PVX_083160 | rhomboid protease ROM6, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PVX_083160OTHER0.8959050.0000260.104069
No Results

  • Fasta :-

    >PVX_083160 MFNAGRYFRASYYKKKNIFCVKGSRQFHGFVKSRRVQTNAVKRKDRIRRGRFLQLKEKLQ LVIFSSVYFFACDYVYHVYVLRDNGGRTAKRASNHSGESAGNDPKCKDERTNGEGGIGTT LMEYIKWMNIFSSAQGKDDQQLKQQDGECRGKNDGHRLEAQKGSHKKDHPSSNRGDVKIC SVCEEDPYEIKINRVKRSSGKEESSQTGKPGQSSYASNRREQLPSRDPPQRNSIGGGEKN MKDLLVSNFYRNDLFNGCNLFLFANGVVFLCWRLSEIAGNKKFFRFMCRNFICSYENVRR KYYHTIFTATISHITLPHFLFNMWAFHTISNTLLSPEIKENKTNYYFFFNYKSSVLEKKM TDRDIIKVCVLSSIISTVPYILLHKGNQLLGASGAVMGLVYLLSTVKPNEVFVSLFPLPY LKMTSLQLCHLSILTNFLFLFCRRNHFNVAWLAHLFGLMGGALYNFYQRRKNGNMNYYPF IELSLKNGPIDYLNSYLDFVDFAKCLQLQIRIFFSLDPRAMQSMNRKISSIKYMQSQRRM KFNMLKVKNLEAMSRLK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_083160.fa Sequence name : PVX_083160 Sequence length : 557 VALUES OF COMPUTED PARAMETERS Coef20 : 4.131 CoefTot : -1.394 ChDiff : 44 ZoneTo : 44 KR : 13 DE : 0 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.794 1.853 0.311 0.675 MesoH : 0.711 1.062 -0.047 0.438 MuHd_075 : 31.814 27.522 9.235 8.559 MuHd_095 : 27.919 14.327 7.456 6.029 MuHd_100 : 30.389 14.782 8.388 6.485 MuHd_105 : 41.331 21.057 11.519 8.414 Hmax_075 : 5.017 15.517 0.126 4.223 Hmax_095 : 1.300 10.800 -3.060 3.970 Hmax_100 : 1.300 5.300 -2.172 3.000 Hmax_105 : 6.300 7.000 1.829 2.765 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0065 0.9935 DFMC : 0.0130 0.9870 This protein is probably imported in mitochondria. f(Ser) = 0.0682 f(Arg) = 0.1364 CMi = 0.26132 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 557 PVX_083160 MFNAGRYFRASYYKKKNIFCVKGSRQFHGFVKSRRVQTNAVKRKDRIRRGRFLQLKEKLQLVIFSSVYFFACDYVYHVYV 80 LRDNGGRTAKRASNHSGESAGNDPKCKDERTNGEGGIGTTLMEYIKWMNIFSSAQGKDDQQLKQQDGECRGKNDGHRLEA 160 QKGSHKKDHPSSNRGDVKICSVCEEDPYEIKINRVKRSSGKEESSQTGKPGQSSYASNRREQLPSRDPPQRNSIGGGEKN 240 MKDLLVSNFYRNDLFNGCNLFLFANGVVFLCWRLSEIAGNKKFFRFMCRNFICSYENVRRKYYHTIFTATISHITLPHFL 320 FNMWAFHTISNTLLSPEIKENKTNYYFFFNYKSSVLEKKMTDRDIIKVCVLSSIISTVPYILLHKGNQLLGASGAVMGLV 400 YLLSTVKPNEVFVSLFPLPYLKMTSLQLCHLSILTNFLFLFCRRNHFNVAWLAHLFGLMGGALYNFYQRRKNGNMNYYPF 480 IELSLKNGPIDYLNSYLDFVDFAKCLQLQIRIFFSLDPRAMQSMNRKISSIKYMQSQRRMKFNMLKVKNLEAMSRLK 560 ................................................................................ 80 ................................................................................ 160 ....................................P........................................... 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................................................................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PVX_083160 6 -MFNAGR|YF 0.087 . PVX_083160 9 NAGRYFR|AS 0.265 . PVX_083160 14 FRASYYK|KK 0.061 . PVX_083160 15 RASYYKK|KN 0.115 . PVX_083160 16 ASYYKKK|NI 0.140 . PVX_083160 22 KNIFCVK|GS 0.068 . PVX_083160 25 FCVKGSR|QF 0.079 . PVX_083160 32 QFHGFVK|SR 0.087 . PVX_083160 34 HGFVKSR|RV 0.112 . PVX_083160 35 GFVKSRR|VQ 0.123 . PVX_083160 42 VQTNAVK|RK 0.060 . PVX_083160 43 QTNAVKR|KD 0.163 . PVX_083160 44 TNAVKRK|DR 0.136 . PVX_083160 46 AVKRKDR|IR 0.229 . PVX_083160 48 KRKDRIR|RG 0.081 . PVX_083160 49 RKDRIRR|GR 0.468 . PVX_083160 51 DRIRRGR|FL 0.392 . PVX_083160 56 GRFLQLK|EK 0.060 . PVX_083160 58 FLQLKEK|LQ 0.060 . PVX_083160 82 YHVYVLR|DN 0.099 . PVX_083160 87 LRDNGGR|TA 0.093 . PVX_083160 90 NGGRTAK|RA 0.155 . PVX_083160 91 GGRTAKR|AS 0.241 . PVX_083160 105 SAGNDPK|CK 0.066 . PVX_083160 107 GNDPKCK|DE 0.083 . PVX_083160 110 PKCKDER|TN 0.124 . PVX_083160 126 TLMEYIK|WM 0.059 . PVX_083160 137 FSSAQGK|DD 0.089 . PVX_083160 143 KDDQQLK|QQ 0.066 . PVX_083160 150 QQDGECR|GK 0.103 . PVX_083160 152 DGECRGK|ND 0.068 . PVX_083160 157 GKNDGHR|LE 0.099 . PVX_083160 162 HRLEAQK|GS 0.073 . PVX_083160 166 AQKGSHK|KD 0.063 . PVX_083160 167 QKGSHKK|DH 0.129 . PVX_083160 174 DHPSSNR|GD 0.078 . PVX_083160 178 SNRGDVK|IC 0.083 . PVX_083160 191 EDPYEIK|IN 0.060 . PVX_083160 194 YEIKINR|VK 0.080 . PVX_083160 196 IKINRVK|RS 0.076 . PVX_083160 197 KINRVKR|SS 0.897 *ProP* PVX_083160 201 VKRSSGK|EE 0.070 . PVX_083160 209 ESSQTGK|PG 0.067 . PVX_083160 219 SSYASNR|RE 0.070 . PVX_083160 220 SYASNRR|EQ 0.121 . PVX_083160 226 REQLPSR|DP 0.086 . PVX_083160 231 SRDPPQR|NS 0.115 . PVX_083160 239 SIGGGEK|NM 0.060 . PVX_083160 242 GGEKNMK|DL 0.069 . PVX_083160 251 LVSNFYR|ND 0.089 . PVX_083160 273 VVFLCWR|LS 0.080 . PVX_083160 281 SEIAGNK|KF 0.057 . PVX_083160 282 EIAGNKK|FF 0.092 . PVX_083160 285 GNKKFFR|FM 0.139 . PVX_083160 289 FFRFMCR|NF 0.084 . PVX_083160 299 CSYENVR|RK 0.067 . PVX_083160 300 SYENVRR|KY 0.136 . PVX_083160 301 YENVRRK|YY 0.145 . PVX_083160 339 LLSPEIK|EN 0.068 . PVX_083160 342 PEIKENK|TN 0.059 . PVX_083160 352 YFFFNYK|SS 0.067 . PVX_083160 358 KSSVLEK|KM 0.068 . PVX_083160 359 SSVLEKK|MT 0.118 . PVX_083160 363 EKKMTDR|DI 0.139 . PVX_083160 367 TDRDIIK|VC 0.055 . PVX_083160 385 PYILLHK|GN 0.057 . PVX_083160 407 YLLSTVK|PN 0.058 . PVX_083160 422 FPLPYLK|MT 0.067 . PVX_083160 443 FLFLFCR|RN 0.077 . PVX_083160 444 LFLFCRR|NH 0.095 . PVX_083160 469 LYNFYQR|RK 0.078 . PVX_083160 470 YNFYQRR|KN 0.155 . PVX_083160 471 NFYQRRK|NG 0.065 . PVX_083160 486 FIELSLK|NG 0.053 . PVX_083160 504 DFVDFAK|CL 0.067 . PVX_083160 511 CLQLQIR|IF 0.088 . PVX_083160 519 FFSLDPR|AM 0.079 . PVX_083160 526 AMQSMNR|KI 0.103 . PVX_083160 527 MQSMNRK|IS 0.134 . PVX_083160 532 RKISSIK|YM 0.077 . PVX_083160 538 KYMQSQR|RM 0.068 . PVX_083160 539 YMQSQRR|MK 0.161 . PVX_083160 541 QSQRRMK|FN 0.170 . PVX_083160 546 MKFNMLK|VK 0.059 . PVX_083160 548 FNMLKVK|NL 0.070 . PVX_083160 555 NLEAMSR|LK 0.081 . PVX_083160 557 EAMSRLK|-- 0.062 . ____________________________^_________________

  • Fasta :-

    >PVX_083160 ATGTTCAATGCTGGGAGATACTTCAGAGCGAGTTACTACAAGAAGAAGAACATTTTCTGT GTAAAGGGGAGCAGACAGTTTCATGGATTCGTCAAAAGTAGAAGAGTACAGACAAATGCC GTCAAGAGAAAAGATAGAATAAGAAGGGGGAGGTTTTTACAACTGAAGGAAAAGCTGCAA CTCGTCATTTTCAGCTCCGTGTACTTTTTTGCGTGCGACTATGTTTACCACGTGTATGTG CTGAGAGACAACGGGGGTAGAACTGCCAAGCGCGCCTCCAACCACAGCGGCGAAAGCGCG GGGAATGACCCAAAATGTAAAGACGAGCGCACTAATGGCGAGGGGGGGATCGGCACAACC CTGATGGAGTATATCAAATGGATGAACATATTTTCCAGTGCGCAGGGGAAGGATGACCAA CAGTTAAAACAGCAGGACGGTGAATGTAGGGGAAAAAATGACGGCCATAGATTAGAGGCT CAAAAAGGTTCCCATAAAAAGGATCACCCCTCGAGCAACAGAGGTGACGTAAAAATTTGC AGCGTATGCGAGGAAGACCCCTACGAAATAAAGATAAATCGCGTTAAGCGGAGCAGCGGG AAGGAGGAAAGCAGTCAAACGGGGAAGCCTGGCCAATCTTCCTATGCCTCGAATCGGAGA GAACAACTGCCTAGCCGCGACCCCCCCCAGCGAAACAGCATCGGAGGGGGGGAAAAAAAC ATGAAAGATCTACTCGTGAGTAACTTTTACAGAAATGATCTTTTCAACGGGTGCAACTTA TTTCTGTTCGCCAACGGGGTTGTGTTCCTATGTTGGCGTCTAAGCGAAATCGCAGGAAAT AAAAAATTCTTCCGCTTCATGTGCAGGAACTTTATCTGCTCATATGAAAATGTCAGAAGA AAATATTACCACACGATTTTTACAGCCACCATTAGCCACATCACTCTTCCCCATTTTTTA TTTAACATGTGGGCCTTTCATACCATAAGTAATACCCTCTTGAGTCCAGAAATTAAAGAG AACAAAACAAATTATTATTTTTTTTTTAATTATAAATCAAGCGTTTTAGAGAAAAAAATG ACAGACAGGGATATCATAAAAGTGTGTGTCTTATCTTCCATCATTTCGACTGTCCCGTAT ATTCTTTTACACAAAGGCAATCAACTGCTAGGAGCATCAGGAGCTGTTATGGGTCTTGTA TACTTGTTATCTACAGTTAAACCAAATGAGGTCTTCGTCTCTCTGTTTCCTCTCCCATAT TTAAAGATGACTTCCCTACAGCTTTGTCATCTCTCCATTCTAACCAACTTTTTATTTCTC TTTTGTAGAAGAAATCATTTCAACGTTGCTTGGTTGGCTCATTTATTTGGTTTAATGGGA GGGGCATTGTATAATTTTTACCAGAGGAGAAAAAACGGGAATATGAATTACTACCCCTTT ATTGAATTGTCCCTAAAAAATGGACCCATTGATTACCTCAATTCTTACCTTGACTTTGTA GATTTTGCCAAGTGTCTGCAGCTGCAAATTAGGATCTTCTTTTCCCTCGACCCACGCGCT ATGCAAAGCATGAACAGGAAAATCAGCTCCATTAAATATATGCAGTCGCAGAGGCGCATG AAATTTAACATGTTGAAGGTTAAAAATTTGGAGGCCATGTCCCGGTTGAAATAG
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  • Fasta :-

    MFNAGRYFRASYYKKKNIFCVKGSRQFHGFVKSRRVQTNAVKRKDRIRRGRFLQLKEKLQ LVIFSSVYFFACDYVYHVYVLRDNGGRTAKRASNHSGESAGNDPKCKDERTNGEGGIGTT LMEYIKWMNIFSSAQGKDDQQLKQQDGECRGKNDGHRLEAQKGSHKKDHPSSNRGDVKIC SVCEEDPYEIKINRVKRSSGKEESSQTGKPGQSSYASNRREQLPSRDPPQRNSIGGGEKN MKDLLVSNFYRNDLFNGCNLFLFANGVVFLCWRLSEIAGNKKFFRFMCRNFICSYENVRR KYYHTIFTATISHITLPHFLFNMWAFHTISNTLLSPEIKENKTNYYFFFNYKSSVLEKKM TDRDIIKVCVLSSIISTVPYILLHKGNQLLGASGAVMGLVYLLSTVKPNEVFVSLFPLPY LKMTSLQLCHLSILTNFLFLFCRRNHFNVAWLAHLFGLMGGALYNFYQRRKNGNMNYYPF IELSLKNGPIDYLNSYLDFVDFAKCLQLQIRIFFSLDPRAMQSMNRKISSIKYMQSQRRM KFNMLKVKNLEAMSRLK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_08316096 SASNHSGESA0.995unspPVX_08316096 SASNHSGESA0.995unspPVX_08316096 SASNHSGESA0.995unspPVX_083160199 SVKRSSGKEE0.998unspPVX_08316011 SYFRASYYKK0.994unspPVX_08316093 SAKRASNHSG0.996unsp
PVX_083160      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India