PKNH_1216600 | ATP-dependent zinc metalloprotease FTSH, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1216600OTHER0.5380510.0000170.461933
No Results

  • Fasta :-

    >PKNH_1216600 MLLLRNIVVVHQKRSHMFYVGNLAKVQCLLNNKRFFTLVKNERLDRLKREIRYKPNDNFL ILQFYKEANVHNPNEVIKHYESNNNIKNESITKEYIKALVYTNKLKYTNLDNLKYDSDPM LYRRYMEESSHSNDIHNDRSSVYDTGNLNADSAYVNMGQSAQRIEYVDKKKGGHSEIHTL QIDPKNPLKVSVVDGSKRGMWGLLKSTIGFLILVAAASVYLEGVSQNVQKGIGVSNKKII PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIA RAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSN RDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIK GRYEILKMYSNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKAVDMNSI EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVT WKIPISDKYSQKIKDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMN YGVGINEENISMFLQDKKNISEEMKIKIDKSIQKILLDSYNRAKKVLNQHIDELHRVASA LVEYETLTSDEIKLAMQGKHDQIRKNRELKQKEFNLKDSRIS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1216600.fa Sequence name : PKNH_1216600 Sequence length : 702 VALUES OF COMPUTED PARAMETERS Coef20 : 4.422 CoefTot : -0.805 ChDiff : 14 ZoneTo : 41 KR : 7 DE : 0 CleavSite : 44 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.600 2.047 0.269 0.751 MesoH : -0.634 0.417 -0.401 0.216 MuHd_075 : 22.048 17.821 7.487 5.743 MuHd_095 : 18.763 11.267 5.659 4.603 MuHd_100 : 17.144 14.285 5.302 4.080 MuHd_105 : 18.451 18.283 5.520 5.071 Hmax_075 : 9.100 16.800 3.920 4.740 Hmax_095 : 10.412 8.925 0.042 4.883 Hmax_100 : 9.100 12.000 0.048 3.540 Hmax_105 : 1.200 14.000 -0.047 2.707 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4140 0.5860 DFMC : 0.3234 0.6766 This protein is probably imported in mitochondria. f(Ser) = 0.0244 f(Arg) = 0.0732 CMi = 0.14144 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 702 PKNH_1216600 MLLLRNIVVVHQKRSHMFYVGNLAKVQCLLNNKRFFTLVKNERLDRLKREIRYKPNDNFLILQFYKEANVHNPNEVIKHY 80 ESNNNIKNESITKEYIKALVYTNKLKYTNLDNLKYDSDPMLYRRYMEESSHSNDIHNDRSSVYDTGNLNADSAYVNMGQS 160 AQRIEYVDKKKGGHSEIHTLQIDPKNPLKVSVVDGSKRGMWGLLKSTIGFLILVAAASVYLEGVSQNVQKGIGVSNKKII 240 PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFE 320 EMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSNRDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDK 400 ALVRPGRLDKTIVVPLPDIKGRYEILKMYSNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKAVDMNSI 480 EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVTWKIPISDKYSQKIKDVQSEI 560 DILMGGLVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMNYGVGINEENISMFLQDKKNISEEMKIKIDKSIQKILLDSY 640 NRAKKVLNQHIDELHRVASALVEYETLTSDEIKLAMQGKHDQIRKNRELKQKEFNLKDSRIS 720 ................................................P............................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................P....................................... 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .............................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ PKNH_1216600 5 --MLLLR|NI 0.071 . PKNH_1216600 13 IVVVHQK|RS 0.060 . PKNH_1216600 14 VVVHQKR|SH 0.229 . PKNH_1216600 25 YVGNLAK|VQ 0.053 . PKNH_1216600 33 QCLLNNK|RF 0.056 . PKNH_1216600 34 CLLNNKR|FF 0.139 . PKNH_1216600 40 RFFTLVK|NE 0.053 . PKNH_1216600 43 TLVKNER|LD 0.077 . PKNH_1216600 46 KNERLDR|LK 0.182 . PKNH_1216600 48 ERLDRLK|RE 0.057 . PKNH_1216600 49 RLDRLKR|EI 0.516 *ProP* PKNH_1216600 52 RLKREIR|YK 0.176 . PKNH_1216600 54 KREIRYK|PN 0.074 . PKNH_1216600 66 LILQFYK|EA 0.069 . PKNH_1216600 78 NPNEVIK|HY 0.082 . PKNH_1216600 87 ESNNNIK|NE 0.069 . PKNH_1216600 93 KNESITK|EY 0.066 . PKNH_1216600 97 ITKEYIK|AL 0.059 . PKNH_1216600 104 ALVYTNK|LK 0.069 . PKNH_1216600 106 VYTNKLK|YT 0.060 . PKNH_1216600 114 TNLDNLK|YD 0.062 . PKNH_1216600 123 SDPMLYR|RY 0.080 . PKNH_1216600 124 DPMLYRR|YM 0.196 . PKNH_1216600 139 NDIHNDR|SS 0.103 . PKNH_1216600 163 MGQSAQR|IE 0.073 . PKNH_1216600 169 RIEYVDK|KK 0.069 . PKNH_1216600 170 IEYVDKK|KG 0.125 . PKNH_1216600 171 EYVDKKK|GG 0.123 . PKNH_1216600 185 TLQIDPK|NP 0.062 . PKNH_1216600 189 DPKNPLK|VS 0.056 . PKNH_1216600 197 SVVDGSK|RG 0.056 . PKNH_1216600 198 VVDGSKR|GM 0.179 . PKNH_1216600 205 GMWGLLK|ST 0.073 . PKNH_1216600 230 VSQNVQK|GI 0.099 . PKNH_1216600 237 GIGVSNK|KI 0.092 . PKNH_1216600 238 IGVSNKK|II 0.083 . PKNH_1216600 246 IPVENVK|VT 0.064 . PKNH_1216600 253 VTFADVK|GC 0.065 . PKNH_1216600 259 KGCDEVK|QE 0.058 . PKNH_1216600 270 EIIDYLK|NS 0.056 . PKNH_1216600 274 YLKNSDK|FT 0.072 . PKNH_1216600 277 NSDKFTK|IG 0.065 . PKNH_1216600 281 FTKIGAK|LP 0.060 . PKNH_1216600 284 IGAKLPK|GI 0.075 . PKNH_1216600 296 GEPGTGK|TL 0.058 . PKNH_1216600 301 GKTLIAR|AI 0.097 . PKNH_1216600 329 FVGVGAR|RI 0.096 . PKNH_1216600 330 VGVGARR|IR 0.094 . PKNH_1216600 332 VGARRIR|EL 0.288 . PKNH_1216600 339 ELFQAAK|KH 0.060 . PKNH_1216600 340 LFQAAKK|HA 0.098 . PKNH_1216600 357 IDAVGSK|RS 0.057 . PKNH_1216600 358 DAVGSKR|SN 0.253 . PKNH_1216600 361 GSKRSNR|DN 0.663 *ProP* PKNH_1216600 367 RDNSAVR|MT 0.105 . PKNH_1216600 400 FPQSLDK|AL 0.061 . PKNH_1216600 404 LDKALVR|PG 0.073 . PKNH_1216600 407 ALVRPGR|LD 0.195 . PKNH_1216600 410 RPGRLDK|TI 0.134 . PKNH_1216600 420 VPLPDIK|GR 0.066 . PKNH_1216600 422 LPDIKGR|YE 0.101 . PKNH_1216600 427 GRYEILK|MY 0.083 . PKNH_1216600 432 LKMYSNK|IV 0.083 . PKNH_1216600 437 NKIVLSK|DV 0.094 . PKNH_1216600 446 DLHVLSR|RT 0.078 . PKNH_1216600 447 LHVLSRR|TV 0.256 . PKNH_1216600 466 LNIAAIK|CS 0.062 . PKNH_1216600 472 KCSVEGK|KA 0.083 . PKNH_1216600 473 CSVEGKK|AV 0.124 . PKNH_1216600 486 IEQAFDR|VV 0.121 . PKNH_1216600 493 VVVGLQR|KS 0.065 . PKNH_1216600 494 VVGLQRK|SP 0.087 . PKNH_1216600 502 PLNEEEK|NI 0.069 . PKNH_1216600 520 LVNFYTK|GS 0.085 . PKNH_1216600 527 GSDPVHK|AT 0.077 . PKNH_1216600 533 KATIMPR|GM 0.113 . PKNH_1216600 542 SLGVTWK|IP 0.062 . PKNH_1216600 548 KIPISDK|YS 0.070 . PKNH_1216600 552 SDKYSQK|IK 0.070 . PKNH_1216600 554 KYSQKIK|DV 0.125 . PKNH_1216600 576 EEIIFGK|NN 0.063 . PKNH_1216600 589 CSSDLQR|AT 0.147 . PKNH_1216600 617 SMFLQDK|KN 0.065 . PKNH_1216600 618 MFLQDKK|NI 0.107 . PKNH_1216600 625 NISEEMK|IK 0.070 . PKNH_1216600 627 SEEMKIK|ID 0.068 . PKNH_1216600 630 MKIKIDK|SI 0.113 . PKNH_1216600 634 IDKSIQK|IL 0.062 . PKNH_1216600 642 LLDSYNR|AK 0.069 . PKNH_1216600 644 DSYNRAK|KV 0.077 . PKNH_1216600 645 SYNRAKK|VL 0.349 . PKNH_1216600 656 HIDELHR|VA 0.089 . PKNH_1216600 673 LTSDEIK|LA 0.096 . PKNH_1216600 679 KLAMQGK|HD 0.069 . PKNH_1216600 684 GKHDQIR|KN 0.098 . PKNH_1216600 685 KHDQIRK|NR 0.077 . PKNH_1216600 687 DQIRKNR|EL 0.421 . PKNH_1216600 690 RKNRELK|QK 0.191 . PKNH_1216600 692 NRELKQK|EF 0.067 . PKNH_1216600 697 QKEFNLK|DS 0.074 . PKNH_1216600 700 FNLKDSR|IS 0.075 . ____________________________^_________________

  • Fasta :-

    >PKNH_1216600 ATGCTGTTGCTACGGAACATCGTGGTGGTGCACCAAAAGAGGAGCCACATGTTCTATGTG GGAAATCTGGCAAAGGTGCAATGCCTCCTGAACAACAAAAGGTTCTTTACGCTCGTGAAA AACGAGAGGCTGGATAGACTAAAGAGGGAAATCCGATACAAGCCAAATGATAATTTCCTT ATATTACAGTTTTATAAGGAAGCAAATGTACACAATCCAAATGAAGTTATAAAACATTAC GAGAGCAATAATAACATCAAAAATGAAAGCATAACTAAGGAGTACATAAAAGCGCTAGTG TATACAAATAAGTTGAAATACACCAACTTGGATAATCTAAAGTATGATAGCGACCCCATG TTATATAGAAGATATATGGAGGAGTCGAGCCATTCAAATGATATCCATAACGACCGGTCC AGTGTGTATGATACGGGTAATTTGAACGCGGATTCTGCCTACGTTAATATGGGTCAGTCA GCTCAGAGAATAGAATATGTAGATAAAAAAAAAGGGGGGCACAGTGAAATTCATACTTTA CAAATAGACCCCAAGAATCCTTTAAAAGTGTCTGTAGTAGATGGAAGCAAAAGAGGCATG TGGGGATTACTCAAGTCAACTATCGGGTTTTTAATTCTCGTGGCGGCGGCAAGTGTATAC CTGGAGGGAGTATCCCAGAATGTCCAGAAAGGTATAGGAGTATCAAATAAGAAAATAATT CCAGTGGAAAATGTAAAGGTCACCTTTGCAGATGTAAAAGGGTGTGATGAAGTGAAACAA GAACTTGAAGAAATAATTGATTATTTGAAAAACTCAGATAAATTTACAAAAATAGGTGCC AAGTTGCCCAAGGGGATACTCCTATCCGGCGAACCGGGCACAGGAAAAACGTTAATTGCT AGAGCCATAGCGGGGGAAGCCAATGTCCCATTCATTCAAGCATCAGGATCCGAATTTGAG GAAATGTTCGTAGGAGTTGGTGCCAGGAGGATAAGAGAGCTTTTCCAGGCTGCCAAAAAA CATGCTCCATGTATCGTTTTTATTGATGAAATTGATGCAGTTGGGTCTAAGAGAAGTAAT CGAGATAACAGTGCTGTGAGGATGACACTAAACCAATTACTGGTAGAATTGGACGGGTTT GAACAGAACGAAGGAATAGTAGTAATATGTGCAACAAACTTCCCACAAAGCTTAGACAAA GCGTTGGTAAGACCAGGAAGATTGGACAAAACCATTGTAGTGCCATTGCCAGATATAAAA GGTAGGTATGAAATTTTAAAAATGTATAGCAACAAAATTGTGCTGTCGAAGGATGTTGAT TTGCATGTCTTATCGAGAAGAACTGTTGGAATGACAGGAGCAGATTTGAATAATATATTA AATATAGCTGCTATTAAATGCTCTGTGGAAGGAAAGAAAGCGGTGGATATGAATTCAATT GAACAGGCATTTGATAGAGTCGTTGTGGGATTACAAAGGAAATCTCCCCTAAATGAAGAA GAGAAAAATATTACAGCTTATCACGAAGGTGGTCATACTTTAGTTAATTTTTACACAAAA GGTTCTGACCCTGTCCATAAGGCAACCATTATGCCTAGGGGTATGTCCCTGGGAGTTACA TGGAAAATCCCTATCAGTGATAAGTATAGCCAAAAAATTAAGGACGTACAAAGCGAAATA GATATCCTCATGGGAGGGCTAGTTTCTGAAGAAATTATTTTTGGCAAGAATAATGTGACC ACTGGGTGTTCTAGTGATTTGCAGAGGGCTACTCACATAGCACAATCTCTTGTTATGAAT TATGGAGTAGGAATTAATGAAGAAAATATATCCATGTTCTTGCAGGATAAAAAAAACATT AGCGAAGAAATGAAAATAAAAATTGATAAATCTATTCAAAAAATATTATTAGATTCTTAT AACAGAGCCAAAAAGGTACTGAATCAACACATTGATGAACTACACAGGGTTGCTTCTGCC CTCGTAGAATATGAAACTTTGACTAGCGATGAAATCAAACTAGCTATGCAAGGGAAGCAT GATCAGATAAGAAAAAATAGAGAACTGAAACAGAAGGAATTTAACTTGAAGGATAGCAGG ATTTCGTAA
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  • Fasta :-

    MLLLRNIVVVHQKRSHMFYVGNLAKVQCLLNNKRFFTLVKNERLDRLKREIRYKPNDNFL ILQFYKEANVHNPNEVIKHYESNNNIKNESITKEYIKALVYTNKLKYTNLDNLKYDSDPM LYRRYMEESSHSNDIHNDRSSVYDTGNLNADSAYVNMGQSAQRIEYVDKKKGGHSEIHTL QIDPKNPLKVSVVDGSKRGMWGLLKSTIGFLILVAAASVYLEGVSQNVQKGIGVSNKKII PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIA RAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSN RDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIK GRYEILKMYSNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKAVDMNSI EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVT WKIPISDKYSQKIKDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMN YGVGINEENISMFLQDKKNISEEMKIKIDKSIQKILLDSYNRAKKVLNQHIDELHRVASA LVEYETLTSDEIKLAMQGKHDQIRKNRELKQKEFNLKDSRIS

  • title: ATP binding site
  • coordinates: E291,P292,G293,T294,G295,K296,T297,L298,D349,N393
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_1216600272 SYLKNSDKFT0.992unspPKNH_1216600272 SYLKNSDKFT0.992unspPKNH_1216600272 SYLKNSDKFT0.992unspPKNH_1216600359 SGSKRSNRDN0.992unspPKNH_1216600495 SLQRKSPLNE0.995unspPKNH_1216600558 SKDVQSEIDI0.993unspPKNH_1216600141 SNDRSSVYDT0.998unspPKNH_1216600154 YADSAYVNMG0.99unsp

PK14_2955c      PKH_124070      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India