PKNH_1122500 | E3 ubiquitin-protein ligase RNF5, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >PKNH_1122500 MNEKENEYDSLYDVIYDYDVNEEFLNRKDNNDESPEPLLCDIKSKLTSKGERESLADERS GSSHPNYAKKNESEENSLQLSSIRLNDKNGDCSGEGQMKSTLTPQNNAPDSIKESEISSG NVDPFKKREDLPFLKSSTQQNDSGNAEDGNSNAEAREEVKFVNPEKGGNHSPVVDAFTNS TPKHTVGITNCENYNKEAPPHMRILSTDFQSTYSWQNVTVGKNNNNIVNRKNVLGESTPK EQGTREECPQRDELKEGGAYHNNDVMIKGSGVKEKYKKLTFEDDIYKENADGKVEVQKEQ GPNEDEKKKLEEKSDISEDKKNVEHSNDNNNSEEKNKTEINSNKNTTSENDGTSTFECNI CFDDVRDPVVTKCGHLFCWLCLSAWIKKNNDCPVCKAEVSRENVIPLYGRGKNSTEHKYS NKEEPRPTPKRKESVRRNNGYSNNVGLRASFGVWVNPFSFGMSYTNMTEEPYFYENRGGD NRTQAETYQAEAASSFFFFLGFFLSLYILFYSS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1122500.fa Sequence name : PKNH_1122500 Sequence length : 513 VALUES OF COMPUTED PARAMETERS Coef20 : 2.567 CoefTot : -0.134 ChDiff : -22 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.488 2.071 0.345 0.873 MesoH : -0.424 -0.083 -0.421 0.191 MuHd_075 : 32.354 18.843 7.739 4.305 MuHd_095 : 24.900 16.517 6.875 4.578 MuHd_100 : 29.388 19.340 7.554 5.462 MuHd_105 : 28.821 19.188 7.032 5.573 Hmax_075 : -3.617 3.267 -3.174 1.680 Hmax_095 : -1.600 3.400 -2.424 2.420 Hmax_100 : -1.600 2.500 -2.424 2.420 Hmax_105 : -5.687 3.850 -3.289 2.205 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9868 0.0132 DFMC : 0.9787 0.0213
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 513 PKNH_1122500 MNEKENEYDSLYDVIYDYDVNEEFLNRKDNNDESPEPLLCDIKSKLTSKGERESLADERSGSSHPNYAKKNESEENSLQL 80 SSIRLNDKNGDCSGEGQMKSTLTPQNNAPDSIKESEISSGNVDPFKKREDLPFLKSSTQQNDSGNAEDGNSNAEAREEVK 160 FVNPEKGGNHSPVVDAFTNSTPKHTVGITNCENYNKEAPPHMRILSTDFQSTYSWQNVTVGKNNNNIVNRKNVLGESTPK 240 EQGTREECPQRDELKEGGAYHNNDVMIKGSGVKEKYKKLTFEDDIYKENADGKVEVQKEQGPNEDEKKKLEEKSDISEDK 320 KNVEHSNDNNNSEEKNKTEINSNKNTTSENDGTSTFECNICFDDVRDPVVTKCGHLFCWLCLSAWIKKNNDCPVCKAEVS 400 RENVIPLYGRGKNSTEHKYSNKEEPRPTPKRKESVRRNNGYSNNVGLRASFGVWVNPFSFGMSYTNMTEEPYFYENRGGD 480 NRTQAETYQAEAASSFFFFLGFFLSLYILFYSS 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1122500 4 ---MNEK|EN 0.056 . PKNH_1122500 27 NEEFLNR|KD 0.072 . PKNH_1122500 28 EEFLNRK|DN 0.084 . PKNH_1122500 43 PLLCDIK|SK 0.062 . PKNH_1122500 45 LCDIKSK|LT 0.096 . PKNH_1122500 49 KSKLTSK|GE 0.069 . PKNH_1122500 52 LTSKGER|ES 0.099 . PKNH_1122500 59 ESLADER|SG 0.105 . PKNH_1122500 69 SHPNYAK|KN 0.076 . PKNH_1122500 70 HPNYAKK|NE 0.127 . PKNH_1122500 84 LQLSSIR|LN 0.093 . PKNH_1122500 88 SIRLNDK|NG 0.066 . PKNH_1122500 99 SGEGQMK|ST 0.083 . PKNH_1122500 113 NAPDSIK|ES 0.063 . PKNH_1122500 126 GNVDPFK|KR 0.066 . PKNH_1122500 127 NVDPFKK|RE 0.067 . PKNH_1122500 128 VDPFKKR|ED 0.160 . PKNH_1122500 135 EDLPFLK|SS 0.080 . PKNH_1122500 156 NSNAEAR|EE 0.096 . PKNH_1122500 160 EAREEVK|FV 0.086 . PKNH_1122500 166 KFVNPEK|GG 0.064 . PKNH_1122500 183 FTNSTPK|HT 0.069 . PKNH_1122500 196 NCENYNK|EA 0.066 . PKNH_1122500 203 EAPPHMR|IL 0.120 . PKNH_1122500 222 QNVTVGK|NN 0.068 . PKNH_1122500 230 NNNIVNR|KN 0.115 . PKNH_1122500 231 NNIVNRK|NV 0.092 . PKNH_1122500 240 LGESTPK|EQ 0.068 . PKNH_1122500 245 PKEQGTR|EE 0.084 . PKNH_1122500 251 REECPQR|DE 0.101 . PKNH_1122500 255 PQRDELK|EG 0.070 . PKNH_1122500 268 NNDVMIK|GS 0.081 . PKNH_1122500 273 IKGSGVK|EK 0.064 . PKNH_1122500 275 GSGVKEK|YK 0.079 . PKNH_1122500 277 GVKEKYK|KL 0.067 . PKNH_1122500 278 VKEKYKK|LT 0.088 . PKNH_1122500 287 FEDDIYK|EN 0.059 . PKNH_1122500 293 KENADGK|VE 0.070 . PKNH_1122500 298 GKVEVQK|EQ 0.088 . PKNH_1122500 307 GPNEDEK|KK 0.066 . PKNH_1122500 308 PNEDEKK|KL 0.108 . PKNH_1122500 309 NEDEKKK|LE 0.101 . PKNH_1122500 313 KKKLEEK|SD 0.071 . PKNH_1122500 320 SDISEDK|KN 0.061 . PKNH_1122500 321 DISEDKK|NV 0.167 . PKNH_1122500 335 NNNSEEK|NK 0.065 . PKNH_1122500 337 NSEEKNK|TE 0.064 . PKNH_1122500 344 TEINSNK|NT 0.076 . PKNH_1122500 366 ICFDDVR|DP 0.077 . PKNH_1122500 372 RDPVVTK|CG 0.057 . PKNH_1122500 387 CLSAWIK|KN 0.071 . PKNH_1122500 388 LSAWIKK|NN 0.090 . PKNH_1122500 396 NDCPVCK|AE 0.062 . PKNH_1122500 401 CKAEVSR|EN 0.090 . PKNH_1122500 410 VIPLYGR|GK 0.080 . PKNH_1122500 412 PLYGRGK|NS 0.060 . PKNH_1122500 418 KNSTEHK|YS 0.105 . PKNH_1122500 422 EHKYSNK|EE 0.056 . PKNH_1122500 426 SNKEEPR|PT 0.096 . PKNH_1122500 430 EPRPTPK|RK 0.071 . PKNH_1122500 431 PRPTPKR|KE 0.171 . PKNH_1122500 432 RPTPKRK|ES 0.094 . PKNH_1122500 436 KRKESVR|RN 0.096 . PKNH_1122500 437 RKESVRR|NN 0.201 . PKNH_1122500 448 SNNVGLR|AS 0.110 . PKNH_1122500 477 PYFYENR|GG 0.079 . PKNH_1122500 482 NRGGDNR|TQ 0.076 . ____________________________^_________________

  • Fasta :-

    >PKNH_1122500 ATGAATGAGAAAGAAAACGAATATGATTCGCTGTACGATGTAATATACGATTATGATGTT AACGAAGAATTCCTCAATAGGAAGGACAACAACGATGAGTCTCCAGAACCGCTGCTCTGT GACATAAAAAGTAAATTAACTTCCAAGGGAGAAAGAGAAAGCTTGGCGGATGAGCGTTCA GGAAGTTCCCACCCAAATTACGCAAAAAAAAATGAAAGCGAAGAAAACTCTTTACAATTA TCGTCCATACGGTTAAACGATAAAAATGGCGATTGTTCAGGGGAAGGTCAAATGAAGAGT ACGTTGACGCCTCAGAACAACGCCCCAGACAGTATCAAAGAGAGCGAAATAAGCTCCGGT AACGTGGACCCTTTTAAAAAAAGGGAGGATCTGCCATTCTTAAAAAGTAGCACACAACAG AATGATAGTGGAAACGCCGAGGATGGTAATTCCAATGCGGAAGCAAGAGAGGAGGTCAAA TTTGTGAACCCCGAAAAGGGGGGAAATCACTCCCCAGTTGTTGACGCATTTACAAATAGC ACCCCTAAACATACAGTGGGAATAACCAACTGCGAAAACTACAATAAAGAAGCGCCTCCC CATATGAGGATACTATCAACCGATTTCCAGAGTACATACAGTTGGCAAAACGTAACTGTA GGCAAAAATAATAACAACATAGTGAATCGTAAAAACGTATTAGGAGAAAGTACCCCCAAG GAACAGGGTACCAGAGAGGAGTGTCCTCAGAGGGATGAGTTAAAAGAGGGGGGGGCATAT CACAATAACGACGTTATGATAAAAGGTAGTGGGGTAAAGGAAAAATACAAAAAGCTTACC TTCGAGGATGATATATATAAAGAGAATGCAGATGGAAAAGTTGAGGTACAAAAGGAACAA GGCCCAAATGAGGATGAAAAAAAAAAATTGGAAGAAAAAAGTGACATTAGTGAAGACAAG AAAAATGTAGAACACAGTAATGATAATAACAATTCGGAAGAAAAAAACAAAACGGAAATA AATTCCAACAAGAATACAACATCAGAAAATGATGGTACAAGTACATTCGAATGTAACATT TGTTTTGATGATGTGAGAGACCCAGTGGTAACGAAATGTGGCCATCTATTCTGTTGGTTA TGTCTCTCCGCTTGGATTAAAAAAAATAATGACTGTCCTGTGTGCAAAGCTGAAGTTTCA AGGGAAAATGTAATACCTCTGTATGGAAGGGGAAAAAATAGCACAGAACATAAATATTCG AATAAGGAAGAACCTAGACCCACTCCGAAAAGAAAAGAAAGTGTTAGGAGAAATAATGGT TATTCTAACAATGTAGGGTTAAGGGCTTCCTTTGGCGTTTGGGTGAACCCCTTTTCCTTT GGAATGTCCTACACCAACATGACGGAAGAGCCGTACTTTTATGAAAACCGTGGTGGTGAC AACAGAACCCAGGCAGAAACGTATCAAGCGGAAGCTGCATCCTCCTTTTTCTTTTTCCTG GGTTTTTTTTTGTCCCTCTATATTTTGTTCTACTCATCTTAG
  • Download Fasta

  • Fasta :-

    No Results
  • title: Zn binding site
  • coordinates: C358,C361,C373,H375,C378,C381,C392,C395
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_112250054 SGERESLADE0.997unspPKNH_112250054 SGERESLADE0.997unspPKNH_112250054 SGERESLADE0.997unspPKNH_112250073 SKKNESEENS0.995unspPKNH_1122500111 SNAPDSIKES0.998unspPKNH_1122500286 YEDDIYKENA0.991unspPKNH_1122500420 SEHKYSNKEE0.997unspPKNH_1122500428 TEPRPTPKRK0.994unspPKNH_1122500434 SKRKESVRRN0.996unspPKNH_112250034 SNNDESPEPL0.992unspPKNH_112250048 SSKLTSKGER0.995unsp

PK6_2480c      PKH_112200      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India