PKNH_1141700 | proteasome subunit alpha type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1141700OTHER0.9993130.0000840.000603
No Results

  • Fasta :-

    >PKNH_1141700 MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGIIIATEKKSPNELIEEN SIYKIQQISEHIGIVYAGMPGDFRVLLKRARKEAIRYSLQYGNEILVKELVKEIASIVQE FTQTGGVRPFGLSLLICGTDAYGYHLYQIDPSGCYFNWLATCIGKDYQNNISFLEKRYST DIEVEDAIHTAILTLKESYEGVMNEKNIEIGVACNGKPFKILTPNEIKDYLIEIE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1141700.fa Sequence name : PKNH_1141700 Sequence length : 235 VALUES OF COMPUTED PARAMETERS Coef20 : 3.733 CoefTot : 0.141 ChDiff : -6 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.759 0.953 0.082 0.491 MesoH : -0.470 0.259 -0.312 0.244 MuHd_075 : 12.456 2.667 3.042 1.246 MuHd_095 : 16.939 8.441 3.504 3.249 MuHd_100 : 11.572 6.693 2.679 2.488 MuHd_105 : 2.805 4.253 2.625 1.413 Hmax_075 : 8.313 2.000 -0.167 2.370 Hmax_095 : 11.500 3.762 0.023 2.958 Hmax_100 : 10.200 5.200 0.889 3.430 Hmax_105 : 8.867 2.100 0.027 2.438 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9151 0.0849 DFMC : 0.9125 0.0875
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 235 PKNH_1141700 MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGIIIATEKKSPNELIEENSIYKIQQISEHIGIVYAGMP 80 GDFRVLLKRARKEAIRYSLQYGNEILVKELVKEIASIVQEFTQTGGVRPFGLSLLICGTDAYGYHLYQIDPSGCYFNWLA 160 TCIGKDYQNNISFLEKRYSTDIEVEDAIHTAILTLKESYEGVMNEKNIEIGVACNGKPFKILTPNEIKDYLIEIE 240 ................................................................................ 80 ................................................................................ 160 ........................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1141700 18 TFSPTGK|LV 0.080 . PKNH_1141700 28 IEYALNR|VS 0.082 . PKNH_1141700 39 SPALGIR|AK 0.108 . PKNH_1141700 41 ALGIRAK|NG 0.065 . PKNH_1141700 50 IIIATEK|KS 0.059 . PKNH_1141700 51 IIATEKK|SP 0.119 . PKNH_1141700 64 EENSIYK|IQ 0.066 . PKNH_1141700 84 GMPGDFR|VL 0.065 . PKNH_1141700 88 DFRVLLK|RA 0.064 . PKNH_1141700 89 FRVLLKR|AR 0.182 . PKNH_1141700 91 VLLKRAR|KE 0.069 . PKNH_1141700 92 LLKRARK|EA 0.204 . PKNH_1141700 96 ARKEAIR|YS 0.106 . PKNH_1141700 108 GNEILVK|EL 0.068 . PKNH_1141700 112 LVKELVK|EI 0.064 . PKNH_1141700 128 TQTGGVR|PF 0.098 . PKNH_1141700 165 LATCIGK|DY 0.066 . PKNH_1141700 176 NISFLEK|RY 0.078 . PKNH_1141700 177 ISFLEKR|YS 0.280 . PKNH_1141700 196 TAILTLK|ES 0.071 . PKNH_1141700 206 EGVMNEK|NI 0.069 . PKNH_1141700 217 GVACNGK|PF 0.064 . PKNH_1141700 220 CNGKPFK|IL 0.075 . PKNH_1141700 228 LTPNEIK|DY 0.062 . ____________________________^_________________

  • Fasta :-

    >PKNH_1141700 ATGGCTGATGGAGAGTACAGCTTCTCCTTGACAACCTTTAGCCCCACGGGGAAGTTAGTG CAAATTGAATATGCCTTGAATAGAGTTTCCAGCAGTTCACCTGCTTTAGGCATCCGAGCT AAAAATGGTATCATAATCGCAACGGAGAAGAAGAGCCCAAATGAACTGATAGAAGAAAAC AGTATATACAAAATTCAGCAGATTAGCGAACACATCGGAATTGTGTACGCAGGAATGCCT GGAGACTTCCGAGTGCTACTAAAGCGTGCCCGTAAGGAAGCTATAAGATACTCCCTACAG TATGGAAATGAAATATTGGTAAAAGAACTTGTTAAAGAAATAGCATCCATAGTACAGGAG TTCACCCAGACAGGTGGAGTGAGACCATTTGGATTGTCTCTACTGATCTGTGGAACAGAT GCGTATGGATACCACCTGTATCAAATTGATCCCTCTGGATGTTACTTTAATTGGCTAGCT ACATGCATAGGAAAGGATTACCAAAATAATATTTCCTTTTTGGAAAAAAGGTACAGTACC GATATCGAGGTCGAGGACGCCATACATACAGCCATCCTCACACTCAAGGAGAGTTACGAG GGCGTCATGAACGAGAAGAACATCGAAATAGGTGTGGCCTGCAACGGCAAGCCCTTTAAA ATTCTAACCCCCAACGAGATTAAGGATTACCTCATTGAAATAGAGTGA
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  • Fasta :-

    MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGIIIATEKKSPNELIEEN SIYKIQQISEHIGIVYAGMPGDFRVLLKRARKEAIRYSLQYGNEILVKELVKEIASIVQE FTQTGGVRPFGLSLLICGTDAYGYHLYQIDPSGCYFNWLATCIGKDYQNNISFLEKRYST DIEVEDAIHTAILTLKESYEGVMNEKNIEIGVACNGKPFKILTPNEIKDYLIEIE

  • title: active site
  • coordinates: S33,E49,K51,K64,K165
No Results
No Results
IDSitePeptideScoreMethod
PKNH_114170052 STEKKSPNEL0.994unsp

PK6_0690c      PKH_114070      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India