PKNH_1256100 | rhomboid protease ROM6, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PKNH_1256100OTHER0.9118210.0000450.088134
No Results

  • Fasta :-

    >PKNH_1256100 MFNAGRYFRAGYHKKKIFHVKGSRQFYGFAKCRKVQTNAIKRKDRIKRGKFLQFKEKLQL IIFSSVYFFACDYVYHVYLLRSNDSRPANHASNNTGEDVRNDAKCKDQHSGGKGGVGTTM MEYIKWMNIFSSAQGKDNQELKQQDNECTRKNDGHKMKNQKDSHKKDHLLNNRGDIKICS VCEEDPYEIKINRFKRSSGKEESSQTGKGEKYGESFYFGNQRDQPPSHDRSSSGRSPPNN SIPQRSSIGGEEKNMKNLFVSNVYRNDLFNGCNLFLFANGVVFLCWRLSEIAGNKKFFHF MCRNFICSYENIRRKYYHTFFTAAISHITLPHFLFNMWAFHTISNTLLSPEIKENKTNYY FFFNYKSSVLEKKMTDKDIMKIYALSSIVSTVPYILLHRSNQLLGASGAVMGLVYILSTV KPNEIFVSLFPLPYLKMTSLQLCHLSILTNFIFLFYRRNHFNVAWLAHLFGLMGGALYNV YQRRINSNKNYYPFIELSVKNGSIDYLNSYLDFVDFLKCLQLQIRIFFSLDPRAIQSMNR KIVSIKNMQSQRRIKYHKLKVKNLEAMSK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1256100.fa Sequence name : PKNH_1256100 Sequence length : 569 VALUES OF COMPUTED PARAMETERS Coef20 : 3.694 CoefTot : -2.080 ChDiff : 43 ZoneTo : 43 KR : 13 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.812 1.718 0.320 0.675 MesoH : 0.639 0.988 -0.080 0.423 MuHd_075 : 32.161 21.879 9.897 7.978 MuHd_095 : 28.185 13.761 9.032 5.965 MuHd_100 : 26.752 15.329 8.685 5.118 MuHd_105 : 37.378 21.104 11.277 7.656 Hmax_075 : 9.100 13.067 3.019 4.013 Hmax_095 : 2.300 5.100 0.297 3.130 Hmax_100 : 3.200 4.200 0.003 2.290 Hmax_105 : 7.933 8.633 1.828 3.100 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0230 0.9770 DFMC : 0.0268 0.9732 This protein is probably imported in mitochondria. f(Ser) = 0.0233 f(Arg) = 0.1163 CMi = 0.09990 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 569 PKNH_1256100 MFNAGRYFRAGYHKKKIFHVKGSRQFYGFAKCRKVQTNAIKRKDRIKRGKFLQFKEKLQLIIFSSVYFFACDYVYHVYLL 80 RSNDSRPANHASNNTGEDVRNDAKCKDQHSGGKGGVGTTMMEYIKWMNIFSSAQGKDNQELKQQDNECTRKNDGHKMKNQ 160 KDSHKKDHLLNNRGDIKICSVCEEDPYEIKINRFKRSSGKEESSQTGKGEKYGESFYFGNQRDQPPSHDRSSSGRSPPNN 240 SIPQRSSIGGEEKNMKNLFVSNVYRNDLFNGCNLFLFANGVVFLCWRLSEIAGNKKFFHFMCRNFICSYENIRRKYYHTF 320 FTAAISHITLPHFLFNMWAFHTISNTLLSPEIKENKTNYYFFFNYKSSVLEKKMTDKDIMKIYALSSIVSTVPYILLHRS 400 NQLLGASGAVMGLVYILSTVKPNEIFVSLFPLPYLKMTSLQLCHLSILTNFIFLFYRRNHFNVAWLAHLFGLMGGALYNV 480 YQRRINSNKNYYPFIELSVKNGSIDYLNSYLDFVDFLKCLQLQIRIFFSLDPRAIQSMNRKIVSIKNMQSQRRIKYHKLK 560 VKNLEAMSK 640 ...............................................P................................ 80 ................................................................................ 160 ...................................P............................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ......... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ PKNH_1256100 6 -MFNAGR|YF 0.102 . PKNH_1256100 9 NAGRYFR|AG 0.256 . PKNH_1256100 14 FRAGYHK|KK 0.067 . PKNH_1256100 15 RAGYHKK|KI 0.142 . PKNH_1256100 16 AGYHKKK|IF 0.125 . PKNH_1256100 21 KKIFHVK|GS 0.084 . PKNH_1256100 24 FHVKGSR|QF 0.070 . PKNH_1256100 31 QFYGFAK|CR 0.066 . PKNH_1256100 33 YGFAKCR|KV 0.107 . PKNH_1256100 34 GFAKCRK|VQ 0.078 . PKNH_1256100 41 VQTNAIK|RK 0.064 . PKNH_1256100 42 QTNAIKR|KD 0.158 . PKNH_1256100 43 TNAIKRK|DR 0.139 . PKNH_1256100 45 AIKRKDR|IK 0.353 . PKNH_1256100 47 KRKDRIK|RG 0.060 . PKNH_1256100 48 RKDRIKR|GK 0.645 *ProP* PKNH_1256100 50 DRIKRGK|FL 0.088 . PKNH_1256100 55 GKFLQFK|EK 0.060 . PKNH_1256100 57 FLQFKEK|LQ 0.067 . PKNH_1256100 81 YHVYLLR|SN 0.095 . PKNH_1256100 86 LRSNDSR|PA 0.137 . PKNH_1256100 100 NTGEDVR|ND 0.078 . PKNH_1256100 104 DVRNDAK|CK 0.071 . PKNH_1256100 106 RNDAKCK|DQ 0.092 . PKNH_1256100 113 DQHSGGK|GG 0.063 . PKNH_1256100 125 TMMEYIK|WM 0.059 . PKNH_1256100 136 FSSAQGK|DN 0.085 . PKNH_1256100 142 KDNQELK|QQ 0.068 . PKNH_1256100 150 QDNECTR|KN 0.088 . PKNH_1256100 151 DNECTRK|ND 0.091 . PKNH_1256100 156 RKNDGHK|MK 0.078 . PKNH_1256100 158 NDGHKMK|NQ 0.073 . PKNH_1256100 161 HKMKNQK|DS 0.098 . PKNH_1256100 165 NQKDSHK|KD 0.061 . PKNH_1256100 166 QKDSHKK|DH 0.107 . PKNH_1256100 173 DHLLNNR|GD 0.074 . PKNH_1256100 177 NNRGDIK|IC 0.072 . PKNH_1256100 190 EDPYEIK|IN 0.058 . PKNH_1256100 193 YEIKINR|FK 0.098 . PKNH_1256100 195 IKINRFK|RS 0.081 . PKNH_1256100 196 KINRFKR|SS 0.896 *ProP* PKNH_1256100 200 FKRSSGK|EE 0.070 . PKNH_1256100 208 ESSQTGK|GE 0.077 . PKNH_1256100 211 QTGKGEK|YG 0.062 . PKNH_1256100 222 FYFGNQR|DQ 0.087 . PKNH_1256100 230 QPPSHDR|SS 0.126 . PKNH_1256100 235 DRSSSGR|SP 0.138 . PKNH_1256100 245 NNSIPQR|SS 0.285 . PKNH_1256100 253 SIGGEEK|NM 0.059 . PKNH_1256100 256 GEEKNMK|NL 0.065 . PKNH_1256100 265 FVSNVYR|ND 0.086 . PKNH_1256100 287 VVFLCWR|LS 0.080 . PKNH_1256100 295 SEIAGNK|KF 0.057 . PKNH_1256100 296 EIAGNKK|FF 0.100 . PKNH_1256100 303 FFHFMCR|NF 0.085 . PKNH_1256100 313 CSYENIR|RK 0.069 . PKNH_1256100 314 SYENIRR|KY 0.120 . PKNH_1256100 315 YENIRRK|YY 0.114 . PKNH_1256100 353 LLSPEIK|EN 0.068 . PKNH_1256100 356 PEIKENK|TN 0.059 . PKNH_1256100 366 YFFFNYK|SS 0.067 . PKNH_1256100 372 KSSVLEK|KM 0.077 . PKNH_1256100 373 SSVLEKK|MT 0.144 . PKNH_1256100 377 EKKMTDK|DI 0.085 . PKNH_1256100 381 TDKDIMK|IY 0.058 . PKNH_1256100 399 PYILLHR|SN 0.087 . PKNH_1256100 421 YILSTVK|PN 0.057 . PKNH_1256100 436 FPLPYLK|MT 0.067 . PKNH_1256100 457 FIFLFYR|RN 0.077 . PKNH_1256100 458 IFLFYRR|NH 0.096 . PKNH_1256100 483 LYNVYQR|RI 0.080 . PKNH_1256100 484 YNVYQRR|IN 0.150 . PKNH_1256100 489 RRINSNK|NY 0.074 . PKNH_1256100 500 FIELSVK|NG 0.058 . PKNH_1256100 518 DFVDFLK|CL 0.060 . PKNH_1256100 525 CLQLQIR|IF 0.082 . PKNH_1256100 533 FFSLDPR|AI 0.089 . PKNH_1256100 540 AIQSMNR|KI 0.089 . PKNH_1256100 541 IQSMNRK|IV 0.179 . PKNH_1256100 546 RKIVSIK|NM 0.070 . PKNH_1256100 552 KNMQSQR|RI 0.085 . PKNH_1256100 553 NMQSQRR|IK 0.162 . PKNH_1256100 555 QSQRRIK|YH 0.136 . PKNH_1256100 558 RRIKYHK|LK 0.071 . PKNH_1256100 560 IKYHKLK|VK 0.068 . PKNH_1256100 562 YHKLKVK|NL 0.072 . PKNH_1256100 569 NLEAMSK|-- 0.066 . ____________________________^_________________

  • Fasta :-

    >PKNH_1256100 ATGTTCAATGCTGGGAGATACTTCAGAGCAGGCTACCACAAGAAGAAGATCTTTCATGTA AAGGGGAGCAGACAATTTTATGGATTCGCCAAATGTAGGAAGGTGCAGACGAATGCCATC AAAAGAAAAGATAGAATAAAAAGGGGGAAGTTTTTACAATTCAAGGAAAAGCTGCAACTC ATCATTTTCAGTTCCGTGTACTTTTTTGCGTGCGACTATGTTTACCACGTGTATTTGCTC AGAAGCAACGACAGTAGACCCGCAAACCATGCCTCCAACAACACCGGCGAAGACGTGAGG AATGATGCAAAATGCAAAGACCAACATAGCGGTGGGAAGGGGGGGGTTGGCACAACCATG ATGGAGTATATAAAATGGATGAACATATTTTCCAGTGCACAGGGTAAGGATAACCAAGAA TTAAAGCAACAGGACAATGAATGTACTAGAAAAAATGACGGCCACAAAATGAAGAATCAA AAAGATTCCCATAAAAAGGACCATCTCTTGAACAACAGGGGTGATATAAAAATTTGCAGC GTATGTGAGGAAGACCCATACGAAATAAAGATAAATCGCTTTAAACGAAGCAGTGGGAAG GAGGAAAGTAGTCAAACGGGGAAAGGTGAGAAATATGGCGAATCATTCTATTTCGGAAAT CAGAGAGATCAACCTCCTAGCCACGATCGGAGTAGCAGTGGACGGAGCCCCCCTAACAAT AGTATCCCCCAGCGAAGCAGCATAGGGGGGGAGGAAAAAAACATGAAAAATTTATTTGTA AGTAACGTATATAGGAATGATCTTTTCAACGGGTGCAACTTATTTCTGTTCGCCAACGGG GTTGTATTCCTATGTTGGCGTCTAAGTGAAATCGCAGGAAATAAAAAATTTTTTCATTTC ATGTGCAGGAACTTTATCTGCTCATATGAAAATATTAGAAGAAAATATTACCACACGTTT TTTACAGCCGCCATTAGCCACATCACTCTTCCTCATTTTTTATTTAACATGTGGGCATTT CATACCATAAGTAACACCTTACTGAGTCCAGAAATTAAAGAAAACAAAACAAATTATTAT TTTTTCTTTAATTATAAATCCAGCGTTTTGGAAAAAAAAATGACTGACAAGGATATCATG AAAATATATGCCTTATCTTCGATCGTTTCCACTGTCCCATATATTCTTTTACATAGAAGC AATCAATTGTTAGGAGCATCTGGAGCTGTCATGGGTCTTGTGTACATTTTATCCACAGTT AAACCAAATGAAATCTTCGTCTCTTTATTCCCTCTACCATACTTAAAGATGACTTCCTTA CAGTTATGCCATCTGTCCATTTTAACCAATTTTATATTTCTGTTTTATAGAAGAAATCAC TTCAACGTTGCGTGGTTAGCACATTTATTCGGTTTAATGGGAGGGGCCTTGTATAATGTT TACCAGAGAAGAATAAACAGTAATAAGAATTACTACCCTTTTATTGAATTGTCCGTAAAA AATGGATCTATTGATTATCTGAACTCTTACTTAGACTTTGTAGATTTTCTCAAATGTCTG CAGCTCCAAATTAGGATTTTCTTTTCCCTCGACCCACGCGCCATTCAAAGCATGAACAGG AAAATCGTCTCCATTAAAAATATGCAGTCGCAAAGGCGCATCAAGTACCATAAGTTGAAG GTTAAAAATTTGGAGGCCATGTCCAAGTGA
  • Download Fasta

  • Fasta :-

    MFNAGRYFRAGYHKKKIFHVKGSRQFYGFAKCRKVQTNAIKRKDRIKRGKFLQFKEKLQL IIFSSVYFFACDYVYHVYLLRSNDSRPANHASNNTGEDVRNDAKCKDQHSGGKGGVGTTM MEYIKWMNIFSSAQGKDNQELKQQDNECTRKNDGHKMKNQKDSHKKDHLLNNRGDIKICS VCEEDPYEIKINRFKRSSGKEESSQTGKGEKYGESFYFGNQRDQPPSHDRSSSGRSPPNN SIPQRSSIGGEEKNMKNLFVSNVYRNDLFNGCNLFLFANGVVFLCWRLSEIAGNKKFFHF MCRNFICSYENIRRKYYHTFFTAAISHITLPHFLFNMWAFHTISNTLLSPEIKENKTNYY FFFNYKSSVLEKKMTDKDIMKIYALSSIVSTVPYILLHRSNQLLGASGAVMGLVYILSTV KPNEIFVSLFPLPYLKMTSLQLCHLSILTNFIFLFYRRNHFNVAWLAHLFGLMGGALYNV YQRRINSNKNYYPFIELSVKNGSIDYLNSYLDFVDFLKCLQLQIRIFFSLDPRAIQSMNR KIVSIKNMQSQRRIKYHKLKVKNLEAMSK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_1256100232 SHDRSSSGRS0.997unspPKNH_1256100232 SHDRSSSGRS0.997unspPKNH_1256100232 SHDRSSSGRS0.997unspPKNH_1256100233 SDRSSSGRSP0.993unspPKNH_1256100236 SSSGRSPPNN0.992unspPKNH_1256100247 SPQRSSIGGE0.993unspPKNH_1256100163 SNQKDSHKKD0.995unspPKNH_1256100198 SFKRSSGKEE0.998unsp

PK13_4470c      PKH_120920      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India