKAVRHVAESPGRLTEESPKKGEFKKAVPKKNILGNYKVSKGPFLSSDKLGKNVDSSD 80 KDDTPSGNKEDSDEESDVSMGVARGGGPRSGRNTTDALGATATKSATATKSATGTKNATGTKSGAGTKSGTGTKNATGTN 160 RGTTAKGGMTDTEVKDGPSDIKILVTSEEPLHTLPSGAVERRAPLNPFASPILGKYRRKKKNAKIKVKDPRLNNNPLVGR 240 LIVCISSTAILFWVFFAEMIFNYNTFNGRCISKVLYPIYTESVIKKREPFYVFLGYGACEYNLEESASDRHFIGTKASDK 320 GWPTNKVEHNADARGDSSWDSVNTRVYNQLGGLNTNYIRNYGEIYRLFWSVYLHGGFMHIIFNVLCQIQILWMIEPDWGF 400 LRTLLLFFISGVTGNLLSAVCDPCGVTIGSSGSLYGLIGALFTYHIEYWKTIPRPCSVLIFMVIVIIFGIFIGMFGYTDN 480 YAHMGGCLGGILYGFATITTVSAADKCTLGERMLTSPPFSWFLSNETKELIEAKAREKKIRGENYRKKQIANKVHKEDAF 560 HIMISLMKKRINDEGRPPCRMKMREWIVRITAASALIIMWIVLFVYLLNETAYKSYTPMGQIKFTGVHTCFCCEITKEKF 640 PFISVGNFYWCFTNEEATKYYCGK 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ........................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1026700 5 --MGTEK|AS 0.059 . PKNH_1026700 14 NGNHEEK|SK 0.104 . PKNH_1026700 16 NHEEKSK|SK 0.087 . PKNH_1026700 18 EEKSKSK|SK 0.093 . PKNH_1026700 20 KSKSKSK|SK 0.148 . PKNH_1026700 22 KSKSKSK|SK 0.081 . PKNH_1026700 24 KSKSKSK|AV 0.100 . PKNH_1026700 27 SKSKAVR|HV 0.223 . PKNH_1026700 35 VAESPGR|LT 0.089 . PKNH_1026700 42 LTEESPK|KG 0.060 . PKNH_1026700 43 TEESPKK|GE 0.100 . PKNH_1026700 47 PKKGEFK|KA 0.076 . PKNH_1026700 48 KKGEFKK|AV 0.196 . PKNH_1026700 52 FKKAVPK|KN 0.065 . PKNH_1026700 53 KKAVPKK|NI 0.152 . PKNH_1026700 60 NILGNYK|VS 0.053 . PKNH_1026700 63 GNYKVSK|GP 0.068 . PKNH_1026700 71 PFLSSDK|LG 0.052 . PKNH_1026700 74 SSDKLGK|NV 0.086 . PKNH_1026700 81 NVDSSDK|DD 0.068 . PKNH_1026700 89 DTPSGNK|ED 0.059 . PKNH_1026700 104 VSMGVAR|GG 0.119 . PKNH_1026700 109 ARGGGPR|SG 0.123 . PKNH_1026700 112 GGPRSGR|NT 0.368 . PKNH_1026700 124 LGATATK|SA 0.089 . PKNH_1026700 130 KSATATK|SA 0.110 . PKNH_1026700 136 KSATGTK|NA 0.073 . PKNH_1026700 142 KNATGTK|SG 0.071 . PKNH_1026700 148 KSGAGTK|SG 0.073 . PKNH_1026700 154 KSGTGTK|NA 0.066 . PKNH_1026700 161 NATGTNR|GT 0.126 . PKNH_1026700 166 NRGTTAK|GG 0.076 . PKNH_1026700 175 MTDTEVK|DG 0.058 . PKNH_1026700 182 DGPSDIK|IL 0.060 . PKNH_1026700 201 PSGAVER|RA 0.088 . PKNH_1026700 202 SGAVERR|AP 0.130 . PKNH_1026700 215 ASPILGK|YR 0.069 . PKNH_1026700 217 PILGKYR|RK 0.075 . PKNH_1026700 218 ILGKYRR|KK 0.122 . PKNH_1026700 219 LGKYRRK|KK 0.088 . PKNH_1026700 220 GKYRRKK|KN 0.303 . PKNH_1026700 221 KYRRKKK|NA 0.483 . PKNH_1026700 224 RKKKNAK|IK 0.066 . PKNH_1026700 226 KKNAKIK|VK 0.086 . PKNH_1026700 228 NAKIKVK|DP 0.068 . PKNH_1026700 231 IKVKDPR|LN 0.097 . PKNH_1026700 240 NNPLVGR|LI 0.076 . PKNH_1026700 269 YNTFNGR|CI 0.110 . PKNH_1026700 273 NGRCISK|VL 0.066 . PKNH_1026700 285 YTESVIK|KR 0.058 . PKNH_1026700 286 TESVIKK|RE 0.099 . PKNH_1026700 287 ESVIKKR|EP 0.174 . PKNH_1026700 310 EESASDR|HF 0.105 . PKNH_1026700 316 RHFIGTK|AS 0.072 . PKNH_1026700 320 GTKASDK|GW 0.066 . PKNH_1026700 326 KGWPTNK|VE 0.058 . PKNH_1026700 334 EHNADAR|GD 0.094 . PKNH_1026700 345 WDSVNTR|VY 0.105 . PKNH_1026700 359 LNTNYIR|NY 0.094 . PKNH_1026700 366 NYGEIYR|LF 0.075 . PKNH_1026700 402 PDWGFLR|TL 0.070 . PKNH_1026700 450 YHIEYWK|TI 0.055 . PKNH_1026700 454 YWKTIPR|PC 0.098 . PKNH_1026700 506 TVSAADK|CT 0.076 . PKNH_1026700 512 KCTLGER|ML 0.071 . PKNH_1026700 528 FLSNETK|EL 0.072 . PKNH_1026700 534 KELIEAK|AR 0.079 . PKNH_1026700 536 LIEAKAR|EK 0.086 . PKNH_1026700 538 EAKAREK|KI 0.062 . PKNH_1026700 539 AKAREKK|IR 0.361 . PKNH_1026700 541 AREKKIR|GE 0.135 . PKNH_1026700 546 IRGENYR|KK 0.104 . PKNH_1026700 547 RGENYRK|KQ 0.072 . PKNH_1026700 548 GENYRKK|QI 0.159 . PKNH_1026700 553 KKQIANK|VH 0.059 . PKNH_1026700 556 IANKVHK|ED 0.069 . PKNH_1026700 568 IMISLMK|KR 0.058 . PKNH_1026700 569 MISLMKK|RI 0.135 . PKNH_1026700 570 ISLMKKR|IN 0.284 . PKNH_1026700 576 RINDEGR|PP 0.098 . PKNH_1026700 580 EGRPPCR|MK 0.085 . PKNH_1026700 582 RPPCRMK|MR 0.083 . PKNH_1026700 584 PCRMKMR|EW 0.123 . PKNH_1026700 589 MREWIVR|IT 0.104 . PKNH_1026700 614 LNETAYK|SY 0.083 . PKNH_1026700 623 TPMGQIK|FT 0.098 . PKNH_1026700 637 FCCEITK|EK 0.058 . PKNH_1026700 639 CEITKEK|FP 0.070 . PKNH_1026700 659 TNEEATK|YY 0.074 . PKNH_1026700 664 TKYYCGK|-- 0.080 . ____________________________^_________________

  • Fasta :-

    >PKNH_1026700 ATGGGGACAGAGAAAGCGAGCAACGGGAATCATGAAGAAAAAAGCAAAAGCAAAAGCAAG AGCAAGAGCAAGGCGGTTCGGCATGTGGCGGAGTCGCCAGGGCGGTTGACCGAAGAATCC CCCAAGAAGGGAGAATTCAAAAAAGCGGTGCCAAAGAAAAATATCCTGGGTAATTACAAA GTGAGCAAAGGGCCTTTCCTGTCGAGCGATAAGTTAGGGAAAAATGTGGACTCGTCTGAT AAGGACGATACACCGAGTGGAAACAAGGAAGATAGTGATGAGGAGAGTGACGTTAGCATG GGTGTTGCACGGGGCGGAGGCCCTCGATCGGGAAGAAACACAACGGATGCACTGGGCGCA ACCGCGACGAAAAGTGCAACCGCCACGAAAAGTGCAACTGGCACGAAAAACGCAACTGGC ACGAAAAGTGGAGCTGGCACGAAAAGCGGAACTGGCACGAAAAACGCAACTGGCACGAAT AGAGGAACCACTGCAAAAGGGGGAATGACCGATACGGAAGTAAAAGATGGTCCCAGTGAC ATAAAAATTTTAGTGACGAGCGAGGAGCCCTTGCACACGCTGCCATCCGGAGCTGTGGAG AGGAGAGCTCCGTTGAACCCCTTTGCATCCCCCATTTTAGGAAAGTACAGGAGAAAAAAA AAAAATGCCAAAATAAAGGTTAAGGACCCAAGGCTTAATAACAACCCACTTGTAGGACGA TTAATCGTCTGTATATCGTCAACGGCAATACTCTTTTGGGTCTTCTTCGCAGAGATGATA TTTAATTACAATACATTTAATGGAAGATGTATTTCGAAGGTGCTATACCCTATTTACACG GAAAGCGTAATAAAGAAGAGAGAACCGTTTTATGTATTCCTTGGTTATGGAGCATGTGAA TACAATTTAGAGGAATCCGCGTCGGATAGACATTTTATTGGAACGAAAGCATCCGACAAA GGTTGGCCCACAAACAAAGTAGAACACAATGCAGATGCAAGAGGAGATTCCAGTTGGGAT AGTGTAAATACACGTGTATACAACCAATTAGGAGGACTCAACACAAATTATATAAGAAAC TATGGAGAGATTTATCGTCTATTTTGGTCTGTCTATTTGCATGGTGGATTCATGCACATT ATTTTTAATGTATTATGTCAGATACAGATTCTTTGGATGATAGAACCCGATTGGGGATTC CTTAGAACCCTTCTTCTTTTTTTTATATCCGGAGTTACTGGAAATTTATTATCTGCAGTG TGCGATCCATGTGGTGTCACCATCGGATCCTCCGGTTCTTTATATGGTTTGATAGGGGCA CTTTTCACATACCACATAGAATACTGGAAAACTATTCCTAGACCCTGCTCTGTCTTAATC TTTATGGTTATCGTAATTATTTTCGGTATCTTCATTGGTATGTTTGGATATACGGATAAT TACGCTCACATGGGAGGTTGCTTAGGGGGCATACTTTATGGTTTTGCTACCATCACGACT GTTTCTGCAGCAGACAAGTGTACCTTGGGAGAACGCATGTTGACATCTCCACCCTTTTCA TGGTTCTTGTCTAATGAGACCAAGGAGTTAATTGAGGCCAAGGCCAGGGAAAAGAAAATA CGCGGAGAAAATTATCGAAAGAAGCAGATTGCCAACAAGGTACACAAGGAAGACGCTTTC CATATTATGATATCTCTCATGAAGAAACGAATTAATGATGAAGGAAGACCGCCATGTAGA ATGAAAATGCGCGAATGGATTGTCCGGATTACAGCCGCCTCTGCTCTCATAATCATGTGG ATCGTGCTCTTCGTCTACCTTCTAAACGAAACTGCCTACAAATCCTACACCCCCATGGGT CAAATTAAATTTACTGGTGTCCACACCTGCTTCTGCTGTGAAATCACCAAGGAGAAATTC CCCTTCATCAGCGTTGGCAACTTCTACTGGTGCTTTACCAACGAGGAGGCAACCAAGTAC TACTGCGGGAAGTGA
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  • Fasta :-

    MGTEKASNGNHEEKSKSKSKSKSKAVRHVAESPGRLTEESPKKGEFKKAVPKKNILGNYK VSKGPFLSSDKLGKNVDSSDKDDTPSGNKEDSDEESDVSMGVARGGGPRSGRNTTDALGA TATKSATATKSATGTKNATGTKSGAGTKSGTGTKNATGTNRGTTAKGGMTDTEVKDGPSD IKILVTSEEPLHTLPSGAVERRAPLNPFASPILGKYRRKKKNAKIKVKDPRLNNNPLVGR LIVCISSTAILFWVFFAEMIFNYNTFNGRCISKVLYPIYTESVIKKREPFYVFLGYGACE YNLEESASDRHFIGTKASDKGWPTNKVEHNADARGDSSWDSVNTRVYNQLGGLNTNYIRN YGEIYRLFWSVYLHGGFMHIIFNVLCQIQILWMIEPDWGFLRTLLLFFISGVTGNLLSAV CDPCGVTIGSSGSLYGLIGALFTYHIEYWKTIPRPCSVLIFMVIVIIFGIFIGMFGYTDN YAHMGGCLGGILYGFATITTVSAADKCTLGERMLTSPPFSWFLSNETKELIEAKAREKKI RGENYRKKQIANKVHKEDAFHIMISLMKKRINDEGRPPCRMKMREWIVRITAASALIIMW IVLFVYLLNETAYKSYTPMGQIKFTGVHTCFCCEITKEKFPFISVGNFYWCFTNEEATKY YCGK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_102670021 SSKSKSKSKA0.995unspPKNH_102670021 SSKSKSKSKA0.995unspPKNH_102670021 SSKSKSKSKA0.995unspPKNH_102670032 SHVAESPGRL0.995unspPKNH_102670040 SLTEESPKKG0.997unspPKNH_102670079 SNVDSSDKDD0.998unspPKNH_102670092 SNKEDSDEES0.998unspPKNH_1026700337 SARGDSSWDS0.996unspPKNH_102670017 SEKSKSKSKS0.993unspPKNH_102670019 SSKSKSKSKS0.996unsp

PK5_0615c      PKH_102600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India