PVX_079880 | ubiquitin carboxyl-terminal hydrolase, putative

UniProt_ID: A5K985

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0004197 GO:0004221 GO:0005515 GO:0036459
Computed_GO_Functions: cysteine-type endopeptidase activity obsolete ubiquitin thiolesterase activity protein binding thiol-dependent ubiquitinyl hydrolase activity
Computed_GO_Process_IDs: GO:0016579 GO:0006511
Computed_GO_Processes: protein deubiquitination ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PVX_079880	OTHER	0.999889	0.000050	0.000062

No Results

Fasta :-
>PVX_079880 MTIVNVTVKWKSHVYSDLQLDTSQTILAFKEMLWTLTNVPPEKQKLMYKGLIKDDTDLSS LNIKHNDKIMLVGSAESLIESPPPVVFVEDLSKEDKERLHAKENILFEDQGIVNLGNTCY FNAVLQFLTSFDDLGAFLCSIGRKEKHLLKSTNDILFDSYIHFSQTFGKSPEPYVPLELL KSFRDVFPKFRTVNLRTKQFAQQDAEECMNAILTSLNDQTDCKISDKLFSFKVISKVRCI EDDASGGGKPTKEKPSSDNAPSENPPSETANEIETTEEFHNKLICYMGTHTTPVNHMHEG IRLSLIEKIQKQRSEDSKEDALFEKKSEMNSLPPYLIVHFLRFESKKISETNNAISVVTA KICRKVSFPETFDIYDFCSDELKTQLKVARNIVMKRKEADLNARGGAEAVGGSTAASAQK NEGVNDTSVNESTNESSNDNTNGVTSDEATAVEGTAAEATAAEATATEEAHGEGSSPTED LTEIPMGEYELISIITHKGRNEESGHYIAWKKMRSSIGADSNTYKEQLASKKKKGNDSMW YKMDDDKVSTHKFSSLDLCGGCSDFNIAILLLYKRKTLLCTQEELDSHGK
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_079880.fa Sequence name : PVX_079880 Sequence length : 590 VALUES OF COMPUTED PARAMETERS Coef20 : 4.078 CoefTot : -0.532 ChDiff : -21 ZoneTo : 16 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.900 1.500 0.175 0.524 MesoH : -0.743 0.174 -0.449 0.188 MuHd_075 : 1.269 10.863 1.938 2.574 MuHd_095 : 17.876 16.376 7.093 4.832 MuHd_100 : 14.493 17.108 5.687 4.818 MuHd_105 : 7.637 13.213 3.025 3.649 Hmax_075 : 5.833 13.800 -1.015 3.900 Hmax_095 : 5.775 10.800 -0.269 3.946 Hmax_100 : 5.400 11.600 -0.225 4.560 Hmax_105 : 6.400 13.700 -0.157 4.037 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9661 0.0339 DFMC : 0.9811 0.0189

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 590 PVX_079880 MTIVNVTVKWKSHVYSDLQLDTSQTILAFKEMLWTLTNVPPEKQKLMYKGLIKDDTDLSSLNIKHNDKIMLVGSAESLIE 80 SPPPVVFVEDLSKEDKERLHAKENILFEDQGIVNLGNTCYFNAVLQFLTSFDDLGAFLCSIGRKEKHLLKSTNDILFDSY 160 IHFSQTFGKSPEPYVPLELLKSFRDVFPKFRTVNLRTKQFAQQDAEECMNAILTSLNDQTDCKISDKLFSFKVISKVRCI 240 EDDASGGGKPTKEKPSSDNAPSENPPSETANEIETTEEFHNKLICYMGTHTTPVNHMHEGIRLSLIEKIQKQRSEDSKED 320 ALFEKKSEMNSLPPYLIVHFLRFESKKISETNNAISVVTAKICRKVSFPETFDIYDFCSDELKTQLKVARNIVMKRKEAD 400 LNARGGAEAVGGSTAASAQKNEGVNDTSVNESTNESSNDNTNGVTSDEATAVEGTAAEATAAEATATEEAHGEGSSPTED 480 LTEIPMGEYELISIITHKGRNEESGHYIAWKKMRSSIGADSNTYKEQLASKKKKGNDSMWYKMDDDKVSTHKFSSLDLCG 560 GCSDFNIAILLLYKRKTLLCTQEELDSHGK 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .............................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_079880 9 IVNVTVK|WK 0.075 . PVX_079880 11 NVTVKWK|SH 0.073 . PVX_079880 30 QTILAFK|EM 0.059 . PVX_079880 43 TNVPPEK|QK 0.061 . PVX_079880 45 VPPEKQK|LM 0.066 . PVX_079880 49 KQKLMYK|GL 0.070 . PVX_079880 53 MYKGLIK|DD 0.061 . PVX_079880 64 LSSLNIK|HN 0.082 . PVX_079880 68 NIKHNDK|IM 0.057 . PVX_079880 93 FVEDLSK|ED 0.056 . PVX_079880 96 DLSKEDK|ER 0.063 . PVX_079880 98 SKEDKER|LH 0.089 . PVX_079880 102 KERLHAK|EN 0.083 . PVX_079880 143 FLCSIGR|KE 0.070 . PVX_079880 144 LCSIGRK|EK 0.084 . PVX_079880 146 SIGRKEK|HL 0.171 . PVX_079880 150 KEKHLLK|ST 0.104 . PVX_079880 169 FSQTFGK|SP 0.103 . PVX_079880 181 VPLELLK|SF 0.087 . PVX_079880 184 ELLKSFR|DV 0.237 . PVX_079880 189 FRDVFPK|FR 0.082 . PVX_079880 191 DVFPKFR|TV 0.099 . PVX_079880 196 FRTVNLR|TK 0.089 . PVX_079880 198 TVNLRTK|QF 0.073 . PVX_079880 223 NDQTDCK|IS 0.064 . PVX_079880 227 DCKISDK|LF 0.062 . PVX_079880 232 DKLFSFK|VI 0.077 . PVX_079880 236 SFKVISK|VR 0.059 . PVX_079880 238 KVISKVR|CI 0.107 . PVX_079880 249 DASGGGK|PT 0.069 . PVX_079880 252 GGGKPTK|EK 0.066 . PVX_079880 254 GKPTKEK|PS 0.081 . PVX_079880 282 TEEFHNK|LI 0.085 . PVX_079880 302 HMHEGIR|LS 0.075 . PVX_079880 308 RLSLIEK|IQ 0.060 . PVX_079880 311 LIEKIQK|QR 0.057 . PVX_079880 313 EKIQKQR|SE 0.166 . PVX_079880 318 QRSEDSK|ED 0.070 . PVX_079880 325 EDALFEK|KS 0.062 . PVX_079880 326 DALFEKK|SE 0.107 . PVX_079880 342 LIVHFLR|FE 0.135 . PVX_079880 346 FLRFESK|KI 0.075 . PVX_079880 347 LRFESKK|IS 0.146 . PVX_079880 361 ISVVTAK|IC 0.070 . PVX_079880 364 VTAKICR|KV 0.117 . PVX_079880 365 TAKICRK|VS 0.089 . PVX_079880 383 FCSDELK|TQ 0.060 . PVX_079880 387 ELKTQLK|VA 0.067 . PVX_079880 390 TQLKVAR|NI 0.113 . PVX_079880 395 ARNIVMK|RK 0.083 . PVX_079880 396 RNIVMKR|KE 0.140 . PVX_079880 397 NIVMKRK|EA 0.102 . PVX_079880 404 EADLNAR|GG 0.090 . PVX_079880 420 TAASAQK|NE 0.071 . PVX_079880 498 ISIITHK|GR 0.068 . PVX_079880 500 IITHKGR|NE 0.097 . PVX_079880 511 GHYIAWK|KM 0.068 . PVX_079880 512 HYIAWKK|MR 0.118 . PVX_079880 514 IAWKKMR|SS 0.211 . PVX_079880 525 ADSNTYK|EQ 0.067 . PVX_079880 531 KEQLASK|KK 0.060 . PVX_079880 532 EQLASKK|KK 0.091 . PVX_079880 533 QLASKKK|KG 0.104 . PVX_079880 534 LASKKKK|GN 0.206 . PVX_079880 542 NDSMWYK|MD 0.093 . PVX_079880 547 YKMDDDK|VS 0.064 . PVX_079880 552 DKVSTHK|FS 0.070 . PVX_079880 574 AILLLYK|RK 0.051 . PVX_079880 575 ILLLYKR|KT 0.100 . PVX_079880 576 LLLYKRK|TL 0.075 . PVX_079880 590 ELDSHGK|-- 0.063 . ____________________________^_________________

Fasta :-
>PVX_079880 ACCAAAAAATGTCACCCTTTCTTTAATTCTTCCTCGCGATTATGCATCATGGCCCCCTAT TGTTGTTACGCTTTCTCTTCATTTTGCTTCCACTTTTGTACAAAATGATGAAAGAAAAAG GAGGAAAAATACCCCCTAGCATTTCAATGTTGAAATGAATAACACACTGTACTTTATTTT TTTATTTTTTTTTTTTTTGTTTTTTCAACCCCTATTTTGTTTAACTCCTTGACGATCAAA TGGAAACGCAATCTGAGTACCTTTTAATTGTCAATTGATAAATGGATAAGTACCCGATTA CCATTGTTCAGAAGCTGCGCTTCGGTAGTTTTCCTTTTTTTTTTGCAATCCTCGAGAATA TTTTCTACTTAATTTTATCACCCTCTGCTTTTGTTTTCGTTACATCCCCTTCCGCTTACA TTTTCAAAACTTGGTGAAAACATAAACGGCCTTCCGCCCCCGAGGAAAAATGACAATTGT TAATGTGACGGTAAAATGGAAGAGTCACGTGTACAGCGATCTACAGCTCGACACGTCTCA GACGATCTTGGCATTCAAGGAGATGCTGTGGACCCTCACGAACGTCCCGCCCGAAAAACA AAAACTGATGTATAAAGGCCTCATCAAAGATGACACAGATCTATCCTCGCTAAACATAAA ACATAATGACAAAATTATGCTAGTCGGTTCAGCAGAGAGTTTAATAGAGAGTCCCCCCCC TGTAGTGTTTGTGGAGGATCTCTCCAAAGAAGATAAAGAGAGATTACACGCAAAAGAAAA CATCCTTTTTGAAGACCAGGGAATTGTGAATTTAGGAAACACCTGCTACTTCAACGCAGT GTTGCAATTTTTAACCTCCTTTGACGATTTAGGGGCTTTCCTTTGCAGCATAGGAAGAAA GGAAAAACATTTATTGAAATCTACGAATGATATTTTATTCGATTCGTATATTCACTTTTC CCAAACCTTTGGAAAGTCTCCTGAGCCGTATGTCCCTCTGGAATTGTTAAAATCCTTTAG GGATGTATTCCCCAAATTTAGAACTGTCAATTTAAGGACGAAACAGTTTGCCCAGCAGGA TGCAGAAGAATGTATGAATGCCATTCTCACCTCATTGAATGACCAGACGGATTGTAAAAT TAGCGATAAGTTGTTTTCGTTCAAGGTGATCAGCAAGGTTAGGTGCATAGAGGACGACGC GTCTGGGGGAGGGAAACCAACTAAGGAGAAACCCTCATCGGATAACGCACCAAGTGAAAA CCCACCCAGTGAAACCGCCAACGAAATCGAAACGACAGAAGAGTTTCACAATAAACTGAT TTGCTACATGGGAACGCACACCACCCCTGTGAACCACATGCACGAAGGAATACGACTATC CCTGATTGAGAAAATTCAAAAGCAACGATCTGAGGATAGTAAGGAAGATGCCCTGTTTGA AAAAAAATCTGAAATGAACTCCCTCCCTCCATATCTAATTGTTCACTTTTTACGTTTCGA ATCGAAGAAGATCTCCGAAACGAATAACGCCATTTCTGTCGTTACGGCCAAGATATGCCG GAAGGTGAGTTTTCCAGAGACGTTTGACATTTACGATTTCTGCTCAGATGAATTGAAGAC TCAATTGAAGGTAGCTCGAAATATTGTGATGAAGAGGAAGGAAGCGGACTTGAACGCTCG CGGGGGTGCCGAAGCTGTTGGAGGAAGCACTGCTGCAAGTGCACAGAAAAACGAGGGCGT GAACGATACTAGCGTTAACGAAAGCACCAACGAGAGCTCCAACGATAACACTAACGGTGT GACGAGCGATGAGGCAACGGCTGTGGAGGGAACGGCCGCCGAGGCAACCGCAGCCGAGGC AACAGCTACGGAGGAAGCGCATGGTGAGGGTAGCAGCCCGACGGAGGACTTGACGGAAAT CCCCATGGGGGAATATGAACTCATTTCAATAATCACACACAAGGGGAGAAACGAAGAAAG TGGTCACTACATTGCCTGGAAAAAAATGAGGAGCTCCATAGGCGCAGATAGCAATACGTA CAAGGAACAGCTAGCCAGTAAGAAAAAAAAAGGAAACGATTCCATGTGGTATAAGATGGA TGATGATAAGGTAAGCACGCATAAATTTTCTTCCCTTGATTTATGTGGAGGGTGCAGTGA CTTTAACATAGCTATATTGCTACTGTATAAGCGAAAGACCCTGTTGTGCACACAGGAGGA GTTGGATTCTCATGGGAAATGA
Download Fasta

Fasta :-

MTIVNVTVKWKSHVYSDLQLDTSQTILAFKEMLWTLTNVPPEKQKLMYKGLIKDDTDLSS LNIKHNDKIMLVGSAESLIESPPPVVFVEDLSKEDKERLHAKENILFEDQGIVNLGNTCY FNAVLQFLTSFDDLGAFLCSIGRKEKHLLKSTNDILFDSYIHFSQTFGKSPEPYVPLELL KSFRDVFPKFRTVNLRTKQFAQQDAEECMNAILTSLNDQTDCKISDKLFSFKVISKVRCI EDDASGGGKPTKEKPSSDNAPSENPPSETANEIETTEEFHNKLICYMGTHTTPVNHMHEG IRLSLIEKIQKQRSEDSKEDALFEKKSEMNSLPPYLIVHFLRFESKKISETNNAISVVTA KICRKVSFPETFDIYDFCSDELKTQLKVARNIVMKRKEADLNARGGAEAVGGSTAASAQK NEGVNDTSVNESTNESSNDNTNGVTSDEATAVEGTAAEATAAEATATEEAHGEGSSPTED LTEIPMGEYELISIITHKGRNEESGHYIAWKKMRSSIGADSNTYKEQLASKKKKGNDSMW YKMDDDKVSTHKFSSLDLCGGCSDFNIAILLLYKRKTLLCTQEELDSHGK

No Results

title: Active Site
coordinates: N114,C119,H506,D545

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	PVX_079880	T	465	0.593	0.038	PVX_079880	T	467	0.577	0.195	PVX_079880	T	460	0.543	0.050	PVX_079880	T	251	0.519	0.062	PVX_079880	S	262	0.515	0.649	PVX_079880	T	455	0.509	0.068	PVX_079880	S	257	0.507	0.080	PVX_079880	S	256	0.506	0.109

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	PVX_079880	T	465	0.593	0.038	PVX_079880	T	467	0.577	0.195	PVX_079880	T	460	0.543	0.050	PVX_079880	T	251	0.519	0.062	PVX_079880	S	262	0.515	0.649	PVX_079880	T	455	0.509	0.068	PVX_079880	S	257	0.507	0.080	PVX_079880	S	256	0.506	0.109

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	PVX_079880	317 S	RSEDSKEDA	0.997	unsp	PVX_079880	317 S	RSEDSKEDA	0.997	unsp	PVX_079880	317 S	RSEDSKEDA	0.997	unsp	PVX_079880	367 S	CRKVSFPET	0.995	unsp	PVX_079880	432 S	SVNESTNES	0.994	unsp	PVX_079880	446 S	NGVTSDEAT	0.996	unsp	PVX_079880	92 S	VEDLSKEDK	0.998	unsp	PVX_079880	256 S	KEKPSSDNA	0.992	unsp

PVX_079880

PVX_079880 | ubiquitin carboxyl-terminal hydrolase, putative

ID's

UniProt_ID: A5K985

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0004197 GO:0004221 GO:0005515 GO:0036459

Computed_GO_Functions: cysteine-type endopeptidase activity obsolete ubiquitin thiolesterase activity protein binding thiol-dependent ubiquitinyl hydrolase activity

Computed_GO_Process_IDs: GO:0016579 GO:0006511

Computed_GO_Processes: protein deubiquitination ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India