PKNH_1113200 | rhomboid protease ROM7, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1113200SP0.0021290.9905070.007363CS pos: 18-19. GNA-FL. Pr: 0.9375
No Results

  • Fasta :-

    >PKNH_1113200 MNLLILLAIATCLTIGNAFLHRGINYKRTGHAKISNKPTVIQYHHALHKTHTRKGVKKIY SFKRHVSEIWNNIKTRRIENYMEDFFQTQQVKNTLQNNFLCFKHLFNKCKLDRVIIAVNV ALYFYLNRIDKDDEKKIFFHKGNLLEVKEQKAEKYKCNYHDVYKTKNFKTFFTSLFIHKN ILHLYFNMSSLISIYKIISQIYTNGQIFVTFILSGVLSNIISYICYVREKKENVLLKNLI LTNTSNENNFLVNKNNKIICGSSSCIYSLYGMHITYIIFFYFKHNYIVNSNFLYNFFYSF VSSLLLENVSHLNHVLGFFCGFFFSSLIVLFDRNA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1113200.fa Sequence name : PKNH_1113200 Sequence length : 335 VALUES OF COMPUTED PARAMETERS Coef20 : 4.709 CoefTot : -2.557 ChDiff : 24 ZoneTo : 67 KR : 12 DE : 0 CleavSite : 66 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.594 2.424 0.514 0.882 MesoH : 0.796 0.935 -0.082 0.478 MuHd_075 : 47.183 25.295 13.127 9.275 MuHd_095 : 35.477 20.420 9.876 8.824 MuHd_100 : 38.736 23.607 10.116 9.658 MuHd_105 : 39.491 26.707 11.316 9.859 Hmax_075 : 4.083 11.000 -1.388 1.925 Hmax_095 : -0.200 4.700 -0.965 2.230 Hmax_100 : 5.400 10.700 -0.079 3.730 Hmax_105 : 16.567 17.033 3.403 6.102 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0045 0.9955 DFMC : 0.0056 0.9944 This protein is probably imported in mitochondria. f(Ser) = 0.0448 f(Arg) = 0.0597 CMi = 0.29155 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 335 PKNH_1113200 MNLLILLAIATCLTIGNAFLHRGINYKRTGHAKISNKPTVIQYHHALHKTHTRKGVKKIYSFKRHVSEIWNNIKTRRIEN 80 YMEDFFQTQQVKNTLQNNFLCFKHLFNKCKLDRVIIAVNVALYFYLNRIDKDDEKKIFFHKGNLLEVKEQKAEKYKCNYH 160 DVYKTKNFKTFFTSLFIHKNILHLYFNMSSLISIYKIISQIYTNGQIFVTFILSGVLSNIISYICYVREKKENVLLKNLI 240 LTNTSNENNFLVNKNNKIICGSSSCIYSLYGMHITYIIFFYFKHNYIVNSNFLYNFFYSFVSSLLLENVSHLNHVLGFFC 320 GFFFSSLIVLFDRNA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1113200 22 GNAFLHR|GI 0.132 . PKNH_1113200 27 HRGINYK|RT 0.082 . PKNH_1113200 28 RGINYKR|TG 0.163 . PKNH_1113200 33 KRTGHAK|IS 0.073 . PKNH_1113200 37 HAKISNK|PT 0.072 . PKNH_1113200 49 YHHALHK|TH 0.062 . PKNH_1113200 53 LHKTHTR|KG 0.091 . PKNH_1113200 54 HKTHTRK|GV 0.152 . PKNH_1113200 57 HTRKGVK|KI 0.064 . PKNH_1113200 58 TRKGVKK|IY 0.188 . PKNH_1113200 63 KKIYSFK|RH 0.060 . PKNH_1113200 64 KIYSFKR|HV 0.441 . PKNH_1113200 74 EIWNNIK|TR 0.059 . PKNH_1113200 76 WNNIKTR|RI 0.159 . PKNH_1113200 77 NNIKTRR|IE 0.149 . PKNH_1113200 92 FQTQQVK|NT 0.058 . PKNH_1113200 103 NNFLCFK|HL 0.061 . PKNH_1113200 108 FKHLFNK|CK 0.059 . PKNH_1113200 110 HLFNKCK|LD 0.073 . PKNH_1113200 113 NKCKLDR|VI 0.104 . PKNH_1113200 128 LYFYLNR|ID 0.077 . PKNH_1113200 131 YLNRIDK|DD 0.235 . PKNH_1113200 135 IDKDDEK|KI 0.063 . PKNH_1113200 136 DKDDEKK|IF 0.098 . PKNH_1113200 141 KKIFFHK|GN 0.066 . PKNH_1113200 148 GNLLEVK|EQ 0.058 . PKNH_1113200 151 LEVKEQK|AE 0.059 . PKNH_1113200 154 KEQKAEK|YK 0.068 . PKNH_1113200 156 QKAEKYK|CN 0.073 . PKNH_1113200 164 NYHDVYK|TK 0.061 . PKNH_1113200 166 HDVYKTK|NF 0.076 . PKNH_1113200 169 YKTKNFK|TF 0.066 . PKNH_1113200 179 TSLFIHK|NI 0.062 . PKNH_1113200 196 SLISIYK|II 0.078 . PKNH_1113200 228 SYICYVR|EK 0.068 . PKNH_1113200 230 ICYVREK|KE 0.062 . PKNH_1113200 231 CYVREKK|EN 0.129 . PKNH_1113200 237 KENVLLK|NL 0.068 . PKNH_1113200 254 NNFLVNK|NN 0.060 . PKNH_1113200 257 LVNKNNK|II 0.072 . PKNH_1113200 283 IIFFYFK|HN 0.067 . PKNH_1113200 333 LIVLFDR|NA 0.095 . ____________________________^_________________

  • Fasta :-

    >PKNH_1113200 ATGAACCTTCTAATCCTACTCGCAATTGCAACGTGCCTTACGATAGGAAACGCATTTCTG CACAGAGGGATCAATTATAAGCGGACAGGACATGCGAAAATAAGCAACAAACCCACGGTC ATACAATACCACCATGCCCTTCACAAAACACATACAAGGAAGGGAGTGAAGAAAATTTAC TCTTTCAAGAGACACGTATCAGAAATATGGAATAACATTAAAACGAGGAGGATAGAAAAT TATATGGAAGATTTTTTTCAAACGCAGCAAGTAAAGAATACGCTTCAAAATAATTTCCTC TGTTTTAAACACCTATTTAATAAGTGTAAGCTGGACAGAGTAATTATAGCTGTTAATGTG GCCCTGTATTTTTATTTGAATAGAATTGATAAAGATGATGAGAAGAAGATTTTTTTTCAC AAGGGGAATTTATTGGAGGTAAAAGAACAGAAGGCAGAAAAATACAAATGCAATTATCAC GATGTTTACAAAACAAAAAATTTTAAAACATTTTTCACTTCCCTTTTTATTCACAAAAAT ATATTGCATTTATATTTTAATATGAGTTCTCTAATTTCCATATATAAAATAATTTCGCAA ATATATACAAATGGCCAAATATTTGTTACATTCATCTTGTCAGGTGTCCTGTCCAACATT ATATCGTACATTTGTTACGTGAGAGAAAAGAAGGAAAATGTACTTTTGAAAAATTTAATT TTGACAAATACTTCCAATGAAAATAATTTCCTTGTAAATAAAAATAATAAAATTATCTGT GGAAGCAGTTCCTGTATTTATTCCCTTTATGGAATGCATATCACATATATTATATTTTTT TACTTTAAACATAATTATATTGTGAACAGTAATTTTTTGTACAATTTTTTTTATTCATTT GTTTCATCTCTGCTTCTCGAAAATGTCAGCCACTTGAACCATGTGTTGGGCTTCTTCTGT GGTTTTTTCTTCTCCTCCCTCATAGTGCTCTTTGACAGGAATGCCTAG
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  • Fasta :-

    MNLLILLAIATCLTIGNAFLHRGINYKRTGHAKISNKPTVIQYHHALHKTHTRKGVKKIY SFKRHVSEIWNNIKTRRIENYMEDFFQTQQVKNTLQNNFLCFKHLFNKCKLDRVIIAVNV ALYFYLNRIDKDDEKKIFFHKGNLLEVKEQKAEKYKCNYHDVYKTKNFKTFFTSLFIHKN ILHLYFNMSSLISIYKIISQIYTNGQIFVTFILSGVLSNIISYICYVREKKENVLLKNLI LTNTSNENNFLVNKNNKIICGSSSCIYSLYGMHITYIIFFYFKHNYIVNSNFLYNFFYSF VSSLLLENVSHLNHVLGFFCGFFFSSLIVLFDRNA

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PK13_5810c      PKH_111270      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India