PVX_080490 | rhomboid protease ROM9, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PVX_080490OTHER0.8815890.0003620.118048
No Results

  • Fasta :-

    >PVX_080490 MNQAERRLSRWPHRARGFSRYSEKQPLRERKRSQPILGAMRGIPLRDVLSKWNCLTVEHA RKGEKQMKKVIKKTYAELHVKYEEVRAKYKDTFPTWRDKRMKVLKRVGPFFQKGVFIRSI PIDGGQMKTILQKTFSLGGRVFFKKLKLLYRDANVPYYKNLFYHHFGRAPVTYTLMSLHI LVFLLWVKAKPGDTYSYIGMPPRGYYYPHSNAYTPLGGRNASSNYSSPFRLLNFLTMEFM YTHFCCGVQQLRERRLYTLVTNLISHNTGQSLLLNTISLFYIGRSFEMAINSRNFFLTYF LSGIISSYVQICYHKGGRFFLSPTSSSPYGNVCVLGASGSISSILATYTLMFPRSSIYLY GVLALPLALFTSLYGANEVYCVLTDKKDNTGHVAHLTGMFLGILYYYAYVKGRVPL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_080490.fa Sequence name : PVX_080490 Sequence length : 416 VALUES OF COMPUTED PARAMETERS Coef20 : 4.659 CoefTot : 0.129 ChDiff : 39 ZoneTo : 22 KR : 6 DE : 1 CleavSite : 26 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.953 1.953 0.373 0.731 MesoH : 0.886 0.844 0.058 0.408 MuHd_075 : 44.768 18.974 9.389 9.250 MuHd_095 : 35.925 19.605 8.868 8.041 MuHd_100 : 44.982 24.820 10.249 10.472 MuHd_105 : 53.045 27.485 12.184 12.755 Hmax_075 : 7.817 4.667 -0.969 3.640 Hmax_095 : -1.200 2.300 -2.782 1.410 Hmax_100 : 12.000 9.600 0.139 4.290 Hmax_105 : 3.967 6.767 -1.978 4.212 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0832 0.9168 DFMC : 0.1340 0.8660 This protein is probably imported in mitochondria. f(Ser) = 0.1364 f(Arg) = 0.2727 CMi = 0.30181 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 416 PVX_080490 MNQAERRLSRWPHRARGFSRYSEKQPLRERKRSQPILGAMRGIPLRDVLSKWNCLTVEHARKGEKQMKKVIKKTYAELHV 80 KYEEVRAKYKDTFPTWRDKRMKVLKRVGPFFQKGVFIRSIPIDGGQMKTILQKTFSLGGRVFFKKLKLLYRDANVPYYKN 160 LFYHHFGRAPVTYTLMSLHILVFLLWVKAKPGDTYSYIGMPPRGYYYPHSNAYTPLGGRNASSNYSSPFRLLNFLTMEFM 240 YTHFCCGVQQLRERRLYTLVTNLISHNTGQSLLLNTISLFYIGRSFEMAINSRNFFLTYFLSGIISSYVQICYHKGGRFF 320 LSPTSSSPYGNVCVLGASGSISSILATYTLMFPRSSIYLYGVLALPLALFTSLYGANEVYCVLTDKKDNTGHVAHLTGMF 400 LGILYYYAYVKGRVPL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_080490 6 -MNQAER|RL 0.092 . PVX_080490 7 MNQAERR|LS 0.123 . PVX_080490 10 AERRLSR|WP 0.273 . PVX_080490 14 LSRWPHR|AR 0.126 . PVX_080490 16 RWPHRAR|GF 0.103 . PVX_080490 20 RARGFSR|YS 0.169 . PVX_080490 24 FSRYSEK|QP 0.066 . PVX_080490 28 SEKQPLR|ER 0.088 . PVX_080490 30 KQPLRER|KR 0.073 . PVX_080490 31 QPLRERK|RS 0.279 . PVX_080490 32 PLRERKR|SQ 0.251 . PVX_080490 41 PILGAMR|GI 0.068 . PVX_080490 46 MRGIPLR|DV 0.170 . PVX_080490 51 LRDVLSK|WN 0.070 . PVX_080490 61 LTVEHAR|KG 0.104 . PVX_080490 62 TVEHARK|GE 0.084 . PVX_080490 65 HARKGEK|QM 0.065 . PVX_080490 68 KGEKQMK|KV 0.093 . PVX_080490 69 GEKQMKK|VI 0.105 . PVX_080490 72 QMKKVIK|KT 0.092 . PVX_080490 73 MKKVIKK|TY 0.092 . PVX_080490 81 YAELHVK|YE 0.062 . PVX_080490 86 VKYEEVR|AK 0.082 . PVX_080490 88 YEEVRAK|YK 0.081 . PVX_080490 90 EVRAKYK|DT 0.085 . PVX_080490 97 DTFPTWR|DK 0.090 . PVX_080490 99 FPTWRDK|RM 0.056 . PVX_080490 100 PTWRDKR|MK 0.425 . PVX_080490 102 WRDKRMK|VL 0.081 . PVX_080490 105 KRMKVLK|RV 0.114 . PVX_080490 106 RMKVLKR|VG 0.130 . PVX_080490 113 VGPFFQK|GV 0.067 . PVX_080490 118 QKGVFIR|SI 0.202 . PVX_080490 128 IDGGQMK|TI 0.077 . PVX_080490 133 MKTILQK|TF 0.074 . PVX_080490 140 TFSLGGR|VF 0.108 . PVX_080490 144 GGRVFFK|KL 0.065 . PVX_080490 145 GRVFFKK|LK 0.097 . PVX_080490 147 VFFKKLK|LL 0.059 . PVX_080490 151 KLKLLYR|DA 0.095 . PVX_080490 159 ANVPYYK|NL 0.063 . PVX_080490 168 FYHHFGR|AP 0.099 . PVX_080490 188 VFLLWVK|AK 0.052 . PVX_080490 190 LLWVKAK|PG 0.074 . PVX_080490 203 YIGMPPR|GY 0.088 . PVX_080490 219 YTPLGGR|NA 0.076 . PVX_080490 230 NYSSPFR|LL 0.089 . PVX_080490 252 CGVQQLR|ER 0.063 . PVX_080490 254 VQQLRER|RL 0.082 . PVX_080490 255 QQLRERR|LY 0.259 . PVX_080490 284 SLFYIGR|SF 0.152 . PVX_080490 293 EMAINSR|NF 0.071 . PVX_080490 315 VQICYHK|GG 0.058 . PVX_080490 318 CYHKGGR|FF 0.076 . PVX_080490 354 YTLMFPR|SS 0.111 . PVX_080490 386 YCVLTDK|KD 0.061 . PVX_080490 387 CVLTDKK|DN 0.099 . PVX_080490 411 YYYAYVK|GR 0.056 . PVX_080490 413 YAYVKGR|VP 0.082 . ____________________________^_________________

  • Fasta :-

    >PVX_080490 ATGAACCAAGCGGAGAGGCGCCTGTCCCGGTGGCCGCACCGGGCCCGGGGCTTCTCCCGG TACTCGGAGAAGCAACCCCTCAGGGAGAGGAAGAGGAGTCAGCCCATTTTAGGAGCCATG CGAGGCATCCCCCTGCGGGATGTTCTTTCCAAATGGAACTGCTTAACAGTGGAGCATGCT CGTAAAGGAGAGAAGCAGATGAAGAAGGTTATAAAAAAGACATATGCAGAATTGCATGTT AAATATGAAGAGGTGAGGGCGAAGTATAAGGACACCTTCCCCACGTGGAGAGACAAAAGA ATGAAAGTTCTAAAGCGAGTGGGTCCATTCTTCCAAAAGGGGGTATTCATAAGAAGCATA CCAATTGATGGGGGGCAAATGAAGACCATCCTACAGAAAACTTTTTCACTTGGAGGGAGA GTCTTCTTTAAAAAATTGAAGCTCCTCTATCGGGATGCAAACGTGCCCTACTATAAAAAT TTATTTTATCATCACTTTGGGAGAGCACCTGTAACGTATACGTTGATGTCTTTGCACATT TTGGTTTTCCTCCTATGGGTGAAGGCCAAGCCTGGGGATACATACAGCTACATTGGGATG CCTCCAAGGGGTTATTACTACCCCCATTCGAATGCATATACCCCCCTGGGGGGTAGGAAT GCCTCGTCTAATTACTCCTCCCCCTTTAGGCTTTTAAACTTCCTTACGATGGAATTTATG TACACCCACTTTTGCTGTGGAGTGCAACAGCTGAGGGAGAGGAGACTCTACACACTCGTG ACGAACCTCATCAGCCACAACACTGGGCAGTCCCTCCTGCTGAACACCATTTCGCTGTTC TACATCGGCAGGTCCTTCGAGATGGCTATCAACTCGAGGAATTTTTTTTTAACTTATTTT CTTAGTGGGATCATATCGTCCTATGTGCAGATTTGTTACCACAAGGGTGGGCGGTTCTTC TTATCTCCCACCTCCTCCTCTCCCTACGGCAACGTCTGCGTCTTGGGGGCCAGCGGCAGC ATCAGCTCCATCCTCGCCACCTACACGCTCATGTTCCCTCGCAGCAGCATTTATCTCTAC GGGGTCCTGGCGCTTCCCCTGGCCCTGTTCACCTCCCTCTACGGCGCCAACGAGGTCTAC TGCGTGCTGACGGACAAGAAGGACAACACAGGCCACGTGGCACACCTCACTGGGATGTTC CTGGGAATCCTCTACTACTACGCCTACGTCAAGGGGAGGGTGCCCCTGTAG
  • Download Fasta

  • Fasta :-

    MNQAERRLSRWPHRARGFSRYSEKQPLRERKRSQPILGAMRGIPLRDVLSKWNCLTVEHA RKGEKQMKKVIKKTYAELHVKYEEVRAKYKDTFPTWRDKRMKVLKRVGPFFQKGVFIRSI PIDGGQMKTILQKTFSLGGRVFFKKLKLLYRDANVPYYKNLFYHHFGRAPVTYTLMSLHI LVFLLWVKAKPGDTYSYIGMPPRGYYYPHSNAYTPLGGRNASSNYSSPFRLLNFLTMEFM YTHFCCGVQQLRERRLYTLVTNLISHNTGQSLLLNTISLFYIGRSFEMAINSRNFFLTYF LSGIISSYVQICYHKGGRFFLSPTSSSPYGNVCVLGASGSISSILATYTLMFPRSSIYLY GVLALPLALFTSLYGANEVYCVLTDKKDNTGHVAHLTGMFLGILYYYAYVKGRVPL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_08049022 SFSRYSEKQP0.995unspPVX_08049022 SFSRYSEKQP0.995unspPVX_08049022 SFSRYSEKQP0.995unspPVX_0804909 SERRLSRWPH0.996unspPVX_08049019 SARGFSRYSE0.994unsp
PVX_080490      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India