PKNH_1449800 | ATP-dependent protease subunit ClpQ, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1449800mTP0.1153240.0006280.884048CS pos: 25-26. RNY-FA. Pr: 0.2344
No Results

  • Fasta :-

    >PKNH_1449800 MFLRHLSGFIRVPPAISRTAQVRNYFAPTGRLLPPRHGTTILCVRKNNEVCLIGDGMVSQ GTMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWR TDRYLRHLEAVLIVADKDVLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDVENLS AKDIAYKAMNIAADMCCHTNNNFICETL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1449800.fa Sequence name : PKNH_1449800 Sequence length : 208 VALUES OF COMPUTED PARAMETERS Coef20 : 4.580 CoefTot : -1.118 ChDiff : 4 ZoneTo : 48 KR : 8 DE : 0 CleavSite : 41 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.147 1.300 0.135 0.534 MesoH : -0.738 0.352 -0.357 0.228 MuHd_075 : 45.045 21.509 11.666 8.847 MuHd_095 : 31.195 15.845 6.628 7.299 MuHd_100 : 43.979 23.271 8.935 10.881 MuHd_105 : 49.910 29.490 11.872 12.297 Hmax_075 : 11.200 13.300 3.124 4.282 Hmax_095 : 12.338 9.900 1.314 4.445 Hmax_100 : 16.800 15.000 2.689 6.240 Hmax_105 : 16.450 18.433 3.276 7.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0248 0.9752 DFMC : 0.0186 0.9814 This protein is probably imported in mitochondria. f(Ser) = 0.0417 f(Arg) = 0.1458 CMi = 0.15198 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 208 PKNH_1449800 MFLRHLSGFIRVPPAISRTAQVRNYFAPTGRLLPPRHGTTILCVRKNNEVCLIGDGMVSQGTMIVKGNAKKIRRLKDNIL 80 MGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRTDRYLRHLEAVLIVADKDVLLEVTGNGDVLEPSGNVLGTG 160 SGGPYAIAAARALYDVENLSAKDIAYKAMNIAADMCCHTNNNFICETL 240 ................................................................................ 80 ................................................................................ 160 ................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1449800 4 ---MFLR|HL 0.109 . PKNH_1449800 11 HLSGFIR|VP 0.091 . PKNH_1449800 18 VPPAISR|TA 0.076 . PKNH_1449800 23 SRTAQVR|NY 0.102 . PKNH_1449800 31 YFAPTGR|LL 0.080 . PKNH_1449800 36 GRLLPPR|HG 0.113 . PKNH_1449800 45 TTILCVR|KN 0.077 . PKNH_1449800 46 TILCVRK|NN 0.087 . PKNH_1449800 66 QGTMIVK|GN 0.066 . PKNH_1449800 70 IVKGNAK|KI 0.065 . PKNH_1449800 71 VKGNAKK|IR 0.080 . PKNH_1449800 73 GNAKKIR|RL 0.152 . PKNH_1449800 74 NAKKIRR|LK 0.171 . PKNH_1449800 76 KKIRRLK|DN 0.167 . PKNH_1449800 96 CFTLLDK|FE 0.058 . PKNH_1449800 100 LDKFETK|ID 0.060 . PKNH_1449800 110 YPNQLLR|SC 0.099 . PKNH_1449800 117 SCVELAK|LW 0.062 . PKNH_1449800 120 ELAKLWR|TD 0.085 . PKNH_1449800 123 KLWRTDR|YL 0.320 . PKNH_1449800 126 RTDRYLR|HL 0.285 . PKNH_1449800 137 VLIVADK|DV 0.076 . PKNH_1449800 171 YAIAAAR|AL 0.129 . PKNH_1449800 182 VENLSAK|DI 0.083 . PKNH_1449800 187 AKDIAYK|AM 0.067 . ____________________________^_________________

  • Fasta :-

    >PKNH_1449800 ATGTTTCTAAGGCACCTCTCAGGCTTTATTAGGGTCCCCCCAGCGATTAGCCGAACGGCA CAGGTGAGAAACTACTTCGCCCCCACGGGAAGGCTCCTCCCGCCGCGACATGGCACGACC ATACTGTGCGTCCGCAAGAACAACGAAGTGTGTCTAATTGGAGATGGCATGGTTTCTCAA GGAACAATGATCGTCAAAGGGAACGCCAAAAAAATAAGAAGGCTAAAGGACAACATTTTG ATGGGGTTCGCAGGGGCCACGGCGGACTGCTTCACCCTGTTGGACAAGTTCGAAACGAAA ATCGACGAATACCCAAATCAGCTTCTCCGCAGTTGCGTCGAACTAGCCAAGTTGTGGAGA ACCGACAGGTACCTGCGACACCTGGAGGCAGTTCTAATAGTGGCAGACAAAGACGTGCTC TTGGAGGTAACTGGTAACGGAGACGTTTTGGAACCTTCTGGAAATGTCCTGGGAACAGGG TCGGGGGGGCCATATGCCATAGCAGCAGCCAGGGCACTCTATGACGTGGAGAATCTCAGC GCCAAGGACATCGCCTACAAAGCAATGAATATTGCTGCAGACATGTGTTGCCATACGAAC AACAATTTTATATGTGAAACGCTTTAA
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  • Fasta :-

    MFLRHLSGFIRVPPAISRTAQVRNYFAPTGRLLPPRHGTTILCVRKNNEVCLIGDGMVSQ GTMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWR TDRYLRHLEAVLIVADKDVLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDVENLS AKDIAYKAMNIAADMCCHTNNNFICETL

  • title: active site
  • coordinates: T39,D55,M57,K71,S161
No Results
No Results
IDSitePeptideScoreMethod
PKNH_1449800180 SVENLSAKDI0.996unsp

PK12_2890c      PKH_144730      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India