PKNH_1417700 | U4/U6.U5 tri-snRNP-associated protein 2, putative

UniProt_ID: B3LBY5

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0036459 GO:0008270
Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity zinc ion binding
Computed_GO_Process_IDs: GO:0016579
Computed_GO_Processes: protein deubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes: mRNA splicing, via spliceosome spliceosomal complex assembly

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PKNH_1417700	OTHER	0.999996	0.000001	0.000003

No Results

Fasta :-
>PKNH_1417700 MEKKGRKKNPDDKVHSGNKRGRKKKESLSEEVEKMDGNDEAKETDQAGEANQTIPTEATN VTSLTDERRLIPRGAGRGRGRVCPYLRTINRNLLDFDFEKLCSISMSNLHVYACLVCGVY FQGIGKGTHAYTHALEKNHYVFINLETCKTCCLPENYEIEDASLNDIKYFLKPTYSRDQV EYICRNSILGKSLDGADFFPGFVGLNNLKHTDYCNVIIQLVCSIIPLRNFFLVFENKKYV SKNIVSSLSELIKKIFNPRNFKGVVSPHEFLQTVGIESKKTFKIGSKNDPLDFFLWLISK IHRYQERALRKGTKSMMGKKRKISKSGEKDKRADGQSGEQNKRQEEDEEDEEVDDEEGKI QPGHHLSQLNAMLSSSSESYMSEEAVPGIDLPTKRKKKKKKKKWKYDKVNIIDYCFDGEL IIKTKKKKKKKSSEGDENMSSTHNTKKREKNDTYHERNAREDGKFSNHLNNEGGVENDMS NSDEDDTDLQDGEELNEEKNYVTEKIPFRTLSLKLPNPPIFKSTTESNIIPQVSIFELLT KFDGETESFLNEKSEPSTLILSKLPKYLVFTIKRFSKNNFFVEKNGTIVNFVIKNLDMKD YIHEDYLEKNPVTKYNLIANIFHSGSVNNGTYKIHVLNQASNEWYEMEDLHVITVLPQLV LLPESCVQLYQRQDVQLNGEVP
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1417700.fa Sequence name : PKNH_1417700 Sequence length : 682 VALUES OF COMPUTED PARAMETERS Coef20 : 2.812 CoefTot : 0.000 ChDiff : 3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.235 1.882 0.305 0.589 MesoH : -0.635 0.415 -0.353 0.214 MuHd_075 : 34.581 14.144 9.343 5.525 MuHd_095 : 16.243 5.408 5.206 2.562 MuHd_100 : 6.940 0.452 2.962 1.081 MuHd_105 : 6.307 6.253 1.348 2.288 Hmax_075 : -1.167 -3.033 -4.213 1.353 Hmax_095 : -21.875 -11.900 -8.218 -2.187 Hmax_100 : -20.800 -12.600 -9.299 -2.640 Hmax_105 : -24.600 -9.100 -9.266 -2.460 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9933 0.0067 DFMC : 0.9868 0.0132

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 682 PKNH_1417700 MEKKGRKKNPDDKVHSGNKRGRKKKESLSEEVEKMDGNDEAKETDQAGEANQTIPTEATNVTSLTDERRLIPRGAGRGRG 80 RVCPYLRTINRNLLDFDFEKLCSISMSNLHVYACLVCGVYFQGIGKGTHAYTHALEKNHYVFINLETCKTCCLPENYEIE 160 DASLNDIKYFLKPTYSRDQVEYICRNSILGKSLDGADFFPGFVGLNNLKHTDYCNVIIQLVCSIIPLRNFFLVFENKKYV 240 SKNIVSSLSELIKKIFNPRNFKGVVSPHEFLQTVGIESKKTFKIGSKNDPLDFFLWLISKIHRYQERALRKGTKSMMGKK 320 RKISKSGEKDKRADGQSGEQNKRQEEDEEDEEVDDEEGKIQPGHHLSQLNAMLSSSSESYMSEEAVPGIDLPTKRKKKKK 400 KKKWKYDKVNIIDYCFDGELIIKTKKKKKKKSSEGDENMSSTHNTKKREKNDTYHERNAREDGKFSNHLNNEGGVENDMS 480 NSDEDDTDLQDGEELNEEKNYVTEKIPFRTLSLKLPNPPIFKSTTESNIIPQVSIFELLTKFDGETESFLNEKSEPSTLI 560 LSKLPKYLVFTIKRFSKNNFFVEKNGTIVNFVIKNLDMKDYIHEDYLEKNPVTKYNLIANIFHSGSVNNGTYKIHVLNQA 640 SNEWYEMEDLHVITVLPQLVLLPESCVQLYQRQDVQLNGEVP 720 ........................P....................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .......................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PKNH_1417700 3 ----MEK|KG 0.060 . PKNH_1417700 4 ---MEKK|GR 0.102 . PKNH_1417700 6 -MEKKGR|KK 0.088 . PKNH_1417700 7 MEKKGRK|KN 0.073 . PKNH_1417700 8 EKKGRKK|NP 0.126 . PKNH_1417700 13 KKNPDDK|VH 0.066 . PKNH_1417700 19 KVHSGNK|RG 0.057 . PKNH_1417700 20 VHSGNKR|GR 0.256 . PKNH_1417700 22 SGNKRGR|KK 0.128 . PKNH_1417700 23 GNKRGRK|KK 0.190 . PKNH_1417700 24 NKRGRKK|KE 0.121 . PKNH_1417700 25 KRGRKKK|ES 0.526 *ProP* PKNH_1417700 34 LSEEVEK|MD 0.076 . PKNH_1417700 42 DGNDEAK|ET 0.087 . PKNH_1417700 68 TSLTDER|RL 0.079 . PKNH_1417700 69 SLTDERR|LI 0.119 . PKNH_1417700 73 ERRLIPR|GA 0.227 . PKNH_1417700 77 IPRGAGR|GR 0.122 . PKNH_1417700 79 RGAGRGR|GR 0.074 . PKNH_1417700 81 AGRGRGR|VC 0.077 . PKNH_1417700 87 RVCPYLR|TI 0.092 . PKNH_1417700 91 YLRTINR|NL 0.081 . PKNH_1417700 100 LDFDFEK|LC 0.067 . PKNH_1417700 126 YFQGIGK|GT 0.073 . PKNH_1417700 137 YTHALEK|NH 0.060 . PKNH_1417700 149 INLETCK|TC 0.058 . PKNH_1417700 168 ASLNDIK|YF 0.059 . PKNH_1417700 172 DIKYFLK|PT 0.061 . PKNH_1417700 177 LKPTYSR|DQ 0.084 . PKNH_1417700 185 QVEYICR|NS 0.071 . PKNH_1417700 191 RNSILGK|SL 0.146 . PKNH_1417700 209 VGLNNLK|HT 0.060 . PKNH_1417700 228 CSIIPLR|NF 0.080 . PKNH_1417700 237 FLVFENK|KY 0.057 . PKNH_1417700 238 LVFENKK|YV 0.163 . PKNH_1417700 242 NKKYVSK|NI 0.069 . PKNH_1417700 253 SLSELIK|KI 0.070 . PKNH_1417700 254 LSELIKK|IF 0.083 . PKNH_1417700 259 KKIFNPR|NF 0.092 . PKNH_1417700 262 FNPRNFK|GV 0.122 . PKNH_1417700 279 TVGIESK|KT 0.069 . PKNH_1417700 280 VGIESKK|TF 0.084 . PKNH_1417700 283 ESKKTFK|IG 0.065 . PKNH_1417700 287 TFKIGSK|ND 0.054 . PKNH_1417700 300 FLWLISK|IH 0.059 . PKNH_1417700 303 LISKIHR|YQ 0.128 . PKNH_1417700 307 IHRYQER|AL 0.153 . PKNH_1417700 310 YQERALR|KG 0.183 . PKNH_1417700 311 QERALRK|GT 0.095 . PKNH_1417700 314 ALRKGTK|SM 0.086 . PKNH_1417700 319 TKSMMGK|KR 0.073 . PKNH_1417700 320 KSMMGKK|RK 0.082 . PKNH_1417700 321 SMMGKKR|KI 0.412 . PKNH_1417700 322 MMGKKRK|IS 0.135 . PKNH_1417700 325 KKRKISK|SG 0.094 . PKNH_1417700 329 ISKSGEK|DK 0.071 . PKNH_1417700 331 KSGEKDK|RA 0.084 . PKNH_1417700 332 SGEKDKR|AD 0.311 . PKNH_1417700 342 QSGEQNK|RQ 0.071 . PKNH_1417700 343 SGEQNKR|QE 0.229 . PKNH_1417700 359 VDDEEGK|IQ 0.056 . PKNH_1417700 394 GIDLPTK|RK 0.058 . PKNH_1417700 395 IDLPTKR|KK 0.147 . PKNH_1417700 396 DLPTKRK|KK 0.077 . PKNH_1417700 397 LPTKRKK|KK 0.104 . PKNH_1417700 398 PTKRKKK|KK 0.311 . PKNH_1417700 399 TKRKKKK|KK 0.149 . PKNH_1417700 400 KRKKKKK|KK 0.167 . PKNH_1417700 401 RKKKKKK|KK 0.162 . PKNH_1417700 402 KKKKKKK|KW 0.116 . PKNH_1417700 403 KKKKKKK|WK 0.192 . PKNH_1417700 405 KKKKKWK|YD 0.082 . PKNH_1417700 408 KKWKYDK|VN 0.059 . PKNH_1417700 423 DGELIIK|TK 0.055 . PKNH_1417700 425 ELIIKTK|KK 0.065 . PKNH_1417700 426 LIIKTKK|KK 0.083 . PKNH_1417700 427 IIKTKKK|KK 0.110 . PKNH_1417700 428 IKTKKKK|KK 0.125 . PKNH_1417700 429 KTKKKKK|KK 0.133 . PKNH_1417700 430 TKKKKKK|KS 0.224 . PKNH_1417700 431 KKKKKKK|SS 0.369 . PKNH_1417700 446 SSTHNTK|KR 0.064 . PKNH_1417700 447 STHNTKK|RE 0.086 . PKNH_1417700 448 THNTKKR|EK 0.308 . PKNH_1417700 450 NTKKREK|ND 0.064 . PKNH_1417700 457 NDTYHER|NA 0.106 . PKNH_1417700 460 YHERNAR|ED 0.272 . PKNH_1417700 464 NAREDGK|FS 0.071 . PKNH_1417700 499 EELNEEK|NY 0.054 . PKNH_1417700 505 KNYVTEK|IP 0.065 . PKNH_1417700 509 TEKIPFR|TL 0.111 . PKNH_1417700 514 FRTLSLK|LP 0.059 . PKNH_1417700 522 PNPPIFK|ST 0.076 . PKNH_1417700 541 IFELLTK|FD 0.071 . PKNH_1417700 553 ESFLNEK|SE 0.066 . PKNH_1417700 563 STLILSK|LP 0.057 . PKNH_1417700 566 ILSKLPK|YL 0.074 . PKNH_1417700 573 YLVFTIK|RF 0.067 . PKNH_1417700 574 LVFTIKR|FS 0.172 . PKNH_1417700 577 TIKRFSK|NN 0.163 . PKNH_1417700 584 NNFFVEK|NG 0.066 . PKNH_1417700 594 IVNFVIK|NL 0.070 . PKNH_1417700 599 IKNLDMK|DY 0.078 . PKNH_1417700 609 HEDYLEK|NP 0.054 . PKNH_1417700 614 EKNPVTK|YN 0.073 . PKNH_1417700 633 VNNGTYK|IH 0.060 . PKNH_1417700 672 CVQLYQR|QD 0.079 . ____________________________^_________________

Fasta :-
>PKNH_1417700 ATGGAAAAGAAAGGGAGAAAGAAGAACCCAGATGACAAGGTTCATTCTGGTAACAAACGG GGGAGGAAGAAAAAGGAGAGTTTATCGGAGGAGGTGGAAAAAATGGACGGGAACGATGAG GCGAAGGAGACAGATCAAGCTGGAGAGGCCAATCAGACAATCCCGACAGAGGCCACCAAT GTAACCTCTTTAACGGACGAACGACGCCTTATCCCGAGGGGCGCGGGCAGAGGGAGGGGC AGGGTTTGCCCATATCTGCGTACCATCAACAGAAACTTATTGGACTTTGATTTCGAAAAG TTGTGCAGCATCAGCATGTCCAACCTTCACGTATACGCATGCCTAGTTTGTGGGGTTTAC TTCCAAGGAATAGGAAAAGGAACACACGCATACACACATGCACTGGAAAAAAACCATTAC GTCTTCATCAATTTGGAAACATGCAAAACTTGTTGCCTTCCAGAAAATTACGAAATAGAA GATGCATCTCTAAATGATATAAAATATTTTCTAAAACCCACGTATAGTAGAGATCAAGTA GAATACATTTGTCGTAATTCTATTTTGGGAAAATCGCTAGACGGAGCAGATTTCTTTCCT GGATTTGTAGGACTCAATAATTTAAAACATACTGACTACTGCAATGTTATTATTCAGCTT GTGTGTAGTATTATTCCATTAAGGAACTTTTTTTTAGTATTCGAAAATAAGAAATATGTC AGCAAAAATATCGTTTCCTCTTTATCAGAATTGATTAAAAAAATTTTTAACCCTCGAAAT TTCAAGGGCGTTGTTTCTCCACATGAGTTCCTACAAACAGTGGGTATTGAATCCAAGAAA ACCTTCAAAATTGGATCTAAAAATGATCCGCTAGATTTTTTCCTCTGGCTAATTAGTAAA ATACATAGGTATCAAGAGAGGGCGCTGCGGAAGGGTACTAAAAGTATGATGGGGAAGAAG AGGAAAATTAGTAAAAGTGGAGAAAAGGATAAAAGGGCGGATGGTCAATCGGGCGAACAA AATAAAAGACAGGAAGAGGATGAAGAAGATGAAGAGGTGGACGATGAAGAAGGCAAAATT CAACCTGGACACCACCTCTCGCAGTTGAATGCTATGTTGTCTTCCTCCAGCGAGTCATAC ATGTCGGAAGAAGCTGTCCCTGGTATAGATTTACCAACGAAAAGGAAAAAGAAAAAAAAA AAAAAAAAATGGAAGTACGACAAGGTAAACATTATCGACTATTGCTTTGATGGGGAATTA ATTATCAAAACGAAAAAAAAAAAAAAAAAAAAAAGTTCCGAAGGAGATGAAAATATGAGC AGTACGCATAATACAAAAAAGAGAGAAAAGAATGATACGTACCATGAACGGAATGCACGT GAAGATGGCAAATTTTCTAACCACTTGAATAATGAAGGAGGAGTGGAGAATGACATGAGC AATTCGGACGAGGATGATACAGACTTGCAGGATGGAGAAGAATTGAACGAAGAAAAAAAT TACGTAACAGAAAAAATTCCATTTCGAACACTTTCCTTGAAGTTGCCCAACCCACCCATT TTTAAAAGCACAACAGAAAGTAACATCATACCACAGGTATCCATTTTCGAGCTCTTGACA AAATTTGATGGAGAAACGGAATCCTTTTTAAATGAGAAATCGGAGCCAAGCACTTTAATC CTTTCCAAGTTACCTAAATATTTAGTGTTTACCATTAAGAGGTTTTCTAAAAATAATTTT TTTGTCGAAAAAAATGGCACCATTGTTAATTTTGTCATAAAAAACTTAGACATGAAGGAT TATATACATGAAGATTATCTGGAGAAAAATCCTGTGACCAAGTATAACTTAATTGCTAAT ATTTTTCACAGTGGCTCCGTTAACAATGGCACCTACAAAATCCATGTCCTCAACCAGGCG TCCAATGAGTGGTATGAAATGGAGGATCTGCACGTGATTACCGTTTTGCCGCAGCTAGTT CTCCTACCCGAGTCTTGTGTGCAGTTGTATCAGCGCCAAGATGTGCAACTCAACGGGGAG GTCCCCTAA
Download Fasta

Fasta :-

MEKKGRKKNPDDKVHSGNKRGRKKKESLSEEVEKMDGNDEAKETDQAGEANQTIPTEATN VTSLTDERRLIPRGAGRGRGRVCPYLRTINRNLLDFDFEKLCSISMSNLHVYACLVCGVY FQGIGKGTHAYTHALEKNHYVFINLETCKTCCLPENYEIEDASLNDIKYFLKPTYSRDQV EYICRNSILGKSLDGADFFPGFVGLNNLKHTDYCNVIIQLVCSIIPLRNFFLVFENKKYV SKNIVSSLSELIKKIFNPRNFKGVVSPHEFLQTVGIESKKTFKIGSKNDPLDFFLWLISK IHRYQERALRKGTKSMMGKKRKISKSGEKDKRADGQSGEQNKRQEEDEEDEEVDDEEGKI QPGHHLSQLNAMLSSSSESYMSEEAVPGIDLPTKRKKKKKKKKWKYDKVNIIDYCFDGEL IIKTKKKKKKKSSEGDENMSSTHNTKKREKNDTYHERNAREDGKFSNHLNNEGGVENDMS NSDEDDTDLQDGEELNEEKNYVTEKIPFRTLSLKLPNPPIFKSTTESNIIPQVSIFELLT KFDGETESFLNEKSEPSTLILSKLPKYLVFTIKRFSKNNFFVEKNGTIVNFVIKNLDMKD YIHEDYLEKNPVTKYNLIANIFHSGSVNNGTYKIHVLNQASNEWYEMEDLHVITVLPQLV LLPESCVQLYQRQDVQLNGEVP

Zf-UBP

title: Active Site
coordinates: N207,D212,T631,D649

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	PKNH_1417700	266 S	KGVVSPHEF	0.992	unsp	PKNH_1417700	266 S	KGVVSPHEF	0.992	unsp	PKNH_1417700	266 S	KGVVSPHEF	0.992	unsp	PKNH_1417700	324 S	KRKISKSGE	0.996	unsp	PKNH_1417700	326 S	KISKSGEKD	0.996	unsp	PKNH_1417700	379 S	SSSESYMSE	0.992	unsp	PKNH_1417700	382 S	ESYMSEEAV	0.99	unsp	PKNH_1417700	432 S	KKKKSSEGD	0.997	unsp	PKNH_1417700	433 S	KKKSSEGDE	0.997	unsp	PKNH_1417700	482 S	DMSNSDEDD	0.993	unsp	PKNH_1417700	576 S	IKRFSKNNF	0.994	unsp	PKNH_1417700	27 S	KKKESLSEE	0.997	unsp	PKNH_1417700	29 S	KESLSEEVE	0.995	unsp

PKNH_1417700 | U4/U6.U5 tri-snRNP-associated protein 2, putative

ID's

UniProt_ID: B3LBY5

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0036459 GO:0008270

Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity zinc ion binding

Computed_GO_Process_IDs: GO:0016579

Computed_GO_Processes: protein deubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes: mRNA splicing, via spliceosome spliceosomal complex assembly

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Zf-UBP

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

PK13_1650w PKH_141620

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India